2006-02-01 10:00  prudhomm

	* admin/ac_check_petsc.m4, life/lifealg/SolverPETSC.cpp:

	backport petsc 2.3 fixes

2006-02-01 09:51  prudhomm

	* life/lifealg/SolverPETSC.cpp:

	be backward compatible

2006-02-01 09:46  prudhomm

	* admin/ac_check_petsc.m4:

	fix petsc check

	CCMAIL: nicole.poussineau@ann.jussieu.fr CCMAIL:
	salsac@ladhyx.polytechnique.fr

2006-02-01 09:44  prudhomm

	* life/lifealg/SolverPETSC.cpp:

	fix compilation

2006-02-01 09:11  prudhomm

	* life/lifemesh/mesh_util_base.hpp:

	fix compilation

2006-01-28 11:35  fernandez

	* testsuite/test_ns_stab/main.cpp:

	getting medit from life/lifefilters/medit.hpp

2006-01-28 11:35  fernandez

	* testsuite/test_ns_stab/Makefile.am:

	removed old .hpp files

2006-01-28 11:32  fernandez

	* testsuite/test_ns_stab/: ipStabilization.hpp,
	meditPostProcess.hpp, sdStabilization.hpp:

	removed files, now they are in the library

2006-01-28 11:29  fernandez

	* testsuite/test_ns_stab/NavierStokesSolver.hpp:

	Stabilization from life/lifesolver

2006-01-28 11:24  fernandez

	* life/lifesolver/sdStabilization.hpp:

	Two bugs fixed: 1. added viscosisty in \Deta u terms 2. local
	matrices not transposed

2006-01-17 08:06  prudhomm

	* admin/lifev_check_compilers.m4:

	removed arch specific options that break the code on amd

2006-01-13 17:20  winkelma

	* life/lifesolver/: AFSolvers.hpp, HyperbolicSolverIP.hpp,
	LevelSetSolverUtils.hpp, NSSolver2FluidsMixed.hpp,
	dataNS2Fluids.hpp:

	fixed doxygen warnings

2005-12-21 14:38  winkelma

	* Mainpage.dox:

	update link in doxygen main page

2005-12-21 11:41  winkelma

	* life/lifesolver/NavierStokesAleSolverCT.hpp:

	correct class name for doxygen

2005-12-19 07:56  winkelma

	* NEWS:

	update news

2005-12-19 07:46  prudhomm

	* NEWS:

	update

2005-12-19 07:38  prudhomm

	* testsuite/: Makefile.am, test_fsi_si/Makefile.am,
	test_fsi_stab/Makefile.am, test_nsale/Makefile.am,
	test_nsaleCT/Makefile.am:

	disable tests, shall be moved soon to playground

2005-12-18 21:50  prudhomm

	* life/lifesolver/NavierStokesHandler.hpp:

	fixed crash in NavierStokesHandler after calling flux() and similar
	thanks to the 1 vs 0 indexing

2005-12-18 21:49  prudhomm

	* life/lifearray/SimpleVect.hpp:

	added destructor

2005-12-18 21:04  prudhomm

	* Makefile.am:

	added ac_check_pvm

2005-12-18 21:04  prudhomm

	* life/lifesolver/NSSolver2FluidsMixed.hpp:

	fixed compilation with gcc 4.x (this-> issue)

2005-12-18 21:03  prudhomm

	* admin/ac_check_lapack.m4:

	don't exit but warn about possible compilation failure later

2005-12-18 20:39  prudhomm

	* .cvsignore:

	ignore stuff

2005-12-18 20:38  prudhomm

	* Makefile.am:

	update acinclude.m4

2005-12-18 20:38  prudhomm

	* NEWS:

	update NEWS

2005-12-18 20:38  prudhomm

	* admin/lifev_check_compilers.m4:

	added simple gfortran support some more options

2005-12-18 20:38  prudhomm

	* admin/ac_check_boost.m4:

	hopefully better handling of boost version

2005-12-18 20:37  prudhomm

	* admin/cvs.sh:

	handle newer versions of libtool

2005-12-18 20:36  prudhomm

	* admin/: libtool.m4, ltdl.m4, ltoptions.m4, ltsugar.m4,
	ltversion.m4:

	added libtool detection scripts

2005-12-18 20:31  prudhomm

	* life/lifesolver/darcySolver.hpp:

	--warning fixed compilation with g++ 4.x (this-> issue)

2005-12-18 20:30  prudhomm

	* life/lifefem/: postProc.hpp, refFEDG.cpp:

	--warning

2005-12-18 20:24  prudhomm

	* life/lifefem/.cvsignore:

	ignore stuff

2005-12-18 20:24  prudhomm

	* life/lifearray/pattern.hpp:

	fixed compilation wrt gcc 4.x seems like this code was _never_ used

2005-12-18 20:23  prudhomm

	* life/lifearray/RNM.hpp:

	fixed compilation wrt gcc 4.x the this-> issue again

2005-12-18 09:41  lformaggia

	* testsuite/test_onedmodel/data:

	Reverted to previous situation

2005-12-18 09:38  lformaggia

	* life/lifefilters/mesh_util.hpp, life/lifefilters/readMesh3D.cpp,
	life/lifefilters/readMesh3D.hpp, life/lifemesh/regionMesh3D.hpp,
	testsuite/test_fhn/fhnHandler.cpp, testsuite/test_fsi/data,
	testsuite/test_mesh/data, testsuite/test_mesh/test_mesh.cpp:

	Reverted to previous situation

2005-12-16 10:15  prudhomm

	* admin/ac_check_lapack.m4:

	do not exit if g2c is not found

2005-12-14 17:19  lformaggia

	* life/lifefilters/mesh_util.hpp, life/lifefilters/readMesh3D.cpp,
	life/lifefilters/readMesh3D.hpp, life/lifemesh/regionMesh3D.hpp,
	testsuite/test_fhn/fhnHandler.cpp, testsuite/test_fsi/data,
	testsuite/test_mesh/data, testsuite/test_mesh/test_mesh.cpp:

	New versiono of readINRIAmesh that can treat the existance of a
	limited number of internal faces in the mesh

	Added RegionMesh3D<>:: method  to extract selected goemetrical
	entities

2005-12-14 17:15  lformaggia

	* testsuite/data/mesh/inria/: bif3d_stentlarge2d_tria.mesh,
	bif3d_tet_tiny.mesh:

	New INRIA test case. They need the versione or readINRIAmesh that
	can treat the existance of a limited number of internal faces in
	the mesh

2005-10-20 19:14  prudhomm

	* life/lifefem/: v2elemVec.hpp, values.hpp:

	DeICEd (tm) the code now it compiles fine and it is somewhat
	cleaner.

2005-10-20 19:06  prudhomm

	* admin/lifev_check_compilers.m4:

	default compiler to the default version (gcc, g++ and gfortran)

2005-10-20 18:12  winkelma

	* life/lifesolver/: convDiffReactHandler.hpp,
	convDiffReactSolverPC.hpp:

	make it compile with g++ >= 4

2005-10-20 16:59  winkelma

	* life/lifesolver/NSSolver2FluidsMixed.hpp:

	make it compile with g++ >= 4

2005-10-20 16:37  winkelma

	* life/lifesolver/nsip.hpp:

	make it compile with g++ >= 4

2005-10-20 16:23  prudhomm

	* life/lifesolver/NavierStokesHandler.hpp:

	make it compile with g++ >= 4(remove conflicting typedef
	statements)

2005-10-20 16:03  prudhomm

	* testsuite/test_coupling_3d0d/: .cvsignore, C3d0d.hpp:

	make it compile with g++ >= 4(remove conflicting typedef
	statements) ignore automagically generated files

2005-10-20 15:59  prudhomm

	* testsuite/test_levelset_ipstab/: .cvsignore, main.cpp:

	make it compile with g++ >= 4 ignore automagically generated files

2005-10-20 15:44  winkelma

	* life/lifemesh/regionMesh2D.hpp:

	removed nonsense assert (copy-paste error?)

2005-10-20 15:25  prudhomm

	* life/lifesolver/: HyperbolicSolverIP.hpp, LevelSetSolver.hpp,
	NSSolver2FluidsMixed.hpp:

	started porting to g++ >= 4

2005-10-20 15:22  prudhomm

	* life/lifesolver/AFSolvers.hpp:

	make it compile with  g++ >= 4

2005-10-20 15:17  prudhomm

	* life/lifefem/: v2elemVec.hpp, values.hpp:

	temporary fix for g++ >= 4 ICE

2005-10-20 15:16  prudhomm

	* life/lifearray/boostmatrix.hpp:

	fixes for BOOST 1.33 with backweard compatibility wrt ublas API
	which has changed

2005-10-20 15:06  prudhomm

	* testsuite/: .cvsignore, test_coupling_3d0d/.cvsignore,
	test_fhn/.cvsignore, test_fsi/.cvsignore,
	test_fsi_qnewton/.cvsignore:

	ignore

2005-10-20 14:58  prudhomm

	* testsuite/test_ns_stab/NavierStokesSolver.hpp:

	make it compile with g++ >= 4

2005-10-20 14:57  prudhomm

	* .cvsignore, doc/api/.cvsignore, tools/.cvsignore,
	testsuite/test_ns_bcvec/.cvsignore,
	testsuite/test_ns_cyl/.cvsignore,
	testsuite/test_ns_sstress/.cvsignore,
	testsuite/test_ns_stab/.cvsignore, tools/inspect/.cvsignore:

	ignore

2005-10-20 14:53  prudhomm

	* life/lifearray/pattern.hpp:

	remove ambiguity with other setpatt function by enforcing to
	provide the last two arguments. (no more default values)

2005-10-20 14:49  prudhomm

	* life/lifearray/boostmatrix.hpp:

	ported to boost 1.33 with backward compatibility

2005-10-20 13:57  prudhomm

	* testsuite/test_ns_cyl_flux/: .cvsignore, main_new.cpp:

	**sigh**

2005-10-20 13:51  prudhomm

	* testsuite/: .cvsignore, data/mesh/netgen/.cvsignore,
	lifealg/.cvsignore, lifearray/.cvsignore, lifecore/.cvsignore,
	lifefem/.cvsignore, lifefilters/.cvsignore, lifesolver/.cvsignore,
	test_coupling_3d0d/.cvsignore, test_darcy/.cvsignore,
	test_dg/.cvsignore, test_fhn/.cvsignore, test_fsi/.cvsignore,
	test_fsi_dd/.cvsignore, test_fsi_newton/.cvsignore,
	test_fsi_picard/.cvsignore, test_fsi_qnewton/.cvsignore,
	test_fsi_si/.cvsignore, test_fsi_stab/.cvsignore,
	test_laplacian/.cvsignore, test_levelset_ipstab/.cvsignore,
	test_mass_coupling/.cvsignore, test_ns_2fluids/.cvsignore,
	test_ns_bcvec/.cvsignore, test_ns_cyl_flux/.cvsignore,
	test_ns_cyl_ipstab/.cvsignore, test_ns_stab/.cvsignore,
	test_nsale/.cvsignore, test_nsaleCT/.cvsignore,
	test_onedmodel/.cvsignore, test_ns_bdf/.cvsignore:

	LifeV janitory work ignore

2005-10-20 13:50  prudhomm

	* testsuite/lifecore/test_mark_to_bc.cpp:

	--warnings with g++ >= 4.0

2005-10-20 13:45  prudhomm

	* life/lifefem/.cvsignore:

	ignore .lo files

2005-10-20 13:44  prudhomm

	* life/lifesolver/: .cvsignore, darcyHandler.hpp, darcySolver.hpp,
	timeSolver.hpp:

	make it compile for g++ >= 4.0 ignore .lo files

2005-10-20 13:44  prudhomm

	* life/: lifealg/.cvsignore, lifearray/.cvsignore,
	lifecore/.cvsignore, lifefilters/.cvsignore, lifemesh/.cvsignore:

	ignore

2005-10-19 09:00  fernandez

	* life/lifesolver/Makefile.am:

	NavierStokesAleCT.cp removed, avoiding compiling problems

2005-10-19 08:58  fernandez

	* life/lifesolver/NavierStokesAleSolverCT.cpp:

	Removed, CT source terms moved to elemOper

2005-10-19 08:57  fernandez

	* life/lifesolver/NavierStokesAleSolverCT.hpp:

	Chorin-Temam source terms from elemOper

2005-10-19 08:56  fernandez

	* life/lifefem/: elemOper.cpp, elemOper.hpp:

	Chorin-Teman source terms are now here

2005-10-18 16:52  fernandez

	* testsuite/test_fsi_si/data:

	Updated data

2005-10-18 16:24  fernandez

	* testsuite/test_fsi_si/: Makefile.am, data, main.cpp, operFS.hpp,
	ud_functions.hpp:

	This test couples the Navier-Stokes and (linear) Elastodynamic
	equations using the semi-implicit scheme introduced in	INRIA
	Research Report 5700, "A projection semi-implicit scheme for the
	coupling of an elastic structure with an incompressible fluid", by
	M.A. Fernndez, J.-F. Gebeau and C. Grandmont.	Tested with SD
	stabilization (advective-diffusive sub-step) P1/P1 and Q1/Q1.

2005-10-18 16:18  fernandez

	* life/lifesolver/Makefile.am:

	Added  NavierStokesAleSolverCT.cpp avoiding link errors

2005-10-18 16:07  fernandez

	* testsuite/test_fsi_stab/Makefile.am:

	Removed deprecated headers

2005-10-18 15:53  fernandez

	* testsuite/test_fsi_stab/operFS.hpp:

	Compilation error fixed with gcc-3.3

2005-10-14 14:51  fernandez

	* testsuite/test_fsi_stab/data:

	Setup default algorithm to 1

2005-10-14 14:37  fernandez

	* testsuite/test_nsaleCT/: Makefile.am, data, main.cpp,
	ud_functions.hpp:

	Fluid code to be coupled with an external solid solver using
	Jean-Fred pvm coupler (masterFSI), using the semi-implicit scheme
	introduced in the INRIA Research Report 5700, "A projection
	semi-implicit scheme for the coupling of an elastic structure with
	an incompressible fluid", by M.A. Fernndez, J.-F. Gebeau and C.
	Grandmont.  PVM required. Tested with SD (P1/P1 and Q1/Q1) or IP
	stabilization (P1/P1).

2005-10-14 14:27  fernandez

	* life/lifesolver/: NavierStokesAleSolverCT.cpp,
	NavierStokesAleSolverCT.hpp:

	ALE Chorin-Teman semi-implicit scheme with stabilized finite
	elements in space (SUPG), used to perform Semi-implcit FSI coupling
	Tested with P1/P1 and Q1/Q1

2005-10-14 14:16  fernandez

	* admin/: Makefile.am, ac_check_pvm.m4, lifev_default_paths.m4:

	modifed to check for pvm. CP, please, have a look at it!

2005-10-14 14:14  fernandez

	* configure.in.in:

	modified to check for pvm

2005-10-14 14:10  fernandez

	* testsuite/test_nsale/: Makefile.am, data, main.cpp,
	ud_functions.hpp:

	nsale test to be coupled with a external solid solver  using pvm
	and Jean-Fred's coupler (masterFSI).

2005-10-14 14:03  fernandez

	* life/lifesolver/fluidToMaster.hpp:

	This file contains an interface class between a LifeV fluid solver
	and the masterFSI coupler of Jean-Fred's, used to couple a fluid
	solver with an external (non-linear) solid solver

2005-10-14 13:32  fernandez

	* testsuite/test_fsi_stab/: Makefile.am, data, main.cpp,
	operFS.hpp, ud_functions.hpp:

	This test solves the standard fsi problem in a stright cylinder.
	1.- The fluid solver allows P1/P1 or Q1/Q1 (with sd) via
	stabilization techniques (SD or IP) 2.- The coupling can be solved
	by Newton's iterations: Exact Newton (FSIalgo=1), Quasi-Newton
	(FSIalgo=2 or 3)

2005-10-14 13:20  fernandez

	* life/lifesolver/ipStabilization.hpp:

	Well, this class have to be merged with nsipterms.hpp, Christoph W?

2005-10-14 13:13  fernandez

	* life/lifesolver/: NavierStokesAleSolver.hpp, sdStabilization.hpp:

	1. Navier-Stokes solver allowing moving domains (via an    ALE
	formulation). Time semi-implicit scheme with stabilized    finite
	elements in space (SDFEM and IP). Tested with P1/P1 (SDFEM and IP)
	and Q1/Q1 (only SDFEM) 2. c++ class implementing the sdfem
	stabilization (following the previous template of ip)

2005-10-14 08:05  fernandez

	* life/lifesolver/: ElasticStructureHandler.hpp,
	NavierStokesAleSolverPC.hpp:

	Code is now C++ 3.4 compatible

2005-10-14 07:46  fernandez

	* life/lifesolver/: NavierStokesHandler.hpp,
	NavierStokesAleHandler.hpp:

	Code is now c++ 3.4 compatible

2005-10-14 07:33  fernandez

	* life/lifefem/: elemOper.cpp, elemOper.hpp:

	FSI Newton: source_mass1 is now full consistent, and source_mass3
	computes the shape derivative of \int \div u^n u . v

2005-10-14 07:06  fernandez

	* life/lifefilters/: medit.hpp, meditPostProcess.hpp:

	meditPostProcess.hpp removed medit.hpp added following CP
	recomenadtion

2005-10-14 07:03  fernandez

	* testsuite/Makefile.am:

	test_nsale disabled until new version

2005-10-14 07:01  fernandez

	* testsuite/test_nsale/.cvsignore:

	Removed until new version

2005-10-13 19:38  fernandez

	* life/lifefilters/meditPostProcess.hpp:

	medit class, first attemp to externalize postprocessing

2005-10-13 14:40  fernandez

	* life/lifesolver/VenantKirchhofSolver.hpp:

	Code now is gcc 3.4 compatible

2005-10-13 09:20  fernandez

	* life/lifefem/bcManage.hpp:

	Bug fixed in natural bc's with dataVector types 1,2

2005-10-13 08:21  fernandez

	* testsuite/test_nsale/: Makefile.am, data, imp3dt2.mesh, main.cpp,
	pvm3.h, ud_functions.hpp:

	Remove old files

2005-10-12 16:51  gfourestey

	* life/lifefem/: dofInterface3Dto2D.cpp, dofInterface3Dto2D.hpp,
	dofInterfaceBase.cpp, dofInterfaceBase.hpp:

	removed working variables defined as members + added public getter
	and setter to _locDofMap + added a memeber to build the inverse of
	_locDofMap

2005-10-12 16:47  gfourestey

	* life/lifefem/bcManage.hpp:

	small fix to minimize memory access

2005-09-26 12:12  gfourestey

	* life/lifesolver/NavierStokesAleSolverPC.hpp:

	removing the BCs declaration from the library for FS interactions:
	external BC setter for the harmonic extension added

2005-09-26 10:18  gfourestey

	* life/lifesolver/NavierStokesAleHandler.hpp:

	Harmonic extension BC setter now implemented

2005-09-26 10:06  gfourestey

	* life/lifesolver/VenantKirchhofSolver.hpp:

	BC-less constructor now resizes M_ddisp correctly

2005-09-26 10:00  gfourestey

	* life/lifealg/algebraic_facto.hpp:

	bug fix

2005-09-01 21:40  lformaggia

	* admin/lifev_check_compilers.m4:

	Added switch for athlon CPU's

2005-08-05 10:59  vmartin

	* doc/manual/: BasElSha.eps, BasElSha.fig, BasElSha.pdf:

	fixed the bug in the manual: the numbering of the faces on the
	reference hexa was wrong.

