Package Bio :: Package FSSP

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Package FSSP

Submodules

Bio.FSSP.FSSPTools
Bio.FSSP.fssp_rec

Classes

FSSPHeader

PosAlign

FSSPSumRec
Contains info from an FSSP summary record

FSSPAlignRec

FSSPAlignDict

FSSPSumDict

Functions

read_fssp(fssp_handle)

source code

Variables

header_records = {'author': re.compile(r'^AUTHOR'), 'compnd': ...

summary_title = re.compile(r'## +SUMMARY')

summary_rec = re.compile(r' *[0-9]+: +[1-9][0-9a-z]{3}')

alignments_title = re.compile(r'## +ALIGNMENTS')

alignments_rec = re.compile(r' *[0-9]+ +-?[0-9]+')

equiv_title = re.compile(r'## +EQUIVALENCES')

Variables Details

header_records

Value:

{'author': re.compile(r'^AUTHOR'),
 'compnd': re.compile(r'^COMPND'),
 'database': re.compile(r'^DATABASE'),
 'header': re.compile(r'^HEADER'),
 'nalign': re.compile(r'^NALIGN'),
 'pdbid': re.compile(r'^PDBID'),
 'seqlength': re.compile(r'^SEQLENGTH'),
 'source': re.compile(r'^SOURCE')}