Class Immune

friendly should be an instance of Align. It should contain the set of protected sequences.

Instance Methods

__init__(self, friendly_seq, alphabet='acgt', tuner_dict=None, hot_mode=0) source code

set_defaults(self)

source code

tune(self)

source code

build_align(self, seq)

source code

select_at_random(self, items)

source code

guess_gaps(self, seq)
Fill gaps with random selction from alphabet

source code

scramble(self, seq)
Substitute residues in sequence at random.

source code

found_antigen(self, detector, mystery_sequence)

source code

lazy_auto_immune_check(self, seq)

source code

compute_accum_weight(self)

source code

search_accum_weight(self, t)

source code

pick_a_lymphocyte(self)
Random selection biased by weight

source code

random_test(self, mystery_sequence)
A single test probably won't catch a corrupted sequence.

source code

create_lymphocyte(self)

source code

lymphocyte_factory(self)

source code

Method Details

A single test probably won't catch a corrupted sequence. Lots of tests are required