2005-07-22 09:52  winkelma

	* testsuite/lifealg/test_petsc.cpp:

	test for different (desired) behaviour of LifeV PETSc classes

2005-07-22 09:44  winkelma

	* life/lifealg/SolverPETSC.cpp:

	initialize PETSc only if used

2005-07-21 12:44  prudhomm

	* admin/ac_check_mpi.m4:

	added MPILIBS to LIBS

2005-07-19 16:54  gfourestey

	* admin/ac_check_aztec.m4:

	added librairies for trilinos solvers

2005-07-19 09:19  gfourestey

	* admin/ac_check_aztec.m4:

	added proper library for trilinos

2005-07-13 09:04  prudhomm

	* Makefile.am, Makefile.headers, configure.in.in:

	forward port

2005-07-13 08:52  prudhomm

	* Makefile.am, Makefile.headers:

	no makefile.headers rule, use 'sh tools/update-headers directy

2005-07-13 08:52  prudhomm

	* configure.in.in:

	no bz2 anymore

2005-07-13 08:34  prudhomm

	* testsuite/test_onedmodel/testsuite.at:

	forward ported

2005-07-13 08:33  prudhomm

	* configure.in.in:

	forward ported configure.in.in

2005-07-13 08:32  prudhomm

	* README.g++:

	forward ported README.g++

2005-07-13 08:28  prudhomm

	* testsuite/test_onedmodel/testsuite.at:

	don't show graceplot

2005-07-13 08:24  prudhomm

	* README.g++, configure.in.in:

	added a README.g++ as I am tired of answering the same questions
	all the time

2005-07-08 17:05  gfourestey

	* admin/ac_check_aztec.m4:

	Epetra lib is now linked when Trilinos is found

2005-06-30 06:13  prudhomm

	* life/lifesolver/NavierStokesWithFlux.hpp,
	testsuite/test_ns_cyl_flux/main_new.cpp:

	CCMAIL: vergara@mate.polimi.it, passerini@mate.polimi.it

	renamed STRATEGY_FLUX_EXACT  and STRATEGY_FLUX_INEXACT to
	STRATEGY_FLUX_GMRES_EXACT and STRATEGY_FLUX_GMRES_INEXACT following
	Christian suggestions

2005-06-29 11:46  prudhomm

	* admin/Makefile.am, Makefile.am, tools/inspect/Makefile.am:

	fix makefile

2005-06-29 11:46  prudhomm

	* testsuite/: test_fsi/Makefile.am, test_ns_2fluids/Makefile.am:

	fix makefile added .hpp

2005-06-29 10:35  prudhomm

	* testsuite/: Makefile.am, testsuite.at, test_ns_stab/Makefile.am,
	test_ns_stab/testsuite.at:

	adding test_ns_stab :( :( :(

2005-06-29 10:03  prudhomm

	* configure.in.in:

	use AC_LANG_PROGRAM

2005-06-29 09:46  prudhomm

	* life/lifealg/SolverPETSC.cpp, life/lifealg/SolverPETSC.hpp,
	configure.in.in:

	now properly check sizeof(size_t) with sizeof(uint) and define
	LIFEV_SIZET_SAME_AS_UINT if they are the same

2005-06-29 09:11  prudhomm

	* testsuite/test_ns_cyl_ipstab/Makefile.am:

	one EXTRA_DIST too much

2005-06-29 09:09  prudhomm

	* NEWS:

	minor mods

2005-06-29 09:09  prudhomm

	* testsuite/lifealg/Makefile.am:

	minor fix

2005-06-29 09:08  prudhomm

	* configure.in.in:

	bump up the version

2005-06-29 09:07  prudhomm

	* life/lifesolver/NavierStokesWithFlux.hpp,
	testsuite/test_coupling_3d0d/main_NS0d.cpp,
	testsuite/test_ns_cyl_flux/main_new.cpp:

	patch from Tiziano

	I explicited the names of the strategies

2005-06-29 09:06  prudhomm

	* life/lifealg/: SolverPETSC.cpp, SolverPETSC.hpp:

	only use the size_t version of setMatrix() should work both for
	32bits and 64 bits

2005-06-29 07:36  prudhomm

	* testsuite/test_ns_cyl_ipstab/testsuite.at:

	add test_ns_cyl_ipstab into testsuite

2005-06-29 07:36  prudhomm

	* life/lifealg/: SolverPETSC.cpp, SolverPETSC.hpp:

	fix for 64 bits

2005-06-29 07:35  prudhomm

	* testsuite/: Makefile.am, testsuite.at:

	add test_ns_cyl_ipstab

2005-06-29 07:35  prudhomm

	* testsuite/lifealg/Makefile.am:

	Fixed compilation

2005-06-29 07:35  prudhomm

	* testsuite/test_ns_cyl_ipstab/main.cpp:

	Fixed compilation

	use calculateBoundaryForce() to compute boundary forces on the
	cylinder

	got rid of liftCoeff() is not part of the interface of
	NavierStokesSolverIP<>

2005-06-20 14:44  winkelma

	* life/lifesolver/NSSolver2FluidsMixed.hpp:

	* make sure code compiles even without PETSc or UMFPACK   ( issue a
	warning in this case ) * remove Vector _M_pressure_constant (not
	used!)

2005-06-20 14:44  winkelma

	* life/lifesolver/HyperbolicSolverIP.hpp:

	applying BCs for aztec version currently broken - disabled

2005-06-20 13:55  winkelma

	* life/lifesolver/HyperbolicSolverIP.hpp:

	don't rely on PETSc in cvs version

2005-06-20 10:35  gfourestey

	* life/lifesolver/NSSolver2FluidsMixed.hpp:

	fixed the bc getter

2005-06-20 08:04  prudhomm

	* testsuite/: test_ns_cyl_ipstab/.cvsignore,
	test_ns_stab/.cvsignore:

	CVS_SILENT ignore

2005-06-20 07:36  prudhomm

	* life/Makefile.am:

	install debug.areas in $(pkgdatadir)

2005-06-17 16:13  winkelma

	* life/lifesolver/nsip.hpp:

	* store M_reusePC instead of M_tThisSolve (more intuitive) * reuse
	symbolic factorization for UMFPACK

2005-06-17 15:28  prudhomm

	* admin/lifev_check_compilers.m4:

	no opteron arch

2005-06-17 14:25  gfourestey

	* life/lifesolver/FSIOperator.cpp:

	bug fix.

2005-06-17 14:13  gfourestey

	* life/lifesolver/: exactJacobianBase.cpp, reducedLinFluid.cpp,
	steklovPoincareBase.cpp, steklovPoincareBase.hpp:

	bd update bug fix + strong residual computation modification

2005-06-17 06:10  prudhomm

	* testsuite/Makefile.am:

	compile test_ns_2fluids

2005-06-17 06:07  prudhomm

	* life/lifecore/: about.cpp, about.hpp:

	add trivial destructor in case it might be needed in the future

2005-06-17 00:17  lformaggia

	* life/: lifefilters/readMesh3D.hpp, lifemesh/mesh_util_base.hpp:

	Solved some problems with inconsistent mesh files.

2005-06-16 19:24  fernandez

	* life/lifefem/meshMotion.hpp:

	A very embarrasing bug... M_BCh_harmonicExtension->bdUpdateDone()
	instead of ! M_BCh_harmonicExtension->bdUpdateDone() I've just
	spent a few hours in catching it.

2005-06-16 14:31  prudhomm

	* admin/lifev_check_compilers.m4:

	add profiling option

2005-06-16 08:24  winkelma

	* life/lifemesh/mesh_util_base.hpp:

	* fixed warnings * improved output

2005-06-16 08:11  winkelma

	* life/lifearray/boostmatrix.hpp:

	reverted changes for 64bit (caused me lots of warnings and
	segmentation faults)

2005-06-16 07:43  winkelma

	* life/lifecore/about.cpp:

	(bugfix) make sure d is properly initialized, may segfault
	otherwise...

2005-06-15 20:14  lformaggia

	* life/: lifefilters/mesh_util.hpp, lifemesh/mesh_util_base.hpp,
	lifemesh/regionMesh3D.hpp:

	corretted a few bugs

2005-06-15 15:18  winkelma

	* life/lifefilters/readMesh3D.hpp:

	typos...

2005-06-15 13:53  winkelma

	* life/lifefilters/readMesh3D.hpp:

	* added verbose flag to readGmshFile like in other readers * added
	verbose flag to readNetgenMesh like in other readers * removed
	innecessary forward declaration to readNetgenMesh

2005-06-15 10:57  winkelma

	* life/lifearray/boostmatrix.hpp:

	prepare for 64bit

2005-06-15 06:20  winkelma

	* life/lifealg/: SolverUMFPACK.cpp, SolverUMFPACK.hpp:

	bugfix: rebuild factorization if matrix changed

2005-06-14 22:34  fernandez

	* testsuite/test_ns_stab/: NavierStokesSolver.hpp,
	ipStabilization.hpp:

	Minor modification in orter to stay consistent.  1. += (IP
	stabilization) 2. bcHandler() I think we'd better do the merge
	between IP and SD

2005-06-14 13:19  gfourestey

	* life/lifesolver/NavierStokesSolverPC.hpp:

	reverting to BChandler() for BC getter

2005-06-14 13:09  gfourestey

	* life/: lifefem/meshMotion.hpp, lifesolver/FSIOperator.hpp:

	correct renaming for the harmonic extension BC

2005-06-14 12:40  gfourestey

	* life/lifesolver/VenantKirchhofSolver.hpp:

	reverting to BChandler() for BC getter

2005-06-14 12:38  gfourestey

	* life/lifesolver/: steklovPoincareBase.hpp,
	steklovPoincareBase.cpp:

	tentative implementation of the reduced fluid inverse operator

2005-06-14 12:35  gfourestey

	* life/lifesolver/: nsip.hpp, NavierStokesAleSolverPC.hpp,
	FSIOperator.hpp, NavierStokesHandler.hpp:

	reverting to BChandler() for BC getter

2005-06-14 12:33  gfourestey

	* life/lifefem/meshMotion.hpp:

	reverting to BChandler() instead of BCh_harmonicExtension for the
	BC getter

2005-06-13 17:37  prudhomm

	* life/lifesolver/NavierStokesWithFlux.hpp:

	update flux imposition strategy

2005-06-13 15:35  prudhomm

	* admin/lifev_check_compilers.m4:

	comment out opteron it does not seem to exist

2005-06-13 07:07  prudhomm

	* Makefile.headers:

	update headers

2005-06-13 07:07  prudhomm

	* testsuite/test_fhn/dataFhN.cpp:

	write c++ compliant code. Don't assume we use 'using'

2005-06-13 05:46  winkelma

	* life/lifesolver/nsip.hpp:

	fixing the bug how it was intended to be done...

2005-06-12 21:08  gfourestey

	* life/lifefilters/readMesh3D.hpp:

	debug telltales removed

2005-06-12 21:03  gfourestey

	* life/lifesolver/nsip.hpp:

	bug fix: condition number estimation is called only if PETSC solver
	is used

2005-06-12 20:29  gfourestey

	* life/lifefilters/: readMesh3D.cpp, readMesh3D.hpp:

	buf fix: numStoredFaces is properly initialized + identation

2005-06-10 14:59  winkelma

	* life/lifesolver/nsipterms.hpp:

	refined output...

2005-06-10 14:59  winkelma

	* life/lifesolver/nsip.hpp:

	* distinguish between Stokes matrix and constant matrix (buxfix) *
	renamed M_rhsU to M_rhsNoBC * improved output for additional
	information about linear solve * use accessors instead of direct
	access of protected inherited members * added some private
	accessors for smooth transition of code towards private   members
	of NavierStokesHandler without modifying the latter (yet)

2005-06-10 10:08  prudhomm

	* life/lifesolver/VenantKirchhofSolver.hpp:

	fixed a lot warnings about implicit typename

2005-06-09 22:43  lformaggia

	* life/lifefilters/mesh_util.hpp:

	fixed comment

2005-06-09 22:41  lformaggia

	* life/lifefilters/: readMesh3D.cpp, readMesh3D.hpp:

	INRIA meshes may now have internal faces.

2005-06-09 22:40  lformaggia

	* life/lifemesh/regionMesh3D.hpp:


	added method

	 extractEntityList(std::vector<ID> &, ReferenceGeometry r,
	EntityFlag const &)

2005-06-09 22:37  lformaggia

	* life/lifemesh/mesh_util_base.hpp:

	small modifications to make sure that faces are handled correctly

2005-06-09 22:35  lformaggia

	* life/lifemesh/: markers_base.cpp, markers_base.hpp:

	added utility that compare two marker flags

2005-06-09 22:33  lformaggia

	* life/lifefilters/Makefile.am:

	Added selectMarker

2005-06-09 22:32  lformaggia

	* life/lifefilters/: selectMarker.cpp, selectMarker.hpp:

	Extracts geometry entities with a given marker flag

2005-06-09 22:30  lformaggia

	* admin/: ac_check_umfpack.m4, lifev_default_paths.m4:

	Some other default paths!

2005-06-09 06:50  winkelma

	* life/lifesolver/nsipterms.hpp:

	* make sure M_elmatP is zeroed whenever needed (not done by
	ipstab_grad   any more) * output reformatted

2005-06-09 06:48  winkelma

	* life/lifefem/elemOper.cpp:

	adopted implicit convention that elemental operators should ADD and
	not REPLACE contributions to an elemental matrix for the IP
	operators ipstab_grad (both versions), ipstab_bgrad and
	ipstab_bagrad

2005-06-08 07:25  winkelma

	* life/lifesolver/nsip.hpp:

	use available BCHandler -> faster execution -> less memory
	consumption -> no difference in calculation (with respect to
	previous version)

2005-06-07 12:04  prudhomm

	* admin/lifev_check_compilers.m4:

	optimization options for pentium4 and opteron with --enable-opt2
	and --enable-opt3

2005-06-07 09:39  gfourestey

	* testsuite/test_fsi/: data, main.cpp, testsuite.at:

	testsuite update. SP is back in the loop

2005-06-07 09:38  gfourestey

	* life/lifealg/newton.hpp:

	bug correction of updateJacobian call

2005-06-07 06:10  winkelma

	* life/lifesolver/nsip.hpp:

	corrected (hopefully) substantial error in boundary force
	computation

2005-06-06 15:10  winkelma

	* life/lifesolver/nsip.hpp:

	zero accidentally deleted..

2005-06-06 15:05  winkelma

	* life/lifesolver/nsip.hpp:

	* added method calculateBoundaryForce * include boostmatrix.hpp
	only if needed * don't include AFSolvers.hpp for the moment

2005-06-06 14:15  gfourestey

	* life/lifesolver/: steklovPoincareBase.cpp,
	steklovPoincareBase.hpp:

	readded steklovPoincareBase class

2005-06-06 10:47  gfourestey

	* testsuite/test_fsi_qnewton/: main.cpp, operFS.cpp, operFS.hpp:

	updated version

2005-06-06 09:39  gfourestey

	* life/lifesolver/: reducedLinFluid.cpp, reducedLinFluid.hpp:

	taking into account the previous BCs modifications

2005-06-05 13:43  gfourestey

	* testsuite/test_fsi/: boundaryConditions.hpp, data, main.cpp,
	ud_functions.cpp:

	general update

2005-06-05 13:38  gfourestey

	* life/lifesolver/Makefile.am:

	update to take into account steklov-poincare class

2005-06-05 13:35  gfourestey

	* life/lifesolver/: exactJacobianBase.cpp, exactJacobianBase.hpp,
	fixedPointBase.cpp, fixedPointBase.hpp:

	BCs type modification update

2005-06-05 13:33  gfourestey

	* life/lifesolver/NavierStokesHandler.hpp:

	BC type modification

2005-06-05 13:32  gfourestey

	* life/lifesolver/: NavierStokesAleHandler.hpp,
	NavierStokesAleSolverPC.hpp:

	Harmonic extension is now a member of the FS solvers and general
	update

2005-06-05 13:30  gfourestey

	* life/lifesolver/VenantKirchhofSolver.hpp:

	Name modification of linearized solvers and general update

2005-06-05 13:28  gfourestey

	* life/lifesolver/: FSIOperator.cpp, FSIOperator.hpp,
	FSISolver.cpp, FSISolver.hpp:

	update to take into account the new BC type

2005-06-05 13:24  gfourestey

	* life/lifesolver/ElasticStructureHandler.hpp:

	BCs are now a boost shared pointer and the discplacement name is
	now more explicit

2005-06-05 13:15  gfourestey

	* life/lifefem/: meshMotion.cpp, meshMotion.hpp:

	Adapation to Miguel's modification and preparation to make the
	hamonic extension a member of the NS solver

2005-06-05 13:10  gfourestey

	* life/lifefem/: bcHandler.cpp, bcHandler.hpp:

	added constness to getBCbyName member function

2005-06-05 13:07  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	Non linear richardson shares the same interface as newton. The
	nonLinRichardson class will soon superceed the newton class for the
	F/S interface problem computation

2005-06-05 10:47  fernandez

	* testsuite/test_ns_stab/: NavierStokesSolver.hpp,
	sdStabilization.hpp:

	Two modifications: 1. bug fixed in the coefficient of the
	stabilizing mass term: rho*0.5 -> rho (rho already in the
	convective velocity) 2. time step passed via apply() in the SD
	stabilization

2005-06-05 10:37  fernandez

	* life/lifefem/: dataTime.cpp, dataTime.hpp:

	setter for time step

2005-05-30 15:55  winkelma

	* life/lifesolver/nsip.hpp:

	...and solver should be Aztec in cvs repository

2005-05-30 15:54  winkelma

	* life/lifesolver/nsip.hpp:

	Chrono is not needed in solveLinearSystem any more

2005-05-30 15:52  winkelma

	* life/lifesolver/nsip.hpp:

	* added adaptive rebuild of preconditioner

2005-05-27 13:58  winkelma

	* life/lifesolver/nsip.hpp:

	* added initializeStokes(...) * put solving of linear system and
	application of boundary conditions   in separate functions

2005-05-05 08:17  prudhomm

	* Makefile.headers, NEWS:

	updated NEWS (added gmres) updated Makefile.headers

2005-05-05 08:16  prudhomm

	* life/lifealg/gmres.hpp:

	added preconditioned gmres implementation it is not completely
	generic yet the "matrix" has to support and axpy_prod() function
	vectors are ublas vector but it shall change to more generic
	interface (ie replace ublas::)

2005-05-04 11:36  fernandez

	* testsuite/test_ns_stab/NavierStokesSolver.hpp:

	Convective velocity now contains \rho (equations aren't
	dimensionless)

2005-05-04 10:09  prudhomm

	* Makefile.headers, NEWS:

	updated NEWS(iteration) updated Makefile.headers

2005-05-04 10:07  prudhomm

	* life/lifealg/iteration.hpp:

	added an iterative solver iteration class handler concept first
	step before much better framework

2005-05-04 10:05  prudhomm

	* Makefile.headers:

	update Makefile.headers (preconditioner+givens)

2005-05-04 10:04  prudhomm

	* NEWS:

	update NEWS (preconditioner + givens)

2005-05-04 10:03  prudhomm

	* admin/lifev_create_subdirlist.m4:

	do not compile tools Makefiles are created though

2005-05-04 09:58  prudhomm

	* life/lifealg/givens.hpp:

	added an implementation of the	Givens rotation used by gmres for
	example

2005-05-04 09:56  prudhomm

	* life/lifealg/preconditioner.hpp:

	added the preconditioner concept

	you just need to redefine solve(x,y) and transSolve(x,y)

2005-05-02 10:43  fernandez

	* testsuite/test_ns_stab/meditPostProcess.hpp:

	GPL added

2005-05-02 10:41  fernandez

	* testsuite/test_ns_stab/: Makefile.am, NavierStokesSolver.hpp,
	data, ipStabilization.hpp, main.cpp, meditPostProcess.hpp,
	sdStabilization.hpp, ud_functions.hpp:

	Navier-Stokes solver using stabilized formualtions: stream-line
	difussion (sd) or interior-penalty (ip) For the moment, sd is only
	valid for P1

2005-05-02 10:30  fernandez

	* life/lifemesh/dataMesh.hpp:

	getters for dir and file

2005-05-01 21:49  fernandez

	* life/lifesolver/: NavierStokesHandler.hpp, dataNavierStokes.hpp:

	Gives the type of the pattern, and also a few lines of code for
	setting up the stabilization procedure (interior penalty (ip) or
	stream-line diffusion (sd)) from the data file

2005-05-01 21:35  fernandez

	* life/lifearray/pattern.hpp:

	MSRPatt constructor modified in order to handle in run-time both
	standard and edge coupled patterns

2005-05-01 21:13  fernandez

	* life/lifefilters/gmv_wrtrs.hpp:

	New writer allowing moving meshes

2005-04-29 10:50  winkelma

	* Makefile.headers:

	updated

2005-04-28 12:59  fernandez

	* testsuite/data/mesh/inria/cyl2D.mesh:

	The mesh around the cylinder

2005-04-28 11:39  fernandez

	* testsuite/test_ns_cyl_ipstab/main.cpp:

	Somme minor comments on the test...

2005-04-28 11:35  fernandez

	* testsuite/test_ns_cyl_ipstab/: Makefile.am, data, main.cpp,
	ud_functions.hpp:

	Data and source files. Flow around a cylinder using IP
	stabilization

2005-04-28 11:08  fernandez

	* testsuite/data/mesh/inria/Makefile.am:

	3D mesh around a cylinder

2005-04-28 08:20  winkelma

	* testsuite/test_ns_ipstab/: Makefile.am, NavierStokesSolverIP.hpp,
	ipStabilization.hpp, main.cpp:

	* moved testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp   to
	life/lifesolver/nsip.hpp * moved
	testsuite/test_ns_ipstab/ipStabilization.hpp   to
	life/lifesolver/nsipterms.hpp

2005-04-28 08:19  winkelma

	* life/lifesolver/: nsip.hpp, nsipterms.hpp:

	* moved testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp   to
	life/lifesolver/nsip.hpp * moved
	testsuite/test_ns_ipstab/ipStabilization.hpp   to
	life/lifesolver/nsipterms.hpp * put class IPStabilization into
	subnamespace details

2005-04-28 06:03  winkelma

	* testsuite/test_ns_ipstab/ethierSteinman.cpp:

	fix warnings

2005-04-28 06:02  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	use Aztec solver by default

2005-04-27 15:34  winkelma

	* testsuite/test_ns_ipstab/ud_functions.cpp:

	got rid of some warnings

2005-04-27 15:31  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	* added GPL header * modified preprocessor definitions for choosing
	the linear solver * added possibility for using umfpack * use boost
	matrix for umfpack and petsc * added initialize function from file
	(restart, by M. Prosi) * remove mean pressure only if appropriate
	(thanks to M. Fernandez)

2005-04-27 15:20  winkelma

	* testsuite/test_ns_ipstab/: ethierSteinman.cpp,
	ethierSteinman.hpp, ud_functions.cpp, ud_functions.hpp:

	provide x0 instead of u0

2005-04-27 15:20  winkelma

	* testsuite/test_ns_ipstab/main.cpp:

	initialize with x0 instead of xexact (may not exist)

2005-04-27 12:44  winkelma

	* life/lifesolver/NavierStokesAleHandler.hpp:

	reflect interface change of HarmonicExtension

2005-04-27 11:40  fernandez

	* testsuite/test_fsi_qnewton/data:

	Modified data file with [mesh_motion/aztec]

2005-04-27 11:39  fernandez

	* testsuite/test_fsi/data:

	Now contains [mesh_motion/aztec] Aztec options for the Harmonic
	Extension

2005-04-27 11:36  fernandez

	* life/lifefem/meshMotion.hpp:

	Now uses the Aztec interface Linear system options given from data
	file [mesh_motion/aztec]

2005-04-20 13:48  prudhomm

	* admin/: ac_check_boost.m4, ac_check_life.m4:

	minor fixes for m4 scripts

2005-04-18 09:17  vmartin

	* life/lifesolver/NavierStokesHandler.hpp:

	removed some comments.

