Bio.config.DBRegistry.BioCorbaDB

Class BioCorbaDB

Represent a BioCorba BioSequenceCollection for SeqRecord objects.

Returns SeqRecord-like objects.

Instance Methods

__init__(self, name, ior_ref, server_type=None, doc='')
Intialize with IOR reference for a BioCorba Collection. source code

_get_retriever(self, server_type)
Return a BioCorba retriever object based on the specified server.

source code

_get_corba_client(self, ior_ref, retriever)
Get a connection to the CORBA server based on the ior_ref

source code

data

_get(self, key)

source code

another data type

_convert_to(self, data, to_io)

source code

Inherited from DBObject: __getitem__, get, get_as, set

Inherited from DBObject (private): _make_pickleable, _set, _unmake_pickleable

init(self, name, ior_ref, server_type=None, doc=`''`)
(Constructor)

source code

Intialize with IOR reference for a BioCorba Collection.

ior_ref is a URL or file reference to an IOR string. The IOR should reference a BioSequenceCollection. This is the top level BioCorba object we should use for making objects available.

server_type is a hack parameter which might be necessary if there are server/client issues (ie. as with Perl ORBit) that we need to muck around with. If not set, we just use a standard retriever.

Overrides: Registry.RegisterableObject.__init__

_get_retriever(self, server_type)

source code

Return a BioCorba retriever object based on the specified server.

This returns a ready-to-go client retriever which can be used to connect to a BioCorba server.

_get(self, key)

source code

Returns: data
Overrides: DBObject._get: (inherited documentation)

_convert_to(self, data, to_io)

source code

Returns: another data type
Overrides: DBObject._convert_to: (inherited documentation)

Class BioCorbaDB

__init__(self, name, ior_ref, server_type=None, doc='') (Constructor)

_get_retriever(self, server_type)

_get(self, key)

_convert_to(self, data, to_io)

init(self, name, ior_ref, server_type=None, doc=`''`)
(Constructor)