
                                cutgextract 
                                      
   
   
Function

   Extract data from CUTG
   
Description

   **************** EDIT HERE ****************
   
Usage

   Here is a sample session with cutgextract:

% cutgextract

   **************** EDIT HERE ****************
   
Command line arguments

   Standard (Mandatory) qualifiers:
  [-directory]         dirlist    CUTG directory

   Additional (Optional) qualifiers: (none)
   Advanced (Unprompted) qualifiers:
   -wildspec           string     Type of codon file

   Associated qualifiers: (none)
   General qualifiers:
   -auto                boolean    Turn off prompts
   -stdout              boolean    Write standard output
   -filter              boolean    Read standard input, write standard output
   -options             boolean    Prompt for standard and additional values
   -debug               boolean    Write debug output to program.dbg
   -verbose             boolean    Report some/full command line options
   -help                boolean    Report command line options. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning             boolean    Report warnings
   -error               boolean    Report errors
   -fatal               boolean    Report fatal errors
   -die                 boolean    Report deaths
   

   Error: File
   /packages/emboss_dev/gwilliam/emboss/emboss/emboss/acd/cutgextract.acd
   line 11: (directory) Unknown attribute 'name'
   
Input file format

   **************** EDIT HERE ****************
   
Output file format

   **************** EDIT HERE ****************
   
Data files

   **************** EDIT HERE ****************
   
Notes

   None.
   
References

   None.
   
Warnings

   None.
   
Diagnostic Error Messages

   None.
   
Exit status

   It always exits with status 0.
   
Known bugs

   None.
   
See also

   Program name Description
   aaindexextract Extract data from AAINDEX
   printsextract Extract data from PRINTS
   prosextract Builds the PROSITE motif database for patmatmotifs to
   search
   rebaseextract Extract data from REBASE
   tfextract Extract data from TRANSFAC
   
Author(s)

   Alan Bleasby (ableasby  hgmp.mrc.ac.uk)
   HGMP-RC, Genome Campus, Hinxton, Cambridge CB10 1SB, UK
   
History

   Written (date) - author.
   
Target users

   This program is intended to be used by everyone and everything, from
   naive users to embedded scripts.
   
Comments