2005-04-18 09:11  vmartin

	* life/lifesolver/NavierStokesHandler.hpp:

	corrected the bug. (I forgot to modify a function).

2005-04-15 08:48  vmartin

	* life/lifesolver/NavierStokesHandler.hpp:

	corrected 2 bugs in the computation of the mean pressure.  added
	another way to retrieve some internal faces:   now one can get all
	the (internal) faces (with the associated   dof) that live on a
	given plane --defined by (a,b,c,d) s.t.    ax + by + cz + d = 0.
	working on putting all this into an external class.

2005-04-08 16:28  gfourestey

	* Makefile.headers:

	hopefully this makefile header will work

2005-04-08 15:14  gfourestey

	* Makefile.headers:

	bug fix. quasiNewton.hpp is no longer referenced

2005-04-08 14:00  gfourestey

	* life/lifesolver/Makefile.am:

	temparily removing steklov-poincare in Makefile

2005-04-08 11:52  gfourestey

	* Makefile.headers:

	temparily removing steklov-poincare headers

2005-04-08 11:50  gfourestey

	* testsuite/test_coupling_3d0d/main_FSI0d.cpp:

	temparily disabling steklov-poincare method

2005-04-08 11:48  gfourestey

	* life/lifesolver/steklovPoincareBase.cpp,
	life/lifesolver/steklovPoincareBase.hpp, testsuite/test_fsi/data,
	testsuite/test_fsi/main.cpp, testsuite/test_fsi/testsuite.at:

	steklovPoincareBase is temporarily removed from the directory until
	paper is out

2005-04-08 10:39  prudhomm

	* life/lifearray/vecUnknown.cpp:

	fix compilation for gcc-4.0

2005-04-04 07:32  winkelma

	* testsuite/test_levelset_ipstab/main.cpp:

	* reordered includes according to libraries * allow to set problem
	data from data file * use uniform velocity instead of vortex *
	handle boundary conditions (Dirichlet all over for the moment) * do
	not fall in round off error trap for counting iterations * save
	mass before and after reinitialization

2005-04-04 07:31  winkelma

	* testsuite/test_levelset_ipstab/main.hpp:

	* added class uniform for an uniform advection * turned function
	sphere into static method sphere::phi

2005-04-04 07:13  winkelma

	* life/lifesolver/HyperbolicSolverIP.hpp:

	* treat boundary conditions * small documentation bugfix

2005-04-01 07:59  winkelma

	* life/lifesolver/HyperbolicSolverIP.hpp:

	did it the wrong way around...

2005-04-01 07:48  winkelma

	* life/lifesolver/LevelSetSolver.hpp:

	* moved (const) CurrentFE& fe() from LevelSetSolver to
	HyperbolicSolver * access now private data members of
	HyperbolicSolver through accessors * reformatted

2005-04-01 07:45  winkelma

	* life/lifesolver/HyperbolicSolverIP.hpp:

	* make sure reinitialization also takes effect at beginning * made
	all data private and provide const accessors where needed * moved
	public CurrentFE& fe() from LevelSetSolver to HyperbolicSolver *
	added protected non-const accessor to unknown function for
	LevelSetSolver

2005-03-31 10:37  winkelma

	* life/lifesolver/NSSolver2FluidsMixed.hpp:

	reflect changes in class NavierStokesHandler (protected _M_BCh_u ->
	private _M_BCh_fluid)

2005-03-31 09:06  winkelma

	* life/lifesolver/HyperbolicSolverIP.hpp:

	* call bdf.shift_right at beginning of the following timeAdvance
	in order to allow reinitialization to influence vectors in bdf *
	initialize _M_t as well

2005-03-23 22:06  gfourestey

	* life/lifesolver/: FSIOperator.hpp, FSISolver.cpp, FSISolver.hpp:

	added BCs setters in FSISolver class

2005-03-23 21:24  gfourestey

	* life/lifesolver/exactJacobianBase.cpp:

	fixed the bug that made the exact jacobian crash when using the
	reduced linear fluid

2005-03-23 21:23  gfourestey

	* life/lifesolver/FSIOperator.hpp:

	added setters for BCs definied outside the FSIOperator class

2005-03-23 17:34  gfourestey

	* life/lifesolver/FSIOperator.hpp:

	setters for all the BCs

2005-03-23 17:05  gfourestey

	* life/lifesolver/: FSIOperator.cpp, FSIOperator.hpp,
	NavierStokesAleSolverPC.hpp, VenantKirchhofSolver.hpp,
	exactJacobianBase.cpp, reducedLinFluid.hpp,
	steklovPoincareBase.cpp, steklovPoincareBase.hpp:

	all BCs now use BC Vector Interfaces member in FSIOperator class.
	Next step is moving all BCs declaration to the
	boundaryCondition.hpp file

2005-03-22 18:05  gfourestey

	* life/lifesolver/: FSIOperator.cpp, FSIOperator.hpp,
	FSISolver.cpp, exactJacobianBase.cpp, fixedPointBase.cpp,
	steklovPoincareBase.cpp, steklovPoincareBase.hpp:

	BCs can now be defined outside the FS operators. Next step is to
	finish moving old dofInterface formulation for all FS operators to
	see if everything works fine. Then, every BCs will be moved to the
	file boundaryConditions.hpp in the test_fsi folder.

2005-03-22 14:12  gfourestey

	* life/lifefem/: bcVector.cpp, bcVector.hpp:

	added default constructor

2005-03-22 11:04  gfourestey

	* life/lifesolver/: FSIOperator.hpp, exactJacobianBase.hpp,
	fixedPointBase.hpp, steklovPoincareBase.cpp,
	steklovPoincareBase.hpp:

	moving all linearized BCs definition to FSIOperator class

2005-03-22 11:02  gfourestey

	* life/lifefem/: bcHandler.cpp, bcHandler.hpp:

	added copy constructor and assignment operator

2005-03-21 21:04  gfourestey

	* life/lifesolver/: ElasticStructureHandler.hpp, FSISolver.cpp,
	FSISolver.hpp, NavierStokesHandler.hpp:

	enabling BC-less constructors

2005-03-21 21:03  gfourestey

	* life/lifefem/meshMotion.hpp:

	enabling BC-less constructor

2005-03-21 17:59  gfourestey

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	making the testsuite solvers compliant with the new BC types

2005-03-21 17:58  gfourestey

	* life/lifesolver/: FSIOperator.cpp, FSIOperator.hpp,
	FSISolver.cpp, NavierStokesAleSolverPC.hpp,
	NavierStokesSolverPC.hpp, VenantKirchhofSolver.hpp,
	steklovPoincareBase.cpp:

	making the solvers compliant with the new BC types

2005-03-21 17:57  gfourestey

	* life/lifesolver/NavierStokesHandler.hpp:

	BCh_u is now called BCh_fluid, is a raw pointer and is private.

2005-03-21 17:56  gfourestey

	* life/lifesolver/ElasticStructureHandler.hpp:

	BCh is now called BCh_solid, is a raw pointer and is private.

2005-03-21 17:55  gfourestey

	* life/lifefem/: meshMotion.cpp, meshMotion.hpp:

	BCh_mesh is now called BCh_HarmonicExtension, is a raw pointer and
	is private.

2005-03-20 23:13  gfourestey

	* life/lifesolver/: ElasticStructureHandler.hpp, FSIOperator.cpp,
	FSIOperator.hpp, FSISolver.cpp, FSISolver.hpp,
	NavierStokesAleHandler.hpp, NavierStokesAleSolverPC.hpp,
	NavierStokesHandler.hpp, VenantKirchhofSolver.hpp:

	added BC free constructor

2005-03-20 23:09  gfourestey

	* life/lifefem/: meshMotion.hpp, meshMotion.cpp:

	added BC free constructor

2005-03-20 23:07  gfourestey

	* life/lifealg/algebraic_facto.hpp:

	full essential flag can be set outside the constructor

2005-03-20 07:26  prudhomm

	* configure.in.in:

	spaces around = where missing this should fix your problem Gilles

2005-03-19 23:03  gfourestey

	* testsuite/test_fsi/main.cpp:

	non FS interface BCs are now defined in boundaryConditions.hpp

2005-03-19 12:52  prudhomm

	* NEWS:

	updated

2005-03-19 12:25  prudhomm

	* Makefile.headers, configure.in.in, life/lifecore/Makefile.am:

	updated to make application work use program_options from boost
	1.32 but make it optional

2005-03-19 12:24  prudhomm

	* life/lifecore/factory.hpp:

	removed 
 and got rid of warnings

2005-03-19 12:23  prudhomm

	* life/lifecore/: about.cpp, about.hpp, application.cpp,
	application.hpp:

	* AboutData =========== about data class to store information about
	the application will be useful for lifev apps and playground *
	Application ============= Application base class can be derived to
	create MPIApplication,PETSCApplication,...

2005-03-18 21:56  gfourestey

	* testsuite/test_fsi/boundaryConditions.hpp:

	added file containing the BCs

2005-03-18 21:55  gfourestey

	* life/lifesolver/: FSISolver.cpp, FSISolver.hpp,
	NavierStokesHandler.hpp:

	first step toward moving all BC in the main

2005-03-18 15:14  gfourestey

	* life/lifesolver/: ElasticStructureHandler.hpp, FSISolver.hpp,
	NavierStokesAleHandler.hpp, NavierStokesHandler.hpp:

	bug fixes.

2005-03-18 11:24  prosi

	* testsuite/test_ns_bcvec/main.cpp, testsuite/test_ns_cyl/main.cpp,
	testsuite/test_ns_cyl_flux/main.cpp,
	testsuite/test_ns_ipstab/main.cpp,
	life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/convDiffReactHandler.hpp,
	testsuite/test_mass_coupling/main.cpp,
	testsuite/test_masstransport/main.cpp,
	testsuite/test_onedmodel/oneDModelSolver.cpp:

	debuging initialization procedure

2005-03-18 09:27  gfourestey

	* life/lifesolver/NavierStokesAleHandler.hpp:

	restart procedure up and running. for now, it uses medit files, but
	this is going to change soon

2005-03-17 17:38  gfourestey

	* life/lifesolver/ElasticStructureHandler.hpp,
	life/lifesolver/FSIOperator.cpp, life/lifesolver/FSISolver.hpp,
	life/lifesolver/NavierStokesAleHandler.hpp,
	life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/exactJacobianBase.cpp,
	life/lifesolver/reducedLinFluid.cpp,
	life/lifesolver/steklovPoincareBase.cpp,
	testsuite/test_fsi/main.cpp:

	debuging the restart procedure

2005-03-17 11:26  gfourestey

	* life/lifesolver/NavierStokesAleHandler.hpp:

	amplification factor for the fluid set in the data file in the same
	way that the solid factor (i.e in fluid/miscellaneous/factor) + bug
	fix

2005-03-17 11:18  prudhomm

	* admin/: ac_check_boost.m4, ltmain.sh:

	update ltmain.sh added boost::date_time and boost::program_options
	libs

2005-03-17 11:04  gfourestey

	* life/lifesolver/ElasticStructureHandler.hpp:

	reverting back to old save name since the restart procedure will
	use a more general format

2005-03-17 10:56  gfourestey

	* life/lifesolver/: ElasticStructureHandler.hpp,
	NavierStokesAleHandler.hpp:

	reverting back to old save name since the restart procedure will
	use a more general format

2005-03-16 16:18  winkelma

	* life/lifesolver/AFSolvers.hpp:

	align output

2005-03-16 09:55  gfourestey

	* testsuite/test_fsi/main.cpp:

	modified restart initialization in main

2005-03-15 18:06  gfourestey

	* life/lifesolver/NavierStokesAleHandler.hpp:

	tentative restart implementation based on medit solution files.
	Warning: the name of the velocity solutions file in the fluid is
	now velF instead of vel

2005-03-15 18:02  gfourestey

	* life/lifesolver/: ElasticStructureHandler.hpp, FSISolver.cpp,
	FSISolver.hpp:

	tentative restart implementation based on medit solution files

2005-03-15 07:50  winkelma

	* life/lifearray/boostmatrix.hpp:

	initialize matrix to 0 instead of 1 in logical nonzero positions

2005-03-14 14:43  ddipietro

	* life/lifearray/boostmatrix.hpp:

	Changed the way matrix chain multiplication is done.

2005-03-14 08:27  ddipietro

	* testsuite/test_ns_2fluids/ud_functions.hpp:

	Some cosmetic change.

2005-03-14 08:27  ddipietro

	* testsuite/test_ns_2fluids/: ethierSteinman.cpp,
	ethierSteinman.hpp:

	Classes for the Ethier-Steinman test.

2005-03-14 08:26  ddipietro

	* testsuite/test_ns_2fluids/main.cpp:

	Some cosmetic changes on text output.

2005-03-14 08:25  ddipietro

	* life/lifefem/elemOper2Fluids.hpp:

	Re-added lumped mass operator + cosmetic changes.

2005-03-14 08:24  ddipietro

	* life/lifesolver/NSSolver2FluidsMixed.hpp:

	Fixed a bug due to boost::numeric::ublas::compressed_matrix format
	implementation. When adding the lumped mass matrix to the stiffness
	matrix the pattern was lost and matrix assembling became slow. Now
	the lumped mass is added at the element level.

2005-03-12 21:44  gfourestey

	* life/lifesolver/steklovPoincareBase.cpp:

	bug fixed

2005-03-11 21:31  gfourestey

	* life/lifesolver/: reducedLinFluid.cpp, reducedLinFluid.hpp,
	steklovPoincareBase.cpp:

	tentative inv reduced fluid operator. residual projection on the
	interface still missing

2005-03-11 15:50  gfourestey

	* life/lifesolver/: reducedLinFluid.cpp, reducedLinFluid.hpp,
	steklovPoincareBase.cpp, steklovPoincareBase.hpp:

	first attempt to compute the inverse of the reduced fluid operator:
	computing the strong residual on the FS interface

2005-03-09 07:36  ddipietro

	* life/lifealg/PressureMatrixSolver.hpp:

	A pressure matrix solver for Stokes (and N-S) equations. The
	boost::numeric::ublas::compressed_matrix interface is assumed.

2005-03-08 17:53  gfourestey

	* life/lifesolver/steklovPoincareBase.cpp:

	corrected non empty vector a initialization bug + cosmetic changes

2005-03-08 10:40  prudhomm

	* life/lifefem/dofInterfaceHandler.cpp:

	Fixed warning: get rid of always true condition !

2005-03-08 10:32  prudhomm

	* life/lifealg/: SolverAztec.cpp, dataAztec.cpp:

	CVS_SILENT

	fix for g++-3.4

2005-03-08 10:32  prudhomm

	* life/lifecore/debug.hpp:

	CVS_SILENT

	removed warning

2005-03-08 10:21  prudhomm

	* .cvsignore:

	CVS_SILENT

	ignore

2005-03-08 10:16  prudhomm

	* Makefile.am:

	use deps.am

2005-03-08 10:16  prudhomm

	* admin/deps.am:

	some dependencies to make sure files are automatically regenerated
	properly

2005-03-08 10:15  prudhomm

	* testsuite/test_ns_2fluids/.cvsignore:

	ignore

2005-03-08 09:51  prudhomm

	* life.kdevelop:

	update kdevelop file for kdevelop 3.1.2

2005-03-08 09:49  prudhomm

	* life/lifefilters/readMesh2D.hpp:

	added incomplete(read untested) gsmh reader for 2D meshes

2005-03-08 09:48  prudhomm

	* life/lifemesh/regionMesh2D.hpp:

	CVS_SILENT

2005-03-08 09:47  prudhomm

	* life/lifefilters/readMesh3D.hpp:

	some docu

2005-03-08 09:47  prudhomm

	* life/lifefilters/: importer.cpp, importer.hpp:

	added importing 2d meshes

2005-03-08 09:46  prudhomm

	* admin/cvs.sh:

	added two more methods: dist and create_subdirs

2005-03-08 09:46  prudhomm

	* admin/ac_check_boost.m4:

	minor fix: disable ac_try_compile until a fix is found

2005-03-08 09:45  prudhomm

	* Makefile.am, Makefile.headers:

	minor fixes

2005-03-08 09:43  prudhomm

	* life/lifemesh/regionMesh2D.hpp:

	fixes, pour regionMesh2D back in shape

2005-03-08 09:41  prudhomm

	* life/lifemesh/regionMesh3D.hpp:

	minor fixes, homogeneisation of 2D and 3D classes

2005-03-08 09:34  prudhomm

	* testsuite/lifecore/test_boost.cpp:

	fixed warnings

2005-03-07 13:58  ddipietro

	* testsuite/test_ns_2fluids/main.cpp:

	test update

2005-03-07 13:48  ddipietro

	* life/lifesolver/: NSSolver2FluidsMixed.hpp, AFSolvers.hpp:

	Some cosmetics.

2005-03-07 09:59  ddipietro

	* life/lifearray/boostmatrix.hpp:

	Added spy() member for DiagonalBoostMatrix class.

2005-03-06 12:03  prudhomm

	* life/lifemesh/regionMesh2D.hpp:

	make RegionMesh2D standard C++ mesh I don't know yet if this class
	actually works though will see soon

2005-03-06 11:49  prudhomm

	* life/lifefilters/importer.hpp:

	added some documentation

2005-03-03 09:04  winkelma

	* testsuite/test_ns_2fluids/main.cpp:

	* use P2/P1/P2 * save pressure

2005-03-03 09:00  winkelma

	* life/lifesolver/NSSolver2FluidsMixed.hpp:

	make mass matrix handling more consistent (hopefully)

2005-03-03 08:59  winkelma

	* life/lifesolver/AFSolvers.hpp:

	slight performance improve

2005-03-03 08:06  winkelma

	* life/lifearray/boostmatrix.hpp:

	pass matrices by reference for lumping. Thanks to Christophe for
	pointing out

2005-03-03 07:34  winkelma

	* life/lifesolver/NSSolver2FluidsMixed.hpp:

	pass lumped mass matrix weighted correctly to Yosida solver

2005-03-03 07:33  winkelma

	* life/lifearray/boostmatrix.hpp:

	added copy constructor and operator= to DiagonalBoostMatrix

2005-03-03 07:06  winkelma

	* life/lifesolver/NSSolver2FluidsMixed.hpp:

	* renamed dofLSFunction() to lsDof() * added fe_ls() * read solver
	options for Yosida u and p solvers from yosida subsection *
	commented out spying of matrices

2005-03-03 07:05  winkelma

	* life/lifesolver/AFSolvers.hpp:

	added timing output in Yosida::solve

2005-03-02 11:56  winkelma

	* life/lifesolver/NSSolver2FluidsMixed.hpp:

	use the right macro keyword

2005-03-02 11:55  winkelma

	* life/lifealg/SolverPETSC.hpp:

	make sure lifeconfig.h is included

2005-03-02 10:00  ddipietro

	* life/lifesolver/NSSolver2FluidsMixed.hpp:

	Fixed one bug in the initialization of _M_M_L member (lumped mass
	matrix) + cosmetic changes.

2005-03-02 08:39  winkelma

	* life/lifearray/boostmatrix.hpp:

	faster and hopefully safer access to element in lumpRowSum

2005-03-01 16:49  winkelma

	* life/lifesolver/NSSolver2FluidsMixed.hpp:

	* typedef for lumped mass type * store lumped mass as member * pass
	lumped mass to Yosida solver * use lumped mass for time advancement

2005-03-01 16:44  winkelma

	* life/lifesolver/AFSolvers.hpp:

	* adapted syntax of invert * pass matrices as _const_ references *
	commented modifiers (side effects!), to be realized with smart
	pointers   if needed * commented schur(), replaced by schurProduct
	from boostmatrix.hpp * added myself as an author of this file

2005-03-01 16:38  winkelma

	* life/lifearray/boostmatrix.hpp:

	added empty constructor

2005-03-01 15:37  winkelma

	* life/lifefem/currentFE.hpp:

	better error message, by Daniele

2005-03-01 14:42  winkelma

	* life/lifefem/elemOper.cpp:

	fixed index bug in ipstab_bagrad, found by Daniele

2005-03-01 13:33  winkelma

	* life/lifearray/: CSRMatrix.hpp, sparseArray.cpp:

	fixed two compiler warnings only occurring in optimized mode

2005-03-01 11:48  ddipietro

	* testsuite/: Makefile.am, testsuite.at:

	Modified to include test_ns_2fluids

2005-03-01 11:47  ddipietro

	* testsuite/test_ns_2fluids/Makefile.am:

	Makefile.am for 2 fluid test

2005-03-01 11:46  ddipietro

	* testsuite/test_ns_2fluids/: data, main.cpp, main.hpp,
	testsuite.at, ud_functions.hpp:

	A test for 2 fluid Navier-Stokes solver.

