Package Bio :: Package LocusLink

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Package LocusLink

Submodules

Bio.LocusLink.locus_format: Martel based parser to read LocusLink flat files.
Bio.LocusLink.web_parse

Classes

Record

Iterator
Iterator interface to move over a file of LocusLink entries one at a time.

_Scanner
Start up Martel to do the scanning of the file.

_RecordConsumer
Create a LocusLink Record object from scanner generated information.

RecordParser
Parse LocusLink files into Record objects

Variables

__warningregistry__ = {('Bio.LocusLink was deprecated, as NCBI...

Variables Details

warningregistry

Value:

{('Bio.LocusLink was deprecated, as NCBI\'s LocusLink was superceded b
y Entrez Gene. If you still need this module, please get in touch with
 the Biopython developers (biopython-dev@biopython.org) to avoid perma
nent removal of this module',
  <type 'exceptions.DeprecationWarning'>,
  15): 1}