Package Bio :: Module Std

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Module Std

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Classes

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StdTerm

Functions

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_set_if_given(attrs, field, d, valid=None, convert=None)

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_complain_if_given(attrs, name)

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_must_have(expr, f)

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_must_have_set(expr, sets)

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_must_not_have(expr, f)

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_check_name(f, text)

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_check_attrs(attrs, names)

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_settag(f, tag)

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record(expr, attrs={}) source code

dbid(expr, attrs={}) source code

description_block(expr, attrs={}) source code

description(expr, attrs={}) source code

description_line(expr, attrs={}) source code

fast_dbxref(expr, attrs={}) source code

dbxref(expr, attrs={}) source code

dbxref_dbname(expr, attrs={}) source code

dbxref_dbid(expr, attrs={}) source code

dbxref_negate(expr, attrs={}) source code

_check_gapchar(s)

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sequence_block(expr, attrs={}) source code

sequence(expr, attrs={}) source code

alphabet(expr, attrs={}) source code

feature_block(expr, attrs={}) source code

feature(expr, attrs={}) source code

feature_name(expr, attrs={}) source code

feature_location(expr, attrs={}) source code

feature_location_start(expr, attrs={}) source code

feature_location_end(expr, attrs={}) source code

feature_description(expr, attrs={}) source code

feature_qualifier(expr, attrs={}) source code

feature_qualifier_name(expr, attrs={}) source code

feature_qualifier_description(expr, attrs={}) source code

application_name(expr, attrs={}) source code

application_version(expr, attrs={}) source code

search_header(expr, attrs={}) source code

search_table(expr, attrs={}) source code

search_table_description(expr, attrs={}) source code

search_table_value(expr, attrs={}) source code

search_table_entry(expr, attrs={}) source code

query_description_block(expr, attrs={}) source code

query_description(expr, attrs={}) source code

query_size(expr, attrs={}) source code

database_name(expr, attrs={}) source code

database_num_sequences(expr, attrs={}) source code

database_num_letters(expr, attrs={}) source code

hit(expr, attrs={}) source code

hit_length(expr, attrs={}) source code

hit_description(expr, attrs={}) source code

hsp(expr, attrs={}) source code

hsp_value(expr, attrs={}) source code

hsp_frame(expr, attrs={}) source code

hsp_strand(expr, attrs={}) source code

hsp_seqalign_query_seq(expr, attrs={}) source code

hsp_seqalign_homology_seq(expr, attrs={}) source code

hsp_seqalign_subject_seq(expr, attrs={}) source code

hsp_seqalign_query_leader(expr, attrs={}) source code

hsp_seqalign_query_name(expr, attrs={}) source code

hsp_seqalign_subject_name(expr, attrs={}) source code

hsp_seqalign(expr, attrs={}) source code

hsp_seqalign_query_start(expr, attrs={}) source code

hsp_seqalign_query_end(expr, attrs={}) source code

hsp_seqalign_subject_start(expr, attrs={}) source code

hsp_seqalign_subject_end(expr, attrs={}) source code

search_parameter(expr, attrs={}) source code

search_statistic(expr, attrs={}) source code

Variables

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namespace = 'bioformat'

NS = 'bioformat:'

XMLNS = 'http://biopython.org/bioformat'

_use_hack = 0