2005-03-01 11:42  ddipietro

	* life/lifefem/elemOper2Fluids.hpp:

	Added lumped mass operator

2005-03-01 11:42  ddipietro

	* life/lifesolver/AFSolvers.hpp:

	Algebraic factorization NS solvers, meant to be used with matrices
	compliant with boost::compressed_matrix interface

2005-03-01 11:41  ddipietro

	* life/lifesolver/: NSSolver2FluidsMixed.hpp, dataNS2Fluids.hpp:

	Data class and 2 fluid Navier-Stokes handler

2005-03-01 11:40  ddipietro

	* life/lifesolver/NavierStokesHandler.hpp:

	Modified as to be able to let NSSolver2Fluids inherit from it.
	NSSolver2Fluids class definition will be committed later.

2005-03-01 11:13  ddipietro

	* life/lifearray/boostmatrix.hpp:

	Added specialized constructors for column_major and row_major
	storage schemes.

2005-03-01 11:05  winkelma

	* testsuite/test_levelset_ipstab/data:

	* separate sections for Aztec and PETSc * specify FEM (P1/P2)
	explicitly

2005-03-01 11:03  winkelma

	* testsuite/test_levelset_ipstab/main.hpp:

	fix compiler warning

2005-03-01 11:02  winkelma

	* life/lifesolver/HyperbolicSolverIP.hpp:

	* allow for use of PETSc solver * always use CSR pattern for
	constructing boost matrices * output of number of iterations if
	available * separate sections in data file for Aztec and PETSc *
	set _M_A_steady and _M_M to zero before filling in
	compute_M_A_steady() * use prefix L_ for macro defines

2005-03-01 10:15  winkelma

	* life/lifearray/pattern.hpp:

	documented new public member functions isThere

2005-03-01 09:49  ddipietro

	* life/lifearray/boostmatrix.hpp:

	Fixed a little bug: Added << operator in assertion.

2005-03-01 09:46  ddipietro

	* life/lifearray/pattern.hpp:

	Modified so to allow the usage of BoostMatrix class. Main
	modifications:

	   - member isThere is now public. It is used in BoostMatrix
	pattern construction
	   - added member isThere to MixedPattern so to make its interface
	compliant with the requirements of BoostMatrix constructors

2005-03-01 09:43  ddipietro

	* life/lifesolver/LevelSetSolver.hpp:

	Some minor modifications to make everything compliant with
	HyperbolicSolverIP class.

2005-03-01 09:43  ddipietro

	* life/lifesolver/HyperbolicSolverIP.hpp:

	Modified compiler directive to switch between boost and MSR
	matrices. Other minor modifications.

2005-03-01 08:29  winkelma

	* testsuite/test_onedmodel/triDiagLU.hpp:

	use clapack header from life/lifealg

2005-03-01 08:25  winkelma

	* testsuite/test_onedmodel/oneDModelSolver.cpp:

	fix compiler warnings

2005-03-01 08:25  winkelma

	* life/lifearray/tridiagMatrix.hpp:

	fix compiler warning

2005-02-28 15:10  winkelma

	* life/lifearray/boostmatrix.hpp:

	* made zeros() faster for column_major storage scheme * added
	schurProduct (for row_major matrices only at the moment)

2005-02-28 13:30  winkelma

	* life/lifearray/boostmatrix.hpp:

	do not erase nonzero pattern when setting matrix to zero
	(faster...)

2005-02-28 10:18  winkelma

	* life/lifealg/SolverPETSC.hpp:

	added setMatrix(...) method for compressed boost matrices

2005-02-28 08:36  winkelma

	* life/lifearray/boostmatrix.hpp:

	* fixed typo bug * added class DiagonalBoostMatrix

2005-02-25 17:12  prudhomm

	* admin/ac_check_boost.m4, admin/cvs.sh,
	admin/lifev_create_subdirlist.m4, tools/configure.in.in,
	Makefile.am, configure.in.in:

	added DO_NOT_COMPILE facility if some features are not available in
	the system (eg boost 1.32) fixed CVS build failure

2005-02-25 14:19  winkelma

	* life/lifefem/: bcVector.cpp, defQuadRuleFE.cpp:

	removed warnings

2005-02-25 13:59  winkelma

	* admin/lifev_default_paths.m4:

	reordered such that special locations should be preferred over
	standard ones order: MOX, CMCS, /opt, CMCS-cluster, /usr,
	/usr/local

2005-02-24 19:49  prudhomm

	* tools/inspect/inspect.cpp, Makefile.am:

	added a report rule

2005-02-24 19:21  prudhomm

	* .cvsignore, Makefile.am, tools/.cvsignore, tools/Makefile.am,
	tools/inspect/Makefile.am:

	make make distcheck work

2005-02-24 17:05  prudhomm

	* life/lifealg/: cblas.h, clapack.h:

	they have benn renamed with a .hpp extension

2005-02-24 16:58  prudhomm

	* Makefile.am, Makefile.headers:

	update

2005-02-24 15:28  winkelma

	* life/lifearray/boostmatrix.hpp:

	* rewritten diagonalize_row, zero_row and diagonalize with
	iterators (faster) * rewritten spy such that saving is done in
	matlab format * include of pattern.hpp is not needed any more as
	pattern is templatized * comment out unused variable
	__max_nnz_per_line * removed warning about slowness of assembly (is
	not so slow anymore) * renamed parameter iRow to r in
	diagonalize_row

2005-02-24 14:11  prudhomm

	* tools/: inspect/.cvsignore, inspect/Makefile.am, inspect/README,
	inspect/copyright_check.cpp, inspect/copyright_check.hpp,
	inspect/crlf_check.cpp, inspect/crlf_check.hpp,
	inspect/cvs_iterator.hpp, inspect/inspect.cpp,
	inspect/inspector.hpp, inspect/license_check.cpp,
	inspect/license_check.hpp, inspect/link_check.cpp,
	inspect/link_check.hpp, inspect/long_name_check.cpp,
	inspect/long_name_check.hpp, inspect/minmax_check.cpp,
	inspect/minmax_check.hpp, inspect/tab_check.cpp,
	inspect/tab_check.hpp, inspect/wrong_line_ends_test.cpp,
	fix-include, fix-tabs, update-headers:

	added some tools to detect standard mistakes and/or violations of
	policies

2005-02-24 14:09  prudhomm

	* Makefile.headers:

	contains the headers

2005-02-24 14:07  prudhomm

	* testsuite/test_postproc/main.cpp,
	testsuite/test_postproc/main.hpp, testsuite/test_q1/main.cpp,
	testsuite/test_q1/main.hpp,
	testsuite/test_onedmodel/basicOneDMesh.hpp,
	testsuite/test_onedmodel/dataOneDModel.hpp,
	testsuite/test_onedmodel/dofOneD.hpp,
	testsuite/test_onedmodel/gracePlot.hpp,
	testsuite/test_onedmodel/interface2Vessels.cpp,
	testsuite/test_onedmodel/main.cpp,
	testsuite/test_onedmodel/main_twotubes.cpp,
	testsuite/test_onedmodel/oneDModelHandler.hpp,
	testsuite/test_onedmodel/oneDModelSolver.hpp,
	testsuite/test_onedmodel/oneDNonLinModelParam.hpp,
	testsuite/test_onedmodel/triDiagCholesky.hpp,
	testsuite/test_onedmodel/triDiagLU.hpp,
	testsuite/test_onedmodel/vectorFunction1D.hpp,
	testsuite/test_p2/main.cpp, testsuite/test_p2/main.hpp,
	testsuite/test_ns_sstress/main.cpp,
	testsuite/test_ns_sstress/ud_functions.hpp,
	testsuite/test_ns_sstress/ud_functions_ns.hpp,
	testsuite/test_nsale/main.cpp,
	testsuite/test_nsale/ud_functions.hpp, life/lifesolver/nsip.hpp,
	testsuite/test_ns_cyl_flux/main.cpp,
	testsuite/test_ns_cyl_flux/main_new.cpp,
	testsuite/test_ns_cyl_flux/main_ns_flux.cpp,
	testsuite/test_ns_cyl_flux/main_ns_twofluxes.cpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/ethierSteinman.hpp,
	testsuite/test_ns_ipstab/main.cpp,
	testsuite/test_ns_ipstab/ud_functions.hpp,
	testsuite/test_ns_bcvec/main.cpp, testsuite/test_ns_bdf/main.cpp,
	testsuite/test_ns_cyl/main.cpp,
	testsuite/test_masstransport/main.cpp,
	testsuite/test_masstransport/ud_functions.hpp,
	testsuite/test_mesh/test_mesh.cpp, testsuite/test_mixte/main.cpp,
	testsuite/test_mixte/main.hpp, testsuite/test_naturalbc/main.cpp,
	testsuite/test_naturalbc/main.hpp,
	testsuite/test_linearelasticity/main.cpp,
	testsuite/test_linearelasticity/ud_functions.hpp,
	testsuite/test_mass_coupling/main.cpp,
	testsuite/test_mass_coupling/ud_functions.hpp,
	testsuite/test_fsi_qnewton/main.cpp,
	testsuite/test_fsi_qnewton/operFS.cpp,
	testsuite/test_fsi_qnewton/operFS.hpp,
	testsuite/test_laplacian/main.cpp,
	testsuite/test_laplacian/main.hpp,
	testsuite/test_levelset_ipstab/main.cpp,
	testsuite/test_levelset_ipstab/main.hpp,
	testsuite/test_fhn/dataFhN.hpp, testsuite/test_fhn/fhnHandler.cpp,
	testsuite/test_fhn/fhnHandler.hpp,
	testsuite/test_fhn/fhnSolver.cpp, testsuite/test_fhn/main.cpp,
	testsuite/test_fhn/user_fct.cpp, testsuite/test_fhn/user_fct.hpp,
	testsuite/test_fhn/user_functor.cpp,
	testsuite/test_fhn/user_functor.hpp, testsuite/test_fsi/main.cpp,
	testsuite/test_fsi/ud_functions.hpp,
	testsuite/test_essentialbc/main.cpp,
	testsuite/test_essentialbc/main.hpp, testsuite/test_darcy/main.cpp,
	testsuite/test_darcy/user_diffusion.cpp,
	testsuite/test_darcy/user_diffusion.hpp,
	testsuite/test_dg/main.cpp, testsuite/test_dg/main.hpp,
	testsuite/test_dg/ud_functions.hpp, testsuite/test_bdf/main.cpp,
	testsuite/test_bdf/main.hpp,
	testsuite/test_coupling_3d0d/C3d0d.hpp,
	testsuite/test_coupling_3d0d/main_FSI0d.cpp,
	testsuite/test_coupling_3d0d/main_NS0d.cpp,
	testsuite/test_coupling_3d0d/zeroDModelSolver.hpp,
	testsuite/lifefem/test_hasOnlyEssential.cpp,
	testsuite/lifefilters/main.cpp, testsuite/lifefilters/main.hpp,
	testsuite/lifesolver/main.cpp,
	testsuite/lifesolver/ud_functions.hpp,
	testsuite/lifecore/test_boost.cpp,
	testsuite/lifecore/test_debug.cpp,
	testsuite/lifecore/test_factory.cpp,
	testsuite/lifecore/test_getpot.cpp, testsuite/lifecore/test_pf.cpp,
	testsuite/lifecore/test_rotate.cpp,
	testsuite/lifecore/test_singleton.cpp,
	testsuite/lifealg/Makefile.am, testsuite/lifealg/MatrixTest.cpp,
	testsuite/lifealg/MatrixTest.hpp,
	testsuite/lifealg/test_linearsolvers.cpp,
	testsuite/lifealg/test_petsc.cpp,
	testsuite/lifealg/test_umfpack.cpp,
	testsuite/lifearray/test_simple_vect.cpp,
	life/lifesolver/ElasticStructureHandler.hpp,
	life/lifesolver/FSIOperator.cpp, life/lifesolver/FSIOperator.hpp,
	life/lifesolver/FSISolver.cpp, life/lifesolver/FSISolver.hpp,
	life/lifesolver/HyperbolicSolverIP.hpp,
	life/lifesolver/LevelSetSolver.hpp, life/lifesolver/Makefile.am,
	life/lifesolver/NavierStokesAleHandler.hpp,
	life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/NavierStokesSolverPC.hpp,
	life/lifesolver/NavierStokesWithFlux.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/convDiffReactHandler.hpp,
	life/lifesolver/convDiffReactSolverPC.hpp,
	life/lifesolver/darcyHandler.hpp, life/lifesolver/darcySolver.cpp,
	life/lifesolver/darcySolver.hpp,
	life/lifesolver/darcySolverBase.hpp,
	life/lifesolver/dataConvDiffReact.hpp,
	life/lifesolver/dataDarcy.hpp,
	life/lifesolver/dataElasticStructure.hpp,
	life/lifesolver/dataNavierStokes.hpp,
	life/lifesolver/dataSimplifiedStructure.hpp,
	life/lifesolver/exactJacobianBase.cpp,
	life/lifesolver/exactJacobianBase.hpp,
	life/lifesolver/fixedPointBase.cpp,
	life/lifesolver/fixedPointBase.hpp,
	life/lifesolver/parabolicSolver.hpp,
	life/lifesolver/reducedLinFluid.cpp,
	life/lifesolver/reducedLinFluid.hpp,
	life/lifesolver/simplifiedStructure.hpp,
	life/lifesolver/steklovPoincareBase.cpp,
	life/lifesolver/steklovPoincareBase.hpp,
	life/lifesolver/timeSolver.cpp, life/lifesolver/timeSolver.hpp,
	life/lifemesh/Makefile.am, life/lifemesh/bareItems.cpp,
	life/lifemesh/bareItems.hpp, life/lifemesh/basisElSh.cpp,
	life/lifemesh/basisElSh.hpp, life/lifemesh/dataMesh.hpp,
	life/lifemesh/geo0D.cpp, life/lifemesh/geo0D.hpp,
	life/lifemesh/geoElement.hpp, life/lifemesh/geoND.hpp,
	life/lifemesh/identifier.cpp, life/lifemesh/identifier.hpp,
	life/lifemesh/markers.hpp, life/lifemesh/markers_base.cpp,
	life/lifemesh/markers_base.hpp, life/lifemesh/meshEntity.hpp,
	life/lifemesh/mesh_util_base.cpp, life/lifemesh/mesh_util_base.hpp,
	life/lifemesh/regionMesh2D.hpp, life/lifemesh/regionMesh3D.cpp,
	life/lifemesh/regionMesh3D.hpp,
	life/lifemesh/subDomainNeighbors.cpp,
	life/lifemesh/subDomainNeighbors.hpp, life/lifefilters/Makefile.am,
	life/lifefilters/ensight7Writer.hpp,
	life/lifefilters/gmv_wrtrs.hpp, life/lifefilters/importer.cpp,
	life/lifefilters/importer.hpp, life/lifefilters/medit_wrtrs.cpp,
	life/lifefilters/medit_wrtrs.hpp, life/lifefilters/mesh_util.hpp,
	life/lifefilters/openDX_wrtrs.cpp, life/lifefilters/postProc.hpp,
	life/lifefilters/readMesh2D.hpp, life/lifefilters/readMesh3D.cpp,
	life/lifefilters/readMesh3D.hpp, life/lifefilters/vtk_wrtrs.cpp,
	life/lifefilters/vtk_wrtrs.hpp, life/lifefem/Makefile.am,
	life/lifefem/assemb.cpp, life/lifefem/assemb.hpp,
	life/lifefem/bcCond.cpp, life/lifefem/bcCond.hpp,
	life/lifefem/bcFunction.cpp, life/lifefem/bcFunction.hpp,
	life/lifefem/bcHandler.cpp, life/lifefem/bcHandler.hpp,
	life/lifefem/bcManage.hpp, life/lifefem/bcVector.cpp,
	life/lifefem/bcVector.hpp, life/lifefem/bdf.cpp,
	life/lifefem/bdf.hpp, life/lifefem/bdfNS.cpp,
	life/lifefem/bdfNS.hpp, life/lifefem/currentBFDG.cpp,
	life/lifefem/currentBFDG.hpp, life/lifefem/currentBdDG.cpp,
	life/lifefem/currentBdDG.hpp, life/lifefem/currentBdFE.cpp,
	life/lifefem/currentBdFE.hpp, life/lifefem/currentFE.cpp,
	life/lifefem/currentFE.hpp, life/lifefem/currentFEDG.cpp,
	life/lifefem/currentFEDG.hpp, life/lifefem/currentHdivFE.cpp,
	life/lifefem/currentHdivFE.hpp, life/lifefem/currentIFDG.cpp,
	life/lifefem/currentIFDG.hpp, life/lifefem/dataTime.cpp,
	life/lifefem/dataTime.hpp, life/lifefem/dataTransient.cpp,
	life/lifefem/dataTransient.hpp, life/lifefem/defQuadRuleFE.cpp,
	life/lifefem/dof.cpp, life/lifefem/dof.hpp,
	life/lifefem/dofByFace.cpp, life/lifefem/dofByFace.hpp,
	life/lifefem/dofDG.cpp, life/lifefem/dofDG.hpp,
	life/lifefem/dofInterface3Dto2D.cpp,
	life/lifefem/dofInterface3Dto2D.hpp,
	life/lifefem/dofInterface3Dto3D.cpp,
	life/lifefem/dofInterface3Dto3D.hpp,
	life/lifefem/dofInterfaceBase.cpp,
	life/lifefem/dofInterfaceBase.hpp,
	life/lifefem/dofInterfaceHandler.cpp,
	life/lifefem/dofInterfaceHandler.hpp, life/lifefem/elemOper.cpp,
	life/lifefem/elemOper.hpp, life/lifefem/elemOper2Fluids.hpp,
	life/lifefem/elemOper_ext.hpp, life/lifefem/geoMap.cpp,
	life/lifefem/geoMap.hpp, life/lifefem/geoMapDG.cpp,
	life/lifefem/geoMapDG.hpp, life/lifefem/interpolate.hpp,
	life/lifefem/localDofPattern.cpp, life/lifefem/localDofPattern.hpp,
	life/lifefem/meshMotion.cpp, life/lifefem/meshMotion.hpp,
	life/lifefem/postProc.hpp, life/lifefem/quadRule.cpp,
	life/lifefem/quadRule.hpp, life/lifefem/refEle.cpp,
	life/lifefem/refEle.hpp, life/lifefem/refEleDG.cpp,
	life/lifefem/refEleDG.hpp, life/lifefem/refFE.cpp,
	life/lifefem/refFE.hpp, life/lifefem/refFEDG.cpp,
	life/lifefem/refFEDG.hpp, life/lifefem/refHdivFE.cpp,
	life/lifefem/refHdivFE.hpp, life/lifefem/refHybridFE.cpp,
	life/lifefem/refHybridFE.hpp, life/lifefem/regionMesh3D_ALE.cpp,
	life/lifefem/regionMesh3D_ALE.hpp, life/lifefem/sobolevNorms.hpp,
	life/lifefem/staticBdFE.cpp, life/lifefem/staticBdFE.hpp,
	life/lifefem/subelements.hpp, life/lifefem/v2elemVec.cpp,
	life/lifefem/v2elemVec.hpp, life/lifefem/values.hpp,
	life/lifecore/GetPot.cpp, life/lifecore/Makefile.am,
	life/lifecore/SmartAssert.cpp, life/lifecore/chrono.hpp,
	life/lifecore/dataString.cpp, life/lifecore/debug.cpp,
	life/lifecore/debug.hpp, life/lifecore/factory.hpp,
	life/lifecore/life.hpp, life/lifecore/lifeassert.hpp,
	life/lifecore/lifeversion.cpp, life/lifecore/lifeversion.hpp,
	life/lifecore/singleton.hpp, life/lifecore/switch.cpp,
	life/lifecore/switch.hpp, life/lifecore/typeInfo.cpp,
	life/lifecore/util_string.cpp, life/lifearray/Makefile.am,
	life/lifearray/RNM.hpp, life/lifearray/RNM_tpl.hpp,
	life/lifearray/boostmatrix.hpp, life/lifearray/elemMat.cpp,
	life/lifearray/elemMat.hpp, life/lifearray/elemVec.cpp,
	life/lifearray/elemVec.hpp, life/lifearray/pattern.cpp,
	life/lifearray/pattern.hpp, life/lifearray/sparseArray.cpp,
	life/lifearray/sparseArray.hpp, life/lifearray/tab.hpp,
	life/lifearray/tridiagMatrix.hpp, life/lifearray/variables.hpp,
	life/lifearray/vecUnknown.cpp, life/lifearray/vecUnknown.hpp,
	life/lifealg/Makefile.am, life/lifealg/SolverAztec.cpp,
	life/lifealg/SolverAztec.hpp, life/lifealg/SolverPETSC.cpp,
	life/lifealg/SolverPETSC.hpp, life/lifealg/SolverUMFPACK.cpp,
	life/lifealg/SolverUMFPACK.hpp, life/lifealg/algebraic_facto.hpp,
	life/lifealg/cblas.hpp, life/lifealg/clapack.hpp,
	life/lifealg/dataAztec.cpp, life/lifealg/dataAztec.hpp,
	life/lifealg/dataNewton.cpp, life/lifealg/dataNewton.hpp,
	life/lifealg/generalizedAitken.hpp, life/lifealg/newton.hpp,
	life/lifealg/nonLinRichardson.hpp, .cvsignore, Makefile.am, NEWS,
	configure.in.in, life.kdevelop:

	applied yabu

2005-02-24 13:51  ddipietro

	* life/lifearray/boostmatrix.hpp:

	Modified constructor so to speed up fill time (hopefully)

2005-02-23 08:28  winkelma

	* life/lifearray/boostmatrix.hpp:

	Initial version: A wrapper class which allows for using boost uBlas
	matrices in existing LifeV routines. WARNING: Quite a few parts are
	slow at the moment.

