Package ECell

source code

Submodules

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Bio.ECell.Record: Martel based parser to read ECell formatted files.
Bio.ECell.ecell_format: Martel based parser to read ECell formatted files.

Classes

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Error

ECellError
message - description of error

Iterator
Iterator interface to move over a file of ecell entries one at a time.

_Scanner
Start up Martel to do the scanning of the file.

_RecordConsumer
Create an ECell Record object from scanner generated information.

RecordParser
Parse ECell files into Record objects

Functions

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_clear_bad_block(block, items)

source code

_is_valid_substance(line_dict)

source code

is_only_digits(line)

source code

_set_reactor_defaults(line_dict)

source code

_set_defaults(line_dict)

source code

Variables

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__warningregistry__ = {('Bio.ECell was deprecated, as it does ...

Variables Details

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warningregistry

Value:

{('Bio.ECell was deprecated, as it does not seem to have any users. If
 you do use this module, please contact the Biopython developers at bi
opython-dev@biopython.org to avoid permanent removal of this module',
  <type 'exceptions.UserWarning'>,
  7): 1}