2005-02-22 17:52  prosi

	* life/lifefem/bcManage.hpp:

	fixed bug in MixteBC - vector are given on the mesh nodes not on
	the quadrature nodes - Interpolation of the coefficients needed!

2005-02-22 11:28  ddipietro

	* testsuite/test_levelset_ipstab/main.cpp:

	Added variable quadrature rules according to the type of element
	chosen.

2005-02-22 11:24  ddipietro

	* life/lifesolver/: HyperbolicSolverIP.hpp, LevelSetSolver.hpp:

	Moved the second currentFE object to a member of HyperbolicSolverIP
	class and added some report features.

2005-02-21 15:44  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	fix warnings

2005-02-21 14:55  winkelma

	* life/lifefilters/mesh_util.hpp:

	give more precise hints when Euler formulas aren't satisfied

2005-02-21 12:39  prudhomm

	* admin/ax_create_pkgconfig_info.m4:

	create pkgconfig info for lifev

2005-02-21 12:39  prudhomm

	* admin/ac_check_boost.m4:

	add boost::test libraries and define associated make variables	-
	boost_prg_exec_monitor_lib  - boost_test_exec_monitor_lib  -
	boost_unit_test_framework_lib

2005-02-21 08:10  winkelma

	* life/lifearray/blockMatrix.hpp:

	fix warning

2005-02-21 07:52  winkelma

	* testsuite/lifefem/test_hasOnlyEssential.cpp:

	fix warnings

2005-02-20 22:51  prudhomm

	* admin/ac_check_life.m4:

	update added new ac_check_life to check for LifeV presence make the
	simple application/template work

2005-02-20 08:26  prudhomm

	* life/lifecore/life.hpp:

	eval_if.hpp is only in boost.132

2005-02-19 22:41  prudhomm

	* life/lifefem/Makefile.am:

	add sublements.hpp to Makefile.am

	if we ever want to use LifeV as a library include_HEADERS needs to
	be properly updated whenever we add a new header file

2005-02-19 22:29  prudhomm

	* life/lifecore/debug.cpp:

	removed warnings

2005-02-19 22:28  prudhomm

	* life/lifecore/Makefile.am:

	added lifeassert.hpp

2005-02-19 22:17  prudhomm

	* life/lifecore/lifeV.hpp:

	removed lifeV.hpp

2005-02-19 22:15  prudhomm

	* life/lifecore/lifeversion.hpp:

	some info

2005-02-19 22:00  prudhomm

	* life/lifecore/: SmartAssert.cpp, SmartAssert.hpp:

	fixed interface

2005-02-19 22:00  prudhomm

	* life/: lifecore/switch.cpp, lifemesh/subDomainNeighbors.cpp:

	removed warnings

2005-02-19 21:49  prudhomm

	* NEWS:

	typo

2005-02-19 21:48  prudhomm

	* testsuite/: test_onedmodel/basicOneDMesh.hpp,
	test_onedmodel/dataOneDModel.hpp, test_onedmodel/dofOneD.hpp,
	test_onedmodel/main.cpp, test_onedmodel/main_twotubes.cpp,
	test_onedmodel/oneDModelHandler.hpp,
	test_onedmodel/oneDNonLinModelParam.hpp,
	test_onedmodel/triDiagCholesky.hpp, test_onedmodel/triDiagLU.hpp,
	test_onedmodel/vectorFunction1D.hpp, test_p2/main.hpp,
	test_postproc/main.hpp, test_q1/main.hpp,
	test_ns_cyl_flux/main.cpp, test_ns_cyl_flux/main_new.cpp,
	test_ns_cyl_flux/main_ns_flux.cpp,
	test_ns_cyl_flux/main_ns_twofluxes.cpp,
	test_ns_ipstab/ethierSteinman.hpp, test_ns_ipstab/main.cpp,
	test_ns_ipstab/ud_functions.hpp, test_ns_sstress/main.cpp,
	test_nsale/main.cpp, test_ns_bdf/main.cpp, test_ns_cyl/main.cpp,
	test_mass_coupling/main.cpp, test_masstransport/main.cpp,
	test_mixte/main.hpp, test_naturalbc/main.hpp,
	test_ns_bcvec/main.cpp, test_fsi_qnewton/main.cpp,
	test_laplacian/main.hpp, test_levelset_ipstab/main.hpp,
	test_linearelasticity/main.cpp,
	test_linearelasticity/ud_functions.hpp, test_bdf/main.hpp,
	test_coupling_3d0d/main_FSI0d.cpp,
	test_coupling_3d0d/main_NS0d.cpp, test_essentialbc/main.hpp,
	test_fsi/main.cpp, test_fsi/ud_functions.hpp,
	lifecore/test_boost.cpp, lifefilters/main.hpp, lifesolver/main.cpp:

	renamed lifeV.hpp to life.hpp for consistency

2005-02-19 21:47  prudhomm

	* configure.in.in:

	new versioning system

2005-02-19 21:47  prudhomm

	* NEWS:

	updated NEWS

2005-02-19 21:46  prudhomm

	* life/: lifesolver/ElasticStructureHandler.hpp,
	lifesolver/FSIOperator.cpp, lifesolver/FSISolver.cpp,
	lifesolver/NavierStokesHandler.hpp,
	lifesolver/VenantKirchhofSolver.hpp,
	lifesolver/convDiffReactHandler.hpp,
	lifesolver/darcySolverBase.hpp, lifesolver/dataConvDiffReact.hpp,
	lifesolver/dataElasticStructure.hpp,
	lifesolver/dataNavierStokes.hpp,
	lifesolver/dataSimplifiedStructure.hpp,
	lifesolver/exactJacobianBase.cpp, lifesolver/fixedPointBase.cpp,
	lifesolver/reducedLinFluid.hpp, lifesolver/simplifiedStructure.hpp,
	lifesolver/steklovPoincareBase.cpp, lifemesh/bareItems.hpp,
	lifemesh/basisElSh.hpp, lifemesh/dataMesh.hpp,
	lifemesh/geoElement.hpp, lifemesh/identifier.hpp,
	lifemesh/meshEntity.hpp, lifemesh/mesh_util_base.cpp,
	lifemesh/mesh_util_base.hpp, lifemesh/regionMesh2D.hpp,
	lifemesh/regionMesh3D.hpp, lifemesh/subDomainNeighbors.hpp,
	lifefem/bcCond.cpp, lifefem/bcCond.hpp, lifefem/bcFunction.cpp,
	lifefem/bcHandler.cpp, lifefem/bcManage.hpp, lifefem/bcVector.hpp,
	lifefem/bdf.hpp, lifefem/bdfNS.hpp, lifefem/currentBdDG.hpp,
	lifefem/currentBdFE.hpp, lifefem/currentFE.hpp,
	lifefem/currentFEDG.hpp, lifefem/currentHdivFE.hpp,
	lifefem/dataTime.hpp, lifefem/dof.hpp, lifefem/dofByFace.hpp,
	lifefem/dofDG.hpp, lifefem/dofInterfaceBase.hpp,
	lifefem/dofInterfaceHandler.hpp, lifefem/elemOper.cpp,
	lifefem/elemOper.hpp, lifefem/elemOper2Fluids.hpp,
	lifefem/elemOper_ext.hpp, lifefem/geoMap.hpp, lifefem/geoMapDG.hpp,
	lifefem/localDofPattern.hpp, lifefem/meshMotion.hpp,
	lifefem/postProc.hpp, lifefem/quadRule.hpp, lifefem/refEle.hpp,
	lifefem/refFE.hpp, lifefem/refFEDG.hpp, lifefem/refHdivFE.hpp,
	lifefem/refHybridFE.hpp, lifefem/regionMesh3D_ALE.hpp,
	lifefem/sobolevNorms.hpp, lifefem/staticBdFE.hpp,
	lifefem/v2elemVec.hpp, lifefem/values.hpp,
	lifefilters/ensight7Writer.hpp, lifefilters/gmv_wrtrs.hpp,
	lifefilters/medit_wrtrs.hpp, lifefilters/openDX_wrtrs.cpp,
	lifefilters/postProc.hpp, lifefilters/vtk_wrtrs.hpp,
	lifearray/elemVec.hpp, lifearray/pattern.cpp,
	lifearray/pattern.hpp, lifearray/sparseArray.cpp,
	lifearray/sparseArray.hpp, lifearray/tab.hpp,
	lifearray/vecUnknown.hpp, lifealg/algebraic_facto.hpp,
	lifealg/dataNewton.hpp, lifealg/generalizedAitken.hpp,
	lifealg/nonLinRichardson.hpp:

	renamed lifeV.hpp to life.hpp fixed tons of warnings thanks to GCC
	(3.3) and new warnings in configure

2005-02-19 21:43  prudhomm

	* life/lifecore/: Makefile.am, switch.cpp, typeInfo.cpp:

	renamed lifeV.hpp to life.hpp update Makefile.am with new files and
	renamed files

2005-02-19 21:43  prudhomm

	* life/lifecore/: life.hpp, lifeassert.hpp, lifemacros.hpp,
	lifeversion.cpp, lifeversion.hpp:

	renamed lifeV.hpp to life.hpp split life.hpp into lifemacros.hpp,
	lifeversion.hpp and lifeassert.hpp

2005-02-19 21:42  prudhomm

	* life/lifecore/: SmartAssert.cpp, SmartAssert.hpp:

	added smart assertion from an article of Alexandrescu

	allows LIFEV_ASSERT( cond).error("")

2005-02-19 21:18  prudhomm

	* admin/lifev_check_compilers.m4:

	more warnings. we are too lazy so let's GCC help us being less lazy

2005-02-19 21:17  prudhomm

	* admin/ac_check_boost.m4:

	added boost::regex check added per-boost-library variable: eg
	boost_regex_lib

2005-02-19 21:17  prudhomm

	* admin/Doxyfile.global:

	update doxygen config

2005-02-18 14:56  ddipietro

	* life/lifesolver/HyperbolicSolverIP.hpp:

	Fixed a bug. When changing SolverAztec's matrix a segmentation
	fault took place. The problem was fixed by creating an instance of
	the linear solver inside the timeAdvance() member, but it should be
	further investigated.

2005-02-18 08:23  prosi

	* testsuite/test_masstransport/: data, testsuite.at:

	set back test to one timestep and update testsuite.at for automatic
	test

2005-02-17 16:31  ddipietro

	* life/lifesolver/HyperbolicSolverIP.hpp:

	Now recompute both the stabilization and the advection term at
	every time step. Needed to obtain the proper scaling of
	stabilization parameter.

2005-02-17 15:56  ddipietro

	* life/lifesolver/HyperbolicSolverIP.hpp:

	Fixed a bug in stabilization term

2005-02-17 15:44  prosi

	* life/lifesolver/dataConvDiffReact.hpp:

	seperated mass transport class from fluid data

2005-02-17 15:43  prosi

	* testsuite/test_masstransport/: data, main.cpp:

	check consistency of the time steps between fluid and mass
	transport solver

2005-02-17 14:43  prosi

	* life/lifesolver/convDiffReactSolverPC.hpp:

	uuups - deleted forgotten abort() in the solver

2005-02-17 13:36  winkelma

	* life/lifesolver/LevelSetSolver.hpp:

	debug output of number of faces found during build_interface

2005-02-17 13:35  winkelma

	* life/lifesolver/HyperbolicSolverIP.hpp:

	dded stabilization with correct scaling with respect to advection
	speed

2005-02-17 13:34  winkelma

	* life/lifefem/: elemOper.cpp, elemOper.hpp:

	* added ipstab_bagrad, ip stabilization of gradient jumps suitably
	 weighted according to advection velocity * fixed some typos in
	comments and messages

2005-02-17 07:40  winkelma

	* life/lifefilters/mesh_util.hpp:

	* fixed bug in checking for euler formulae   ( type: ( a - b == 0 )
	instead of ( a - b ) == 0 ) * improved readability of source code
	and error messages

2005-02-17 07:29  winkelma

	* life/lifemesh/mesh_util_base.hpp:

	increase readability of source code and error messages

2005-02-16 17:55  winkelma

	* life/lifefem/: defQuadRuleFE.cpp, quadRule.hpp:

	added 6 point quadrature rule on triangle

2005-02-16 17:39  winkelma

	* testsuite/test_levelset_ipstab/main.cpp:

	* P2 instead of P1, with change of quadrature rules * some
	cosmetics

2005-02-16 17:39  winkelma

	* testsuite/test_levelset_ipstab/data:

	* diminish stabilization parameter (P1->P2) * use backward Euler
	instead of BDF2

2005-02-16 17:30  winkelma

	* life/lifesolver/HyperbolicSolverIP.hpp:

	* change choice and scaling of stabilization term, fixing some bug
	* preparing scaling with velocity (commented)

2005-02-16 17:29  winkelma

	* life/lifefem/: defQuadRuleFE.cpp, quadRule.hpp:

	added 7 point quadrature rule on triangle

2005-02-16 11:22  winkelma

	* life/lifesolver/LevelSetSolver.hpp:

	bug fixed in ASSERT: cannot convert std::string to bool

2005-02-15 15:49  winkelma

	* life/lifefem/subelements.hpp:

	bug fix: numbering conventions...

2005-02-15 15:47  winkelma

	* life/lifesolver/LevelSetSolver.hpp:

	bug fix: jacobian matrix must be updated in order to get correctly
	mapped points...

2005-02-15 13:36  ddipietro

	* life/lifesolver/LevelSetSolver.hpp:

	Fixed a little bug in include section.

2005-02-15 11:52  winkelma

	* life/lifesolver/LevelSetSolver.hpp:

	* use subelements for building interface * removed accessor for Dof
	(is already inherited from HyperbolicSolver) * improved
	documentation * cosmetics

2005-02-15 11:48  winkelma

	* life/lifesolver/: LevelSetSolverUtils.hpp,
	HyperbolicSolverIP.hpp:

	* improved documentation * cosmetics

2005-02-15 11:45  winkelma

	* life/lifefem/subelements.hpp:

	initial version

2005-02-15 11:20  ddipietro

	* life/lifefem/elemOper2Fluids.hpp:

	Added grad operator allowing for a different space for the velocity
	field.

2005-02-14 16:47  prosi

	* life/lifesolver/convDiffReactSolverPC.hpp:

	updated interpolation routine - should work now for domains with
	holes - stents ;-)

2005-02-14 13:42  ddipietro

	* life/lifemesh/dataMesh.hpp:

	Added gmsh file support

2005-02-14 11:02  ddipietro

	* testsuite/test_levelset_ipstab/main.cpp:

	Main file for the levelset test

2005-02-14 10:50  ddipietro

	* life/lifesolver/: HyperbolicSolverIP.hpp, LevelSetSolver.hpp,
	LevelSetSolverUtils.hpp:

	Fixed some bugs in reinitialization routines.

2005-02-11 13:30  vmartin

	* testsuite/README:

	Added some advices to avoid silly bugs.  Hope it will help!

2005-02-11 12:55  vmartin

	* testsuite/test_darcy/Makefile.am:

	rm blanks

2005-02-11 12:54  vmartin

	* testsuite/data/mesh/inria/Makefile.am:

	now the meshes of the heart are declared in Makefile.am

2005-02-11 12:53  vmartin

	* testsuite/: Makefile.am, testsuite.at:

	automatic testing of fhn

2005-02-11 11:24  vmartin

	* testsuite/test_fhn/: Makefile.am, data, testsuite.at:

	automatic testing for fhn solver

2005-02-11 09:39  vmartin

	* life/lifesolver/: FSISolver.cpp, NavierStokesHandler.hpp:

	modif: compute also the mean pressure on sections of the tube.

2005-02-11 09:38  vmartin

	* testsuite/test_ns_cyl/main.cpp:

	modif: compute also the mean pressure on sections, now.

2005-02-09 17:02  prosi

	* life/lifefilters/ensight7Writer.hpp:

	removed dependency on NavierStokesSolverPC.hpp

2005-02-09 14:54  vmartin

	* life/lifesolver/NavierStokesHandler.hpp:

	removed the bug in NSHandler. I had an ASSERT too strong that I did
	not test (in opt mode).

2005-02-09 13:28  ddipietro

	* life/lifefilters/openDX_wrtrs.hpp:

	Fixed some bugs.

2005-02-09 11:50  ddipietro

	* life/lifefem/elemOper.cpp:

	Corrected div operator.

2005-02-07 16:09  gerbeau

	* testsuite/test_ns_cyl/: data_sectionfluxes, main.cpp:

	cleaning a bit

2005-02-07 16:07  gerbeau

	* testsuite/test_ns_cyl/: data, data_sectionfluxes, main.cpp:

	exemple of data file for the computation of the area and flux at
	sections

2005-02-07 16:05  gerbeau

	* life/lifesolver/: NavierStokesHandler.hpp, dataNavierStokes.hpp:

	Commit done by vm.  added a way to compute at each time step the
	mean flux and the area of a section in the NS solver.  A first
	pre-process is done to get the faces that live on the sought
	sections (search on points).  Then a special post-process is
	performed (it is called at each time step).

	This function heavily depends on the mesh : OK for cylinders!

2005-02-07 12:03  winkelma

	* life/lifefem/defQuadRuleFE.cpp:

	added/corrected degree of exactness

2005-02-07 12:01  winkelma

	* life/lifearray/blockMatrix.hpp:

	forgot template parameter

2005-02-04 11:22  winkelma

	* life/lifealg/: SolverAztec.cpp, SolverAztec.hpp:

	added option 'printOption' to setOptionsFromGetPot(...)

2005-02-04 08:03  winkelma

	* life/lifearray/Makefile.am:

	added blockMatrix.hpp

2005-02-04 08:02  winkelma

	* life/lifearray/blockMatrix.hpp:

	matrix consisting of 4 blocks (MSR,CSR;CSR,MSR)

2005-02-03 13:20  prudhomm

	* testsuite/test_levelset_ipstab/main.cpp:

	get rid of ud_functions.hpp as it does not seem to be needed

2005-02-03 13:12  prudhomm

	* testsuite/test_levelset_ipstab/Makefile.am:

	there is no ud_functions.hpp

2005-02-03 13:02  prudhomm

	* NEWS:

	update with elemOper2Fluids

2005-02-03 13:02  prudhomm

	* life/lifefem/Makefile.am:

	added elemOper2Fluids.hpp to the list of includes

2005-02-03 13:00  prudhomm

	* configure.in.in:

	bump up version to 0.6.90@CVSDATE@

2005-02-03 12:59  prudhomm

	* NEWS:

	updated NEWS

2005-02-03 12:58  prudhomm

	* testsuite/: Makefile.am, test_levelset_ipstab/.cvsignore:

	ignore Makefile.in added test_levelset_ipstab in the list of
	SUBDIRS

2005-02-03 12:56  prudhomm

	* life/lifesolver/LevelSetSolver_utils.hpp:

	LevelSetSolver_utils.hpp was renamed to LevelSetSolverUtils.hpp

2005-02-03 12:54  prudhomm

	* life/lifesolver/Makefile.am:

	added LevelSetSolver and HyperbolicSolverIP to includes

2005-02-03 10:15  ddipietro

	* life/lifefem/elemOper2Fluids.hpp:

	2 fluid operators.

2005-02-02 16:03  ddipietro

	* life/lifesolver/: LevelSetSolver.hpp, LevelSetSolverUtils.hpp:

	Corrected some more name-incoherences.

2005-02-02 15:45  ddipietro

	* life/lifesolver/LevelSetSolver.hpp:

	Amended name incoherence.

2005-02-02 15:45  ddipietro

	* life/lifesolver/LevelSetSolverUtils.hpp:

	Amended name-incoherence.

2005-02-02 14:10  ddipietro

	* life/lifefem/elemOper2Fluids.hpp:

	Classical finite element operators for the two-fluid case.

2005-02-02 14:05  ddipietro

	* testsuite/test_levelset_ipstab/: data, main.cpp:

	Incorporate modifications in HyperbolicSolverIP and LevelSetSolver
	classes.

2005-02-02 14:05  ddipietro

	* life/lifesolver/: HyperbolicSolverIP.hpp, LevelSetSolver.hpp:

	A little modification: now the user must specify the getpot section
	for solver data. This is particularly useful when more than one
	solver is used at the same time, since it allows for a more cunning
	organization of the data file.

2005-02-02 13:29  ddipietro

	* life/lifesolver/HyperbolicSolverIP.hpp,
	life/lifesolver/LevelSetSolver.hpp,
	testsuite/test_levelset_ipstab/main.cpp:

	Fixed a little bug.

2005-02-02 13:29  ddipietro

	* life/lifefilters/openDX_wrtrs.hpp:

	Fixed a bug: now the vector is passed by reference (as it should
	be).

2005-02-02 10:46  ddipietro

	* testsuite/test_levelset_ipstab/main.cpp:

	Incorporate modifications of classes HyperbolicSolverIP and
	LevelSetSolver

2005-02-02 10:45  ddipietro

	* life/lifesolver/: HyperbolicSolverIP.hpp, LevelSetSolver.hpp:

	Modified to get geoMap from MeshData.

2005-02-02 10:39  ddipietro

	* testsuite/test_levelset_ipstab/: data, main.cpp:

	Test level set solver modified to incorporate modifications in
	HyperbolicSolverIP and LevelSetSolver classes.

2005-02-02 10:38  ddipietro

	* life/lifesolver/: HyperbolicSolverIP.hpp, LevelSetSolver.hpp:

	Solvers modified to use MeshData.

2005-01-31 13:59  ddipietro

	* testsuite/test_levelset_ipstab/main.cpp:

	Fixed a little bug. Now test should be ok.

2005-01-31 13:59  ddipietro

	* testsuite/test_levelset_ipstab/testsuite.at:

	Fixed a little bug

2005-01-31 11:14  ddipietro

	* testsuite/test_levelset_ipstab/: Makefile.am, data, main.cpp,
	main.hpp, testsuite.at:

	Level set solver test.

2005-01-31 10:49  ddipietro

	* testsuite/Makefile.am:

	Added stuff for test_levelset_ipstab

2005-01-31 10:49  ddipietro

	* testsuite/testsuite.at:

	Added stuff for levelset_ipstab test

2005-01-31 10:29  ddipietro

	* life/lifefilters/openDX_wrtrs.hpp:

	Temporarily removed element-wise writer: sorry, I should have taken
	a close llok at it before committing, and it was really too
	out-of-date to leave it there.

2005-01-31 10:25  ddipietro

	* life/lifefilters/openDX_wrtrs.hpp:

	Added an element-wise OpenDX writer suitable for DG-FEM.

2005-01-31 10:18  ddipietro

	* life/lifefilters/openDX_wrtrs.hpp:

	Fixed a bug in openDX writer.

2005-01-31 09:19  ddipietro

	* life/lifesolver/HyperbolicSolverIP.hpp:

	Corrected some comments left from the old version.

2005-01-31 09:06  ddipietro

	* life/lifesolver/: LevelSetSolver.hpp, LevelSetSolver_utils.hpp:

	New implementation of level set solver based on the hyperbolic
	solver class along with some utilities. Now direct reinitialization
	of the interface is supported.

2005-01-31 09:04  ddipietro

	* life/lifesolver/HyperbolicSolverIP.hpp:

	A hyperbolic solver class. This class serves as the base class for
	the new level set solver. At present time only linear hyperbolic
	problems can be handled.

2005-01-31 09:00  ddipietro

	* life/lifesolver/LevelSetSolver_utils.hpp:

	Removed old version of LevelSetSolver utilities. See next commits
	for the new version.

2005-01-31 08:59  ddipietro

	* life/lifesolver/LevelSetSolver.hpp:

	Removed old version of level set solver. For details about the new
	one see next commits.

2005-01-28 09:03  ddipietro

	* life/lifesolver/LevelSetSolver_utils.hpp:

	Sorry, I forgot the LGPL header.

2005-01-28 08:39  ddipietro

	* life/lifesolver/: LevelSetSolver.hpp, LevelSetSolver_utils.hpp:

	A 3D level set solver for multi-fluid problems. Interface handling
	features willbe provided in a future commit.

2005-01-27 14:03  prudhomm

	* HOWTO.release:

	improved howto a tad

2005-01-27 13:57  prudhomm

	* testsuite/Makefile.am:

	added test_nsale, but disabled at compilation stage

2005-01-27 13:56  prudhomm

	* testsuite/test_fsi_qnewton/Makefile.am:

	there is no testsuite.at in test_fsi_qnewton

2005-01-27 11:13  prudhomm

	* testsuite/test_nsale/Makefile.am:

	include the code in any case and the mesh

2005-01-27 11:12  prudhomm

	* testsuite/test_nsale/: Makefile.am, main.cpp:

	disable test_nsale as it does not compile

2005-01-27 11:06  prudhomm

	* HOWTO.release, NEWS:

	added release HOWTO updated NEWS

2005-01-27 10:44  prudhomm

	* life/lifecore/debug.cpp:

	get rid od std::ends

2005-01-27 10:19  prudhomm

	* testsuite/: lifefem/.cvsignore, test_fsi_qnewton/.cvsignore,
	test_nsale/.cvsignore:

	ignore

2005-01-27 10:19  prudhomm

	* configure.in.in:

	prepare to tag 0.6.0

	new features  * curl-curl (CV)	* parabolic solver with nonlinear
	boundary conditions (MM)  * more FSI: instroduce quasi_newton, and
	fixes for FSIOperators	(MF, GF)

2005-01-26 13:41  gfourestey

	* testsuite/testsuite.at:

	test_fsi nightly test is back online

2005-01-26 13:40  gfourestey

	* testsuite/test_fsi/testsuite.at:

	new data file for the automatic test. exactJacobian and
	steklovPoincare are now tested with and without the reduced
	linearized fluid

2005-01-26 13:38  gfourestey

	* testsuite/test_fsi/main.cpp:

	modified successful conditions so that the automatic test does not
	fail for the reduced fluid test

2005-01-26 13:37  gfourestey

	* NEWS:

	updated news

2005-01-26 11:11  gfourestey

	* testsuite/test_fsi/main.cpp:

	fixed bugs so that the nightly automatic test can work

2005-01-25 21:50  gfourestey

	* life/lifesolver/reducedLinFluid.cpp:

	reduced fluid now works for steklovPoincare

2005-01-25 18:12  gfourestey

	* life/lifesolver/: reducedLinFluid.cpp, reducedLinFluid.hpp:

	reduced Linaer Fluid almost working for steklovPoincare ...

2005-01-25 18:08  gfourestey

	* life/lifesolver/: FSIOperator.hpp, exactJacobianBase.cpp,
	steklovPoincareBase.cpp:

	name change last (hopefully) modification

2005-01-22 22:53  gfourestey

	* life/lifesolver/ElasticStructureHandler.hpp,
	life/lifesolver/FSISolver.cpp, life/lifesolver/FSISolver.hpp,
	life/lifesolver/Makefile.am,
	life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/dataElasticStructure.hpp,
	life/lifesolver/exactJacobianBase.cpp,
	life/lifesolver/exactJacobianBase.hpp,
	life/lifesolver/fixedPointBase.cpp,
	life/lifesolver/fixedPointBase.hpp,
	life/lifesolver/steklovPoincareBase.cpp,
	life/lifesolver/steklovPoincareBase.hpp,
	testsuite/test_fsi/main.cpp:

	FSIOperator reducedLinFLuid new class name update

2005-01-22 22:51  gfourestey

	* life/lifesolver/: reducedLinFluid.cpp, reducedLinFluid.hpp:

	class reducedLinFluid. reducedLinFluid is the new name of
	quasiNewton

2005-01-22 22:50  gfourestey

	* life/lifesolver/: FSIOperator.cpp, FSIOperator.hpp:

	class FSIOperator. FSIOperator is the new name of operFS

2005-01-22 22:48  gfourestey

	* life/lifesolver/: quasiNewton.cpp, quasiNewton.hpp:

	quasiNewton removed from repository. quasiNewton is now called
	reducedLinFluid

2005-01-22 22:47  gfourestey

	* life/lifesolver/: operFS.cpp, operFS.hpp:

	operFS removed from repository. operFS is now called FSIOperator

2005-01-21 18:07  gfourestey

	* life/lifesolver/: steklovPoincareBase.cpp, exactJacobianBase.cpp:

	general update. quasi newton still buggy for steklovPoincare

2005-01-21 18:07  gfourestey

	* life/lifesolver/: quasiNewton.cpp, quasiNewton.hpp:

	general update. still buggy for steklovPoincare

2005-01-20 21:06  gfourestey

	* life/lifesolver/quasiNewton.cpp:

	bug fix. convergence slowly improving

2005-01-20 18:21  gfourestey

	* life/lifesolver/steklovPoincareBase.cpp:

	reduced fluid bug fix. the FS interface is now going nowhere at a
	slower pace

2005-01-20 16:27  gfourestey

	* life/lifesolver/: FSISolver.cpp, VenantKirchhofSolver.hpp,
	exactJacobianBase.cpp, operFS.cpp:

	bug fix and comsmetic change. reduced fluid now works for
	exactJacobian framework but is still broken for steklovPoincare

2005-01-20 15:18  gfourestey

	* life/lifesolver/: quasiNewton.cpp, quasiNewton.hpp:

	minusdp member is set for exactJacobian framework

2005-01-20 15:16  gfourestey

	* life/lifesolver/: operFS.cpp, operFS.hpp, fixedPointBase.cpp,
	fixedPointBase.hpp:

	cleaning up deprecated constructors

2005-01-20 15:15  gfourestey

	* life/lifesolver/: exactJacobianBase.cpp, exactJacobianBase.hpp:

	tentative implementation of the reduced fluid algorithm in
	exactJacobian framework

2005-01-20 15:14  gfourestey

	* life/lifesolver/FSISolver.cpp:

	data file is now read before setting up the BC

2005-01-19 16:22  gfourestey

	* life/lifefem/: bcVector.cpp, bcVector.hpp:

	added const reference of the input vector

2005-01-19 16:11  gfourestey

	* life/lifesolver/: steklovPoincareBase.cpp,
	steklovPoincareBase.hpp, operFS.cpp, operFS.hpp:

	getters needed by quasiNewton implementation (still buggy though)

2005-01-19 16:10  gfourestey

	* life/lifesolver/NavierStokesHandler.hpp:

	getters needed by quasiNewton implementation

2005-01-19 16:07  gfourestey

	* life/lifesolver/: quasiNewton.cpp, quasiNewton.hpp, Makefile.am:

	JF Gerbeau's and M. Vidrascu's reduced fluid implementation based
	on M. Fernandez's test_fsi_qnewton code

2005-01-13 15:36  gfourestey

	* life/lifesolver/: steklovPoincareBase.cpp,
	steklovPoincareBase.hpp:

	cleaning up a bit ...

2005-01-13 15:35  gfourestey

	* life/lifesolver/VenantKirchhofSolver.hpp:

	residual computation bug fixed

2005-01-12 15:59  gfourestey

	* testsuite/test_fsi/data:

	mesh path is now set to the lifev mesh directory

2005-01-12 15:54  gfourestey

	* testsuite/test_fsi/data:

	new data with included DD-Newton precond definition

2005-01-12 15:53  gfourestey

	* life/lifesolver/: operFS.hpp, steklovPoincareBase.cpp,
	steklovPoincareBase.hpp:

	proper implementation of the preconditioned DD-Newton method along
	with some clean up

2005-01-12 15:51  gfourestey

	* life/lifesolver/VenantKirchhofSolver.hpp:

	modified residual but unsatisfactory modification so that DD-Newton
	works properly

2005-01-12 15:49  gfourestey

	* life/lifesolver/FSISolver.cpp:

	ye olde copy and paste bug. No incidence though since sourceTerm is
	always zero (at least has far as i know)

2005-01-12 13:44  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	reuse preconditioner

2005-01-12 13:43  winkelma

	* testsuite/test_ns_ipstab/: data, main.cpp:

	* define spacial order in data file * define boundary condition
	flags in data file

2005-01-10 16:24  gfourestey

	* testsuite/test_fsi/main.cpp:

	added restart possibility in data file

2005-01-10 16:20  gfourestey

	* life/lifesolver/: FSISolver.cpp, FSISolver.hpp,
	NavierStokesAleSolverPC.hpp, VenantKirchhofSolver.hpp,
	exactJacobianBase.cpp, fixedPointBase.cpp, steklovPoincareBase.cpp,
	steklovPoincareBase.hpp:

	Major update in F/S: a new method is added to the
	Domain-Decomposition framework.  Now, you can use DD-Newton
	approach by setting precond = 3. Along with a preconditioner, this
	method is virtually as fast as Miguel's Newton and is fit for
	parallel computation.  More information will be available when i
	post a full presentation on the lifev website (should be soon).

2005-01-10 16:08  gfourestey

	* life/lifesolver/NavierStokesHandler.hpp:

	tentative restart strategy (not working yet though)

2005-01-10 16:00  gfourestey

	* life/lifesolver/ElasticStructureHandler.hpp:

	tentative restart strategy (not working yet though)

2005-01-10 15:41  prudhomm

	* life/lifefem/: elemOper.cpp, elemOper.hpp:

	pass ScalUnknown<Vector> by reference and not by value a few
	indenting fixes

2005-01-09 14:29  prudhomm

	* testsuite/testsuite.at:

	disable test_fsi as it runs endlessly since beginning of last week

	Gilles, could you check your last commit and see what went wrong ?

2005-01-04 17:32  gfourestey

	* life/lifesolver/: operFS.hpp, steklovPoincareBase.cpp,
	steklovPoincareBase.hpp:

	added Domain Decomposition Newton strategy

2004-12-23 15:00  winkelma

	* testsuite/test_ns_ipstab/main.cpp:

	corrected inconsistent state: exact solution of unsteady problem
	was used for steady problem

2004-12-23 09:06  winkelma

	* testsuite/Makefile.am:

	added lifefem dir

2004-12-22 16:03  winkelma

	* life/lifealg/SolverAztec.cpp:

	* do not try to reuse a preconditioner which wasn't stored,
	avoiding abort * make sure it is stored if the user once asked for
	it in vain

2004-12-21 10:11  fernandez

	* life/lifesolver/VenantKirchhofSolver.hpp:

	The linear solver uses now the interface by C. Winkelman, in some
	cases (e.g. Newton, qNewton) the preconditionner don't need to be
	recomputed, so I would like keep_info = 1 and SAME_PRECONDITIONNER
	as argument for the solve command... not for the moment

2004-12-21 09:57  fernandez

	* testsuite/test_fsi_qnewton/data:

	for compatibility reasons keep_info = 0, I guess SteklovPoincare
	modifies the solid fe matrix

2004-12-21 09:46  fernandez

	* testsuite/test_fsi_qnewton/: Makefile.am, data, main.cpp,
	operFS.cpp, operFS.hpp, ud_functions.hpp:

	fsi test implementing the quasi-Newton algorithm by
	Gerbeau-Vidrascu M2AN 2003

2004-12-21 09:22  fernandez

	* life/lifefem/bcHandler.hpp:

	Sorry, still another bug:  if (type = 0) --> if (type == 0),

2004-12-21 09:17  fernandez

	* life/lifefem/bcHandler.hpp:

	Fixed bug: if (  type = 1 )   ->   if (type == 1)

2004-12-21 07:01  winkelma

	* testsuite/: Makefile.am, testsuite.at:

	run test_bchandler upon 'make check' in testsuite

2004-12-20 17:11  fernandez

	* life/lifefem/dofInterface3Dto3D.hpp:

	little changes in the interpolate method, now more usefull

2004-12-20 17:10  fernandez

	* life/lifefem/: bcHandler.hpp, bcManage.hpp, bcVector.cpp,
	bcVector.hpp:

	BCVectors of type = 2 can be now used

2004-12-20 15:23  winkelma

	* testsuite/test_ns_ipstab/data:

	use problem data consistent with other settings ...

2004-12-17 17:44  winkelma

	* life/lifealg/: SolverAztec.cpp, SolverAztec.hpp:

	* added optional argument to solve giving information about
	recalculation	of preconditioner, syntax similar to SolverPetsc *
	improved documentation slightly

2004-12-17 17:06  winkelma

	* admin/ac_check_parmetis.m4:

	add found library path to command line (for the case it is not a
	standard one)

2004-12-17 12:39  fernandez

	* testsuite/test_nsale/: NavierStokesAleSolverPC.new.hpp, main.cpp:

	Remove old file with pvm code

2004-12-17 10:38  fernandez

	* testsuite/test_nsale/: Makefile.am,
	NavierStokesAleSolverPC.new.hpp, data, imp3dt2.mesh, main.cpp,
	pvm3.h, ud_functions.hpp:

	Preliminar test running NS with ALE to be coupled with a non-linear
	shell solver (work done at CEMRACS 2004, now compiling within the
	present version of LifeV)

2004-12-17 10:32  vmartin

	* life/lifesolver/parabolicSolver.hpp:

	removed the cvs identifier

2004-12-17 10:08  vmartin

	* life/lifesolver/parabolicSolver.hpp:

	set in order the artistic indentation

2004-12-17 08:22  winkelma

	* admin/: ac_check_aztec.m4, ac_check_boost.m4, ac_check_mpi.m4,
	ac_check_parmetis.m4, ac_check_petsc.m4, ac_check_umfpack.m4,
	lifev_default_paths.m4:

	* moved library and include paths to lifev_default_paths.m4 (except
	petsc) * use variables lifev_default_{lib,include}dirs for general
	directories * added those variables instead of its values to the
	respective specific   variables ac_<package>_{lib,include}dirs *
	added default dirs for EPFL CMCS cluster malc1

2004-12-17 06:43  prudhomm

	* admin/ac_check_boost.m4:

	not all library variant are avaible so if libboost_regex-gcc.a is
	not present, try another one like libboost_regex.a

2004-12-16 10:10  fernandez

	* life/lifealg/SolverAztec.hpp:

	A simple setter for the level of recursion in the resolution of
	linear system

2004-12-16 10:09  prudhomm

	* admin/ac_check_boost.m4:

	in the case --with-boost-version is used in the command line

	forgot the prefix 'boost'

2004-12-16 10:05  prudhomm

	* admin/ac_check_boost.m4:

	in the case --with-boost-version is used in the command line

	check if there is a subdir/boost_version_  in ac_boost_includedir
	if yes update ac_boost_includedir

2004-12-16 09:55  prudhomm

	* admin/ac_check_boost.m4:

	fix fgor cmcs boost installation now it all works perfectly

	it is just as simple as

	make -f Makefile.cvs configure make

2004-12-16 09:55  prudhomm

	* .cvsignore:

	ignore

2004-12-16 09:35  prudhomm

	* admin/lifev_check_compilers.m4:

	added --enable-opt1 added --enable-opt2 added --enable-opt3

	--enable-opt is a equivalent to --enable-opt2

2004-12-16 09:35  prudhomm

	* admin/ac_check_boost.m4:

	try to be smarter with checking the boost version now it tries to
	detect the version number from the boostincludedir or by the
	presence of a subdir in boost_includedir with the version number

	the fallback is 1.31

	please test with your installation

2004-12-16 08:51  winkelma

	* testsuite/lifefem/test_hasOnlyEssential.cpp:

	added missing copyright header

2004-12-16 08:41  prudhomm

	* admin/ac_check_boost.m4:

	back to 1.31

2004-12-16 08:29  winkelma

	* testsuite/lifefem/: Makefile.am, test_hasOnlyEssential.cpp,
	testsuite.at:

	test for method BCHandler::hasOnlyEssential()

2004-12-16 08:18  prudhomm

	* admin/ac_check_umfpack.m4:

	more default path (ie /usr/local32) addd --with-umfpack-include and
	--with-umfpack-lib

2004-12-16 08:17  prudhomm

	* admin/ac_check_petsc.m4:

	more default path (ie /usr/local32)

2004-12-16 08:16  prudhomm

	* admin/ac_check_mpi.m4:

	added default patch for mpi search (ie /usr/local32) added
	--with-mpi-include and --with-mpi-lib to provide respectively the
	directory for include files and library files

2004-12-16 08:15  prudhomm

	* admin/ac_check_lapack.m4:

	added support for ACML and MKL math libraries fallback to standard
	blas/lapack if not found

2004-12-16 08:14  prudhomm

	* admin/ac_check_boost.m4:

	more default path (ie /usr/local32/boost) and check for standard
	boost header  any.hpp

2004-12-16 08:13  prudhomm

	* admin/ac_check_aztec.m4:

	more default path (ie /usr/local32/aztec)

2004-12-16 08:12  winkelma

	* life/lifefem/: bcHandler.cpp, bcHandler.hpp:

	* check for only essential boundary conditions correctly * added
	local class EssentialStatus and method listHasOnlyEssential() that
	for

2004-12-16 07:21  prudhomm

	* admin/: config.guess, config.sub:

	update those scripts

2004-12-16 07:20  prudhomm

	* admin/lifev_default_paths.m4:

	added lifev default path in the future we will put all paths in
	there right now it is not very impressive

2004-12-16 07:19  prudhomm

	* .cvsignore, testsuite/lifesolver/.cvsignore:

	ignore

2004-12-16 07:18  prudhomm

	* configure.in.in, admin/cvs.sh:

	added @CVSDATE@ to cvs-version of lifev

2004-12-16 07:18  prudhomm

	* NEWS:

	update

2004-12-14 16:55  winkelma

	* life/lifefem/bcCond.cpp:

	tell where you are when printing an error message

2004-12-14 15:29  winkelma

	* testsuite/test_ns_ipstab/data:

	read problem parameters from data file

2004-12-14 15:25  winkelma

	* testsuite/test_ns_ipstab/main.cpp:

	* define boundary conditions before solver * catch roundoff errors
	in timestepping loop * save exact solution and error in gmv files

2004-12-14 15:12  winkelma

	* life/lifesolver/: timeSolver.cpp, timeSolver.hpp:

	reflect changes in SolverAztec.{c,h}pp

2004-12-14 15:11  winkelma

	* life/lifealg/: SolverAztec.cpp, SolverAztec.hpp:

	do not suppose existence of file called "data"

2004-12-13 11:21  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	check mesh for elements with all nodes on the boundary

2004-12-10 15:25  vergara

	* life/lifefem/elemOper.cpp:

	 here it is implemented the curl-curl version in stiff_curl

2004-12-10 15:13  vergara

	* life/lifesolver/NavierStokesSolverPC.hpp:

	little modifications for the curl-curl formulation

2004-12-10 15:12  vergara

	* testsuite/test_ns_bcvec/main.cpp:

	There is the possibility to use the curl-curl formulation for the
	laplace operator beside the classical grad-grad one. This is
	usefull for the NS problem, since the natural conditions related to
	this formulation is the pressure instead the stress. For more
	details see C. Begue, C. Conca, F. Murat, O. Pironneau, Les
	\'equations de Stokes et de Navier-Stokes avec des conditions aux
	limites sur la pression.  In Brezis H. and Lions J. (eds) - {\it
	Nonlinear Partial Differential Equations and their applications},
	College de France Seminar, Vol IX, 179 (1988) and A. Veneziani and
	C. Vergara, Flow rate defective boundary conditions in
	haemodinamics simulations, {\it Int. Journ. Num. Meth. Fluids}
	(2004).  I commit it as an example in the test_ns_bcvec. You have
	to use NavierStokesSolverPC< RegionMesh3D<LinearTetra> >
	ns(data_file, feTetraP1bubble, feTetraP1,quadRuleTetra64pt,   //
				     quadRuleTria3pt, quadRuleTetra5pt,
	quadRuleTria3pt, BCh_u ); or NavierStokesSolverPC<
	RegionMesh3D<LinearTetra> > ns(data_file, feTetraP1bubble,
	feTetraP1,quadRuleTetra64pt,   //
	   quadRuleTria3pt, quadRuleTetra5pt, quadRuleTria3pt, BCh_u, 0 );
	for the grad-grad version. You have to put NavierStokesSolverPC<
	RegionMesh3D<LinearTetra> > ns(data_file, feTetraP1bubble,
	feTetraP1,quadRuleTetra64pt,   //
	quadRuleTria3pt, quadRuleTetra5pt, quadRuleTria3pt, BCh_u, 1); for
	the curl-curl version.

2004-12-10 12:05  winkelma

	* life/lifefem/bcHandler.hpp:

	issue warning once only

2004-12-07 19:28  mm0

	* Makefile.am, NEWS, admin/lifev_check_compilers.m4,
	life/lifealg/SolverAztec.cpp, life/lifealg/SolverAztec.hpp,
	life/lifearray/MSRMatrix.hpp, life/lifefem/assemb.hpp,
	life/lifefem/bcCond.cpp, life/lifefem/bcCond.hpp,
	life/lifefem/bcFunction.cpp, life/lifefem/bcFunction.hpp,
	life/lifefem/bcHandler.cpp, life/lifefem/bcHandler.hpp,
	life/lifefem/bcManage.hpp, life/lifefem/dof.cpp,
	life/lifefem/elemOper.cpp, life/lifefem/elemOper.hpp,
	life/lifefilters/readMesh3D.hpp, life/lifesolver/Makefile.am,
	life/lifesolver/parabolicSolver.hpp,
	life/lifesolver/timeSolver.cpp, life/lifesolver/timeSolver.hpp,
	testsuite/Makefile.am, testsuite/testsuite.at,
	testsuite/lifesolver/Makefile.am, testsuite/lifesolver/data,
	testsuite/lifesolver/main.cpp, testsuite/lifesolver/testsuite.at,
	testsuite/lifesolver/ud_functions.hpp:

	 Modified Files:
		Makefile.am NEWS admin/lifev_check_compilers.m4
		life/lifealg/SolverAztec.cpp life/lifealg/SolverAztec.hpp
		life/lifearray/MSRMatrix.hpp life/lifefem/assemb.hpp
		life/lifefem/bcCond.cpp life/lifefem/bcCond.hpp
		life/lifefem/bcFunction.cpp life/lifefem/bcFunction.hpp
		life/lifefem/bcHandler.cpp life/lifefem/bcHandler.hpp
		life/lifefem/bcManage.hpp life/lifefem/dof.cpp
		life/lifefem/elemOper.cpp life/lifefem/elemOper.hpp
		life/lifefilters/readMesh3D.hpp life/lifesolver/Makefile.am
		testsuite/Makefile.am testsuite/testsuite.at
	 Added Files:
		life/lifesolver/parabolicSolver.hpp
		life/lifesolver/timeSolver.cpp
	life/lifesolver/timeSolver.hpp
		testsuite/lifesolver/Makefile.am testsuite/lifesolver/data
		testsuite/lifesolver/main.cpp
		testsuite/lifesolver/testsuite.at
		testsuite/lifesolver/ud_functions.hpp

	----------------------------------------------------------------------

	I've added some classes for non constant coefficient in equations
	and coefficients/bc depending on solution, solved with iteration
	*UDep,TimeSolver,ParabolicSolver,testsuite/lifesolver

2004-12-07 14:28  prudhomm

	* admin/ac_check_itk.m4:

	check for itk presence

2004-12-03 15:03  winkelma

	* admin/: ac_check_parmetis.m4, ac_check_petsc.m4:

	use MPILIBS instead of mpi_libs, because ac_check_mpi.m4 defines it
	like this

2004-12-03 07:08  prudhomm

	* doc/manual/Makefile.am:

	dont fail

2004-11-30 07:39  prudhomm

	* NEWS:

	update

2004-11-26 15:49  winkelma

	* testsuite/test_naturalbc/: data, main.cpp:

	test natural BCs

	Too true and too sad to be a joke: this test only tested essential
	BCs...

2004-11-26 09:25  winkelma

	* testsuite/test_masstransport/: main.cpp, ud_functions.hpp:

	* add explicit homogeneous neumann condition for concentration the
	right way * move fZero to ud_functions.hpp

2004-11-25 15:34  winkelma

	* life/lifefem/: bcHandler.cpp, bcHandler.hpp:

	* in bdUpdate: print warning if not all boundary dofs are covered
	by BCHandler * some cosmetics

2004-11-25 15:02  winkelma

	* testsuite/test_ns_cyl/: main.cpp, ud_functions.hpp:

	* made implcit homogeneous Neumann boundary condition explicit *
	adapted BC hint, actually fixing a bug

2004-11-25 14:53  winkelma

	* testsuite/test_masstransport/main.cpp:

	* made implicit homogeneous Neumann boundary conditions explicit *
	adjusted BC hint accordingly, actually fixing a bug -> the state
	should now be consistent

2004-11-25 10:12  winkelma

	* testsuite/test_ns_cyl_flux/main_ns_twofluxes.cpp:

	NavierStokesSolverPCnotincr.hpp does not exist any more

2004-11-24 18:00  winkelma

	* life/lifesolver/: exactJacobianBase.cpp, exactJacobianBase.hpp:

	bug fix

2004-11-24 16:34  gfourestey

	* testsuite/data/mesh/inria/Makefile.am:

	added mesh files for auto-test

2004-11-24 14:45  prudhomm

	* testsuite/testsuite.at:

	 added test_fsi in automatic testsuite

2004-11-24 14:35  gfourestey

	* testsuite/test_fsi/testsuite.at:

	proper file to run the nightly test

2004-11-24 14:33  gfourestey

	* testsuite/test_fsi/main.cpp:

	check procedure now calls the exactJacobian, fixedPoint and the
	method in data and checks the displacement at the FS interface

2004-11-24 14:30  gfourestey

	* life/lifesolver/: operFS.cpp, operFS.hpp:

	displacementOnInterface now returns the displacement on the FS
	interface

2004-11-24 14:29  gfourestey

	* testsuite/data/mesh/inria/: tube20.mesh, vessel20.mesh:

	added mesh for testsuite auto check

2004-11-24 11:55  prudhomm

	* life/lifefem/sobolevNorms.hpp:

	fix compilation

2004-11-24 11:26  prudhomm

	* admin/lifev_check_compilers.m4:

	lifesolver is definitely not 3.4 compliant :(

2004-11-24 11:15  prudhomm

	* NEWS:

	update

2004-11-24 11:10  prudhomm

	* life/lifefem/sobolevNorms.hpp:

	non template function must be defined inline if you have the
	implementation in the header otherwise you will et multiple symbol
	definition

2004-11-24 10:04  prudhomm

	* life/lifesolver/FSISolver.cpp, life/lifesolver/Makefile.am,
	life/lifesolver/exactJacobianBase.cpp,
	life/lifesolver/fixedPointBase.cpp,
	life/lifesolver/steklovPoincareBase.cpp,
	testsuite/test_mass_coupling/main.cpp:

	use new BCVectorInterface, pass objects by copy

2004-11-24 10:04  prudhomm

	* life/lifefem/: bcVector.cpp, bcVector.hpp:

	fix for BCVectorInterface and pass shareD_ptr<> by value to avoid
	the ugly copies in client code

2004-11-24 10:03  prudhomm

	* life/lifefem/: assemb.cpp, assemb.hpp:

	patch by DADP for missing routine compute_vec_DG_BF

2004-11-23 17:15  gfourestey

	* life/lifesolver/: exactJacobianBase.cpp, fixedPointBase.cpp,
	fixedPointBase.hpp, operFS.cpp, operFS.hpp,
	steklovPoincareBase.cpp:

	fixed the bug. Fixed point algorithm is now working properly

2004-11-22 10:53  gfourestey

	* life/lifesolver/: ElasticStructureHandler.hpp,
	NavierStokesHandler.hpp, operFS.cpp, operFS.hpp,
	steklovPoincareBase.cpp, steklovPoincareBase.hpp:

	bug fix

2004-11-22 09:44  gfourestey

	* life/lifesolver/fixedPointBase.hpp:

	i forgot the header

2004-11-21 22:46  prudhomm

	* admin/Makefile.am:

	added

2004-11-21 22:32  gfourestey

	* life/lifesolver/fixedPointBase.cpp:

	bug fixed. Aitken constructor was not called properly. Fixed point
	still broken however

2004-11-21 22:19  prudhomm

	* configure.in.in:

	use LIFEV_CHECK_COMPILERS

2004-11-21 22:18  prudhomm

	* life/lifesolver/darcyHandler.hpp:

	verbose -> this->verbose there are tons of other stuff like like
	but I don't have the courage to change that not tonight anyway

2004-11-21 22:17  prudhomm

	* life/lifefem/assemb.hpp:

	#warning about non-existent code call and actually disable the call

2004-11-21 22:17  prudhomm

	* life/lifefilters/mesh_util.hpp:

	don't call delete on a boost::shared_ptr<>

2004-11-21 22:16  prudhomm

	* life/lifefem/currentFEDG.cpp:


	Trace is now ealier defined and put  in an unnamed namespace

2004-11-21 22:16  prudhomm

	* life/lifearray/: CSRMatrix.hpp, MSRMatrix.hpp, sparseArray.cpp,
	sparseArray.hpp:

	nihil -> zero and put it in an unnamed namespace

2004-11-21 22:15  prudhomm

	* admin/lifev_check_compilers.m4:

	Lifev compiler checks

2004-11-21 19:19  prudhomm

	* admin/: mdate-sh, texinfo.tex:

	added mdate-sh and texinfo.tex for lifev-imaging

2004-11-21 18:25  gfourestey

	* life/lifesolver/steklovPoincareBase.cpp:

	fixed small bug, steklov-poincare gives the same results as before
	CP's modifications

2004-11-19 16:33  gfourestey

	* life/lifesolver/: fixedPointBase.cpp, fixedPointBase.hpp:

	added generalized aitken in fixed point. However, the fixed point
	is still broken

2004-11-19 15:36  gfourestey

	* life/lifesolver/steklovPoincareBase.cpp:

	removed no longer needed commentary

2004-11-19 15:35  gfourestey

	* testsuite/test_fsi/main.cpp:

	enabling check with --check or -c options

2004-11-19 13:45  prudhomm

	* testsuite/test_fsi/main.cpp:

	proper conversion

2004-11-19 13:36  prudhomm

	* testsuite/test_fsi/main.cpp:

	constructor to build oper and precond from data_file

2004-11-19 13:26  prudhomm

	* life/lifesolver/: operFS.hpp, steklovPoincareBase.cpp:

	default values are good

2004-11-19 10:53  prudhomm

	* testsuite/test_fsi/main.cpp, life/lifesolver/FSISolver.cpp,
	life/lifesolver/steklovPoincareBase.cpp,
	life/lifesolver/steklovPoincareBase.hpp:

	better and better and better throw an exceptio if an invalid
	preconditioner is used with steklovPoincare more verbose with area
	debugging added a setDataFromGetPot in steklovPoincare to setup
	aitken data and preconditioner

2004-11-19 09:35  prudhomm

	* life/lifesolver/FSISolver.cpp:

	CVS_SILENT

	minor

2004-11-19 09:32  prudhomm

	* life/lifesolver/VenantKirchhofSolver.hpp:

	be a good boy and tell to papa more precisely what went wrong and
	don't do exit(1) that is very bad manner to quit just because
	something went wrong, instead throw an exception

2004-11-19 09:23  prudhomm

	* testsuite/test_fsi/main.cpp:

	check fixedPoint and steklovPoincare

2004-11-19 09:23  prudhomm

	* life/lifesolver/FSISolver.cpp:

	cleanup and area debugging stuff to look at what is going on

2004-11-19 09:10  prudhomm

	* testsuite/test_fsi/main.cpp:

	allow multiple FSI solvers: that's a first for LifeV now check that
	the FSI solvers give the same results

2004-11-19 09:08  prudhomm

	* life/lifesolver/: FSISolver.cpp, FSISolver.hpp,
	exactJacobianBase.cpp, exactJacobianBase.hpp, fixedPointBase.cpp,
	fixedPointBase.hpp, operFS.cpp, operFS.hpp,
	steklovPoincareBase.cpp, steklovPoincareBase.hpp:

	Stopped the madness with Boundary conditions Now ressources are
	properly allocated, used and destroyed Alas the code is still
	fragile but way better

	Fixed bug in steklovPoincare with the BC number 0 was picked to
	compute quantities on the interface. Basically the order to enter
	the BC was important now it is not a problem anymore

	huge cleanup to avoid duplicating code. steklovPoincare and operFS
	are now smaller !

2004-11-19 09:06  prudhomm

	* life/debug.areas:

	new debugging areas for FSI1

2004-11-19 07:14  prudhomm

	* testsuite/test_coupling_3d0d/main_FSI0d.cpp:

	disable code for now AM is porting her code to new FSISolver

2004-11-19 07:00  prudhomm

	* testsuite/test_mass_coupling/main.cpp:

	port to new BCVectorInterface prototype for dof interface

2004-11-18 20:12  prudhomm

	* life/lifefem/bcHandler.cpp:

	throw invalid_argument if bcname was not found in the list of BCs

2004-11-18 20:12  prudhomm

	* life/lifearray/vecUnknown.hpp:

	got resize ?

2004-11-18 15:10  winkelma

	* life/lifealg/SolverAztec.cpp:

	make hack less ugly :-/

2004-11-18 14:55  winkelma

	* life/lifealg/SolverAztec.cpp:

	make hack less ugly :-/

2004-11-18 14:20  prudhomm

	* life/lifesolver/operFS.hpp:

	Ok use references here that's bad

2004-11-18 13:59  prudhomm

	* testsuite/test_fsi/main.cpp:

	Wow so cool that it hurts my eyes ;)

2004-11-18 13:56  prudhomm

	* life/lifesolver/: FSISolver.cpp, exactJacobianBase.cpp,
	fixedPointBase.cpp, operFS.cpp, operFS.hpp,
	steklovPoincareBase.cpp:

	sanitized the Dofinterface3dto3d madness use shared-ptr instead now
	ressources are allocated and destroyed at the proper time

	now the code is way more rebust and less error prone

2004-11-18 13:55  prudhomm

	* life/lifearray/vecUnknown.hpp:

	default constructor for PhysVectUnknown

2004-11-18 13:54  prudhomm

	* life/lifefem/: dofInterfaceHandler.cpp, dofInterfaceHandler.hpp:

	used shared_ptr to handle ressources

2004-11-18 13:54  prudhomm

	* life/lifefem/: dofInterface3Dto3D.cpp, dofInterfaceBase.hpp:

	minor changes

2004-11-18 13:53  prudhomm

	* life/lifefem/: bcVector.cpp, bcVector.hpp:

	sanitized BCVectorInterface now it takes a
	shared_ptr<DofInterfaceBase>

2004-11-18 13:52  prudhomm

	* life/lifealg/nonLinRichardson.hpp:

	Vector is used by LifeV Vector --> VectorType

2004-11-18 13:52  prudhomm

	* life/lifealg/generalizedAitken.hpp:

	allow delayed initialization using setup() and default constructor

2004-11-18 10:54  prudhomm

	* testsuite/test_fsi/main.cpp:

	now it so much simpler and powerful

2004-11-18 10:54  prudhomm

	* testsuite/test_fsi/data:

	now method must be a string

2004-11-18 10:49  prudhomm

	* life/lifesolver/: FSISolver.cpp, FSISolver.hpp, Makefile.am:

	Hail Hail to the new FSI solver which behaves much like any other
	solver !

	This is FSI made easy

	It can/must be much improved but let's see that after 0.5

2004-11-18 10:47  prudhomm

	* life/lifesolver/: exactJacobianBase.cpp, exactJacobianBase.hpp,
	fixedPointBase.cpp, fixedPointBase.hpp, operFS.cpp, operFS.hpp,
	steklovPoincareBase.cpp, steklovPoincareBase.hpp:

	many things:

	* added FSIFactory so that we have to manipulate only the base
	class operFS and never the sublasses see test_fsi and the FSISolver
	class

	* allow delayed complete initialization, because the factory will
	call the default constructor

2004-11-18 10:45  prudhomm

	* life/lifesolver/VenantKirchhofSolver.hpp:

	added possibility to set the source term and store it

2004-11-18 10:44  prudhomm

	* life/lifefem/: dofInterface3Dto3D.cpp, dofInterface3Dto3D.hpp:

	Two things:

	 * Fixed a very nasty bug if we use a different FE space for the
	   second domain than the one used by the first domain

	 * Modified the class so that we can delay the real initialization

2004-11-17 18:37  moura

	* testsuite/test_coupling_3d0d/Makefile.am:

	Removed operFS class

2004-11-17 18:37  moura

	* testsuite/test_coupling_3d0d/operFS.hpp:

	No need for ir anymore since usenow operFS class in lifesolver

2004-11-17 18:36  moura

	* testsuite/test_coupling_3d0d/operFS.cpp:

	No need for ir anymore, since use the operFS class in lifesolver

2004-11-17 18:30  moura

	* testsuite/test_coupling_3d0d/main_FSI0d.cpp:

	Uses now Gilles interface classes for FSI. There is not yet an
	interface class for FSI-0d coupling due to some technical
	problems... Think it will be for release 0.6!

2004-11-17 18:28  moura

	* testsuite/test_coupling_3d0d/: C3d0d.hpp, flowRate.hpp,
	main_NS0d.cpp, meanPressure.hpp, zeroDModelSolver.hpp:

	The interface class recieves now the two solvers that is supose to
	couple!

2004-11-17 11:11  prudhomm

	* Makefile.am, admin/Makefile.am, testsuite/testsuite.at:

	YEAH after much microscopic work make distchekc runs properly from
	beginning to end

	lifev 0.5 is almost ready for release :)

	Gilles should add test_fsi to testsuite very soon

2004-11-17 09:42  winkelma

	* testsuite/test_fhn/fhnHandler.cpp:

	BCHandler::setNumber has been deleted and is not necessary

2004-11-17 09:31  prudhomm

	* testsuite/test_coupling_3d0d/Makefile.am:

	C3d0d.hpp -> include_HEADERS

2004-11-17 08:22  prudhomm

	* testsuite/test_ns_ipstab/Makefile.am:

	ipStabilization.hpp -> include_HEADERS

2004-11-17 08:06  prudhomm

	* testsuite/: Makefile.am, testsuite.at, test_fsi_dd/.cvsignore,
	test_fsi_dd/Makefile.am, test_fsi_dd/data, test_fsi_dd/main.cpp,
	test_fsi_dd/operFS.cpp, test_fsi_dd/operFS.hpp,
	test_fsi_dd/testsuite.at, test_fsi_dd/ud_functions.hpp,
	test_fsi_picard/.cvsignore, test_fsi_picard/Makefile.am,
	test_fsi_picard/data, test_fsi_picard/main.cpp,
	test_fsi_picard/operFS.hpp, test_fsi_picard/testsuite.at,
	test_fsi_picard/ud_functions.hpp:

	removed test_fsi_picard and test_fsi_dd. test_fsi_newton compiles
	but will also disappear soon

2004-11-17 08:05  prudhomm

	* testsuite/test_fsi/: data, testsuite.at:

	typo

2004-11-17 08:04  prudhomm

	* testsuite/test_fsi/testsuite.at:

	update testsuite.at

2004-11-16 16:49  prudhomm

	* life/lifesolver/Makefile.am:

	NavierStokesWithFlux.hpp is in include_HEADERS

2004-11-16 16:37  prudhomm

	* life/lifefem/dofByFace.hpp, testsuite/Makefile.am,
	testsuite/test_dg/main.cpp:

	added test_dg to Makefile make test_dg compile

2004-11-16 16:34  prudhomm

	* NEWS, doc/tex/lifev.bib, life/lifealg/Makefile.am,
	life/lifealg/SolverPETSC.cpp, life/lifealg/SolverPETSC.hpp,
	life/lifealg/SolverUMFPACK.cpp, life/lifealg/SolverUMFPACK.hpp,
	life/lifealg/generalizedAitken.hpp, life/lifealg/newton.hpp,
	life/lifealg/nonLinRichardson.hpp, life/lifearray/Makefile.am,
	life/lifearray/vecUnknown.hpp, life/lifecore/Makefile.am,
	life/lifecore/bareItems.cpp, life/lifecore/bareItems.hpp,
	life/lifecore/basisElSh.cpp, life/lifecore/basisElSh.hpp,
	life/lifecore/dataTime.cpp, life/lifecore/dataTime.hpp,
	life/lifecore/dataTransient.cpp, life/lifecore/dataTransient.hpp,
	life/lifecore/lifeV.hpp, life/lifecore/lifecore.dox,
	life/lifecore/post_proc.hpp, life/lifecore/subDomainNeighbors.cpp,
	life/lifecore/subDomainNeighbors.hpp, life/lifefem/Makefile.am,
	life/lifefem/bcHandler.cpp, life/lifefem/bcHandler.hpp,
	life/lifefem/bcManage.hpp, life/lifefem/bdfNS.cpp,
	life/lifefem/currentFE.cpp, life/lifefem/dataTime.cpp,
	life/lifefem/dataTime.hpp, life/lifefem/dataTransient.cpp,
	life/lifefem/dataTransient.hpp, life/lifefem/defQuadRuleFE.cpp,
	life/lifefem/interpolate.hpp, life/lifefem/postProc.hpp,
	life/lifefem/refFE.hpp, life/lifefem/sobolevNorms.hpp,
	life/lifefilters/Makefile.am, life/lifefilters/importer.cpp,
	life/lifefilters/importer.hpp, life/lifefilters/mesh_util.hpp,
	life/lifefilters/postProc.hpp, life/lifefilters/readMesh3D.hpp,
	life/lifemesh/Makefile.am, life/lifemesh/bareItems.cpp,
	life/lifemesh/bareItems.hpp, life/lifemesh/basisElSh.cpp,
	life/lifemesh/basisElSh.hpp, life/lifemesh/geo0D.cpp,
	life/lifemesh/markers_base.cpp, life/lifemesh/markers_base.hpp,
	life/lifemesh/mesh_util_base.hpp,
	life/lifemesh/subDomainNeighbors.cpp,
	life/lifemesh/subDomainNeighbors.hpp,
	life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/NavierStokesSolverPC.hpp,
	life/lifesolver/NavierStokesSolverPCnotincr.hpp,
	life/lifesolver/NavierStokesWithFlux.hpp,
	life/lifesolver/NavierStokesWithFlux_new.hpp,
	life/lifesolver/NavierStokesWithTwoFluxes.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/convDiffReactHandler.hpp,
	life/lifesolver/convDiffReactSolverPC.hpp,
	life/lifesolver/exactJacobianBase.cpp,
	life/lifesolver/exactJacobianBase.hpp,
	life/lifesolver/fixedPointBase.cpp,
	life/lifesolver/fixedPointBase.hpp, life/lifesolver/operFS.cpp,
	life/lifesolver/operFS.hpp,
	life/lifesolver/steklovPoincareBase.cpp,
	life/lifesolver/steklovPoincareBase.hpp, testsuite/Makefile.am,
	testsuite/testsuite.at, testsuite/data/mesh/Makefile.am,
	testsuite/data/mesh/inria/Makefile.am,
	testsuite/data/mesh/inria/tube.mesh,
	testsuite/data/mesh/inria/vessel.mesh,
	testsuite/data/mesh/netgen/.cvsignore,
	testsuite/data/mesh/netgen/Makefile.am,
	testsuite/data/mesh/netgen/cube.geo,
	testsuite/data/mesh/netgen/cubeBc312_x16.vol,
	testsuite/data/mesh/netgen/cubeBc312_x4.vol,
	testsuite/lifealg/Makefile.am,
	testsuite/lifealg/test_linearsolvers.cpp,
	testsuite/lifealg/test_umfpack.cpp,
	testsuite/lifefilters/.cvsignore,
	testsuite/lifefilters/Makefile.am, testsuite/lifefilters/data,
	testsuite/lifefilters/main.cpp, testsuite/lifefilters/main.hpp,
	testsuite/lifefilters/solution4x.jpg,
	testsuite/lifefilters/testsuite.at,
	testsuite/lifefilters/ud_functions.hpp,
	testsuite/test_coupling_3d0d/C3d0d.hpp,
	testsuite/test_coupling_3d0d/Makefile.am,
	testsuite/test_coupling_3d0d/data,
	testsuite/test_coupling_3d0d/data_FSI0d,
	testsuite/test_coupling_3d0d/data_NS0d,
	testsuite/test_coupling_3d0d/main.cpp,
	testsuite/test_coupling_3d0d/main_FSI0d.cpp,
	testsuite/test_coupling_3d0d/main_NS0d.cpp,
	testsuite/test_coupling_3d0d/operFS.cpp,
	testsuite/test_coupling_3d0d/operFS.hpp,
	testsuite/test_coupling_3d0d/testsuite.at,
	testsuite/test_coupling_3d0d/ud_functions.hpp,
	testsuite/test_coupling_3d0d/zeroDModelSolver.hpp,
	testsuite/test_darcy/Makefile.am, testsuite/test_darcy/main.cpp,
	testsuite/test_fsi/main.cpp, testsuite/test_masstransport/main.cpp,
	testsuite/test_ns_cyl/main.cpp, life/lifesolver/nsip.hpp,
	testsuite/test_ns_cyl_flux/Makefile.am,
	testsuite/test_ns_cyl_flux/main_new.cpp,
	testsuite/test_ns_cyl_flux/testsuite.at,
	testsuite/test_ns_ipstab/Makefile.am,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/data,
	testsuite/test_ns_ipstab/ethierSteinman.cpp,
	testsuite/test_ns_ipstab/ethierSteinman.hpp,
	testsuite/test_ns_ipstab/main.cpp,
	testsuite/test_ns_ipstab/ud_functions.cpp,
	testsuite/test_ns_ipstab/ud_functions.hpp,
	testsuite/test_postproc/main.cpp:

	update lifev_1d branch with HEAD

2004-11-16 16:22  moura

	* testsuite/test_coupling_3d0d/C3d0d.hpp:

	test_coupling_3d0d should now compile!

2004-11-16 16:16  prudhomm

	* life/lifefem/Makefile.am:

	dofByFace.hpp in include_HEADERS dofByFace.cpp in lib

2004-11-16 16:14  prudhomm

	* life/lifecore/Makefile.am:

	factory.hpp in include_HEADERS

2004-11-16 16:08  vergara

	* testsuite/test_ns_cyl_flux/testsuite.at:

	 only test_new is checked when you do make_check

2004-11-16 16:07  vergara

	* testsuite/test_ns_cyl_flux/Makefile.am:

	now is compiled only test_new (related to main_new) because the
	other 3 tests (related to the other 3 main) don't work as
	NSWithFlux.hpp (old version) and NSWithTwoFluxes.hpp are deleted

2004-11-16 16:05  vergara

	* testsuite/test_ns_cyl_flux/main_new.cpp:

	modified main_new that works with NSWithFlux.hpp no more with
	NSWithFlux_new.hpp that was deleted

2004-11-16 15:22  gfourestey

	* life/lifesolver/exactJacobianBase.cpp,
	life/lifesolver/exactJacobianBase.hpp,
	life/lifesolver/fixedPointBase.cpp,
	life/lifesolver/fixedPointBase.hpp, life/lifesolver/operFS.cpp,
	life/lifesolver/operFS.hpp,
	life/lifesolver/steklovPoincareBase.cpp,
	life/lifesolver/steklovPoincareBase.hpp,
	testsuite/test_fsi/main.cpp:

	solid and fluid are now initialized from main.cpp

2004-11-16 13:39  gfourestey

	* life/lifesolver/: operFS.cpp, operFS.hpp,
	steklovPoincareBase.cpp:

	added member function to compute the displacement difference
	between the fluid and the structure at the interface

2004-11-16 13:13  prudhomm

	* life/lifesolver/convDiffReactHandler.hpp:

	standard headers first

	got karma ?

2004-11-16 10:56  prudhomm

	* NEWS:

	update

2004-11-16 10:53  prudhomm

	* life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/convDiffReactHandler.hpp,
	testsuite/test_postproc/main.cpp:

	update

2004-11-16 10:49  prudhomm

	* life/lifefem/: Makefile.am, postProc.hpp:

	moved to lifefem it seems that NSHandler uses it

2004-11-16 10:46  prudhomm

	* life/lifefilters/: Makefile.am, postProc.hpp:

	added postProc (formerly post_proc)

2004-11-16 10:44  prudhomm

	* life/lifecore/: Makefile.am, dataTime.cpp, dataTime.hpp,
	dataTransient.cpp, dataTransient.hpp, post_proc.hpp:

	moved dataTime and dataTransient to lifefem moved post_proc to
	lifefilters update Makefile.am

2004-11-16 10:38  prudhomm

	* life/lifefem/: dataTime.cpp, dataTime.hpp, dataTransient.cpp,
	dataTransient.hpp, Makefile.am:

	dataTime and dataTransient belong here actually they should be
	merged !!!!!!!!!!

2004-11-16 10:38  prudhomm

	* life/lifefem/bdfNS.cpp:

	added #include<algorithm> for std::max and proper casting for
	std::max

2004-11-16 10:24  prudhomm

	* life/lifefem/Makefile.am:

	added interpolate.hpp

2004-11-16 10:23  prudhomm

	* life/lifefem/interpolate.hpp:

	add #warning that it should not be used yet

2004-11-16 10:21  prudhomm

	* life/lifefem/interpolate.hpp:

	added dofwise interpolation not yet used but shall be in the next
	release

2004-11-16 10:18  prudhomm

	* testsuite/lifealg/Makefile.am:

	depend on lifemesh :( this is bad and should be fixed soon

2004-11-16 10:17  prudhomm

	* NEWS:

	update

2004-11-16 10:17  prudhomm

	* testsuite/: data/mesh/netgen/.cvsignore, lifefilters/.cvsignore:

	ignore Makefile.in

2004-11-16 10:09  prudhomm

	* life/: lifecore/Makefile.am, lifecore/subDomainNeighbors.cpp,
	lifecore/subDomainNeighbors.hpp, lifemesh/Makefile.am,
	lifemesh/subDomainNeighbors.cpp, lifemesh/subDomainNeighbors.hpp:

	moved to lifemesh. they belong there and not to lifecore

2004-11-16 09:57  prudhomm

	* life/lifecore/lifeV.hpp:

	should compile now

2004-11-16 09:53  prudhomm

	* life/lifecore/lifeV.hpp:

	#if 0  boost #endif

	it seems that i am using stuff fronm boost 1.32 and it does not
	work with 1.31 :(

2004-11-16 09:00  prudhomm

	* life/: lifealg/Makefile.am, lifearray/Makefile.am:

	yup that's bad lifealg and lifearray depend on lifemesh because of
	pattern.*

2004-11-16 08:59  prudhomm

	* life/lifecore/Makefile.am:

	begone basisElSh and bareItems

2004-11-16 08:58  prudhomm

	* life/: lifemesh/bareItems.cpp, lifemesh/bareItems.hpp,
	lifemesh/basisElSh.cpp, lifemesh/basisElSh.hpp,
	lifecore/bareItems.cpp, lifecore/bareItems.hpp,
	lifecore/basisElSh.cpp, lifecore/basisElSh.hpp:

	they belong to lifemesh

2004-11-16 08:43  prudhomm

	* life/lifecore/: basisElSh.hpp, basisElSh.cpp:

	use id_type instead of ID

2004-11-16 08:41  prudhomm

	* life/lifecore/lifeV.hpp:

	now compute automatically integer types with fixed byte size added
	some documentation

2004-11-16 08:40  prudhomm

	* life/lifecore/lifecore.dox:

	some doxygen documentation  for LifeV

2004-11-16 08:29  prudhomm

	* NEWS:

	update

2004-11-16 07:57  prudhomm

	* life/lifesolver/: NavierStokesWithFlux_new.hpp,
	NavierStokesWithTwoFluxes.hpp, NavierStokesWithFlux.hpp:

	moved NavierStokesWithFlux_new to NavierStokesWithFlux

	removed NavierStokesWithTwoFluxes

2004-11-15 21:07  prudhomm

	* life/lifefilters/: importer.cpp, importer.hpp:

	added netgen as a file format

2004-11-15 13:43  winkelma

	* life/lifesolver/: steklovPoincareBase.cpp,
	steklovPoincareBase.hpp:

	moved M_BCh_du and M_BCh_dz to the children who need it, providing
	the correct hints at construction time

2004-11-15 13:40  winkelma

	* life/lifesolver/: exactJacobianBase.cpp, exactJacobianBase.hpp,
	operFS.cpp, operFS.hpp:

	moved M_BCh_du and M_BCh_dz to the children who need it, providing
	the correct hints at construction time

2004-11-15 10:44  winkelma

	* testsuite/test_ns_ipstab/: ethierSteinman.cpp,
	ethierSteinman.hpp, ud_functions.cpp, ud_functions.hpp:

	corrected fNeumann

2004-11-15 08:54  winkelma

	* testsuite/: test_coupling_3d0d/main_FSI0d.cpp,
	test_ns_cyl/main.cpp, test_masstransport/main.cpp,
	test_ns_ipstab/main.cpp:

	changed flag for full essential BCs to hint enum

2004-11-15 08:53  winkelma

	* life/lifefem/: bcHandler.cpp, bcHandler.hpp:

	* changed flag for full essential BCs to hint enum * united all
	constructors * made protected data private * renamed member data
	from _foo to M_foo * adapted documentation * removed doxygen
	comments in bcHandler.cpp

2004-11-15 08:24  prudhomm

	* life/lifesolver/NavierStokesSolverPCnotincr.hpp:

	removed redundant code

2004-11-15 07:15  winkelma

	* testsuite/data/mesh/netgen/Makefile.am:

	new

2004-11-15 07:11  winkelma

	* testsuite/data/mesh/Makefile.am:

	added subdir for netgen meshes in Makefile.am

2004-11-14 20:10  gfourestey

	* life/: lifesolver/NavierStokesAleSolverPC.hpp,
	lifesolver/steklovPoincareBase.cpp,
	lifesolver/steklovPoincareBase.hpp, lifealg/generalizedAitken.hpp,
	lifealg/newton.hpp:

	Neumann-Neumann algorithm is up and running

2004-11-14 18:11  mm0

	* NEWS, life/lifecore/bareItems.hpp, life/lifecore/basisElSh.hpp,
	life/lifefem/currentFE.cpp, life/lifefem/defQuadRuleFE.cpp,
	life/lifefilters/mesh_util.hpp, life/lifefilters/readMesh3D.hpp,
	life/lifemesh/geo0D.cpp, life/lifemesh/markers_base.cpp,
	life/lifemesh/markers_base.hpp, life/lifemesh/mesh_util_base.hpp,
	life/lifesolver/convDiffReactSolverPC.hpp, testsuite/Makefile.am,
	testsuite/testsuite.at, testsuite/data/mesh/netgen/cube.geo,
	testsuite/data/mesh/netgen/cubeBc312_x16.vol,
	testsuite/data/mesh/netgen/cubeBc312_x4.vol,
	testsuite/lifefilters/Makefile.am, testsuite/lifefilters/data,
	testsuite/lifefilters/main.cpp, testsuite/lifefilters/main.hpp,
	testsuite/lifefilters/solution4x.jpg,
	testsuite/lifefilters/testsuite.at,
	testsuite/lifefilters/ud_functions.hpp:

	some little bug fixes and added in testsuite/lifefilters/ tests
	about netgen

2004-11-13 07:07  winkelma

	* life/lifealg/SolverPETSC.cpp:

	make setNullSpace compile for PETSc 2.2.0 (hopefully)

2004-11-12 18:37  winkelma

	* testsuite/test_ns_ipstab/Makefile.am:

	added ud_functions.cpp, ethierSteinman.hpp and ethierSteinman.cpp

2004-11-12 18:36  winkelma

	* testsuite/test_ns_ipstab/ud_functions.hpp:

	* grouped user defined functions into class EthierSteinmanSteady *
	split declaration and implementation into cpp and hpp file

2004-11-12 18:35  winkelma

	* testsuite/test_ns_ipstab/: ethierSteinman.cpp,
	ethierSteinman.hpp, ud_functions.cpp:

	new

2004-11-12 18:33  winkelma

	* testsuite/test_ns_ipstab/data:

	added options for linearized and neumann

2004-11-12 18:29  winkelma

	* testsuite/test_ns_ipstab/main.cpp:

	* grouped user defined functions into class EthierSteinmanSteady *
	added option for neumann boundary conditions on part of the
	boundary

2004-11-12 18:16  gfourestey

	* testsuite/test_fsi/main.cpp:

	tolerence are now read from the data file

2004-11-12 15:07  winkelma

	* life/lifefem/bcHandler.cpp:

	add message to std::cerr in case of inconsistent state may be
	removed once every program catches exceptions

2004-11-12 14:56  winkelma

	* testsuite/: test_masstransport/main.cpp, test_ns_cyl/main.cpp,
	test_coupling_3d0d/main_FSI0d.cpp, test_ns_ipstab/main.cpp:

	comment change about flag added to BCHandler constructor call

2004-11-12 10:23  winkelma

	* testsuite/test_ns_ipstab/main.cpp:

	tell NS solver that BC is full essential ...forgot this one...

2004-11-12 10:20  winkelma

	* testsuite/test_ns_ipstab/main.cpp:

	* linearize convective terms around exact solution if marked in
	data file * print also relative errors * do not assume dt=0.01

2004-11-12 10:10  winkelma

	* testsuite/test_ns_ipstab/data:

	use old defaults from code for new parameters

2004-11-12 10:08  winkelma

	* testsuite/test_ns_ipstab/data:

	* set recently added options * decrease maximal iteration count and
	GMRES restart barrier * use ilu for PETSc and ilut for Aztec * make
	PETSc shut up

2004-11-12 09:39  winkelma

	* life/lifealg/: SolverPETSC.cpp, SolverPETSC.hpp:

	added setNullSpace(...)

2004-11-12 09:36  winkelma

	* life/lifefem/sobolevNorms.hpp:

	* elem_integral and elem_integral_diff integrate only one vectorial
	component * overloaded elem_integral with a function that
	integrates only a FE function

2004-11-12 09:22  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	* added removeMean() in order to be able to remove mean pressure in
	  - initial guess for linear solve   - solution obtained from
	linear solve   - initial condition * do not set pressure node to 0
	in post processing any more * additional divergence stabilization
	term can now be enabled in data file * diagonalization coefficient
	can now be set in data file (0=disabled) * set null space for PETSc
	if BCs are fully essential and matrix is not diag.  * print a
	warning if linear solve did't converge

2004-11-12 06:25  prudhomm

	* life/lifefem/bcHandler.cpp, life/lifefem/bcHandler.hpp,
	life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/NavierStokesSolverPC.hpp,
	life/lifesolver/NavierStokesSolverPCnotincr.hpp,
	life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	better naming : bcHandler::fullEssential() ->
	bcHandler::hasOnlyEssential() removed bcHandler::setNumber() which
	was still a member function of bcHandler.

2004-11-11 17:01  gfourestey

	* life/lifesolver/steklovPoincareBase.cpp:

	modified algorithm so that aitken is called inside solvejac for
	every precond

2004-11-11 16:45  winkelma

	* testsuite/test_coupling_3d0d/main_FSI0d.cpp:

	tell NS solver that BC is full essential

2004-11-11 16:32  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	bug fix

2004-11-11 16:20  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	linesearch inserted

2004-11-11 16:18  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	no tolerance for zero entries in the matrix

2004-11-11 16:07  winkelma

	* testsuite/test_ns_cyl/main.cpp:

	* tell NS solver that BC is full essential * do not assume dt=0.01
	* reformatted for readability

2004-11-11 15:11  winkelma

	* testsuite/test_masstransport/main.cpp:

	tell NS solver that BC is full essential

2004-11-11 15:10  winkelma

	* life/lifefem/bcHandler.cpp:

	check for consistency in BCHandler::fullEssential()

2004-11-11 15:08  winkelma

	* life/lifefem/bcHandler.hpp:

	added typedef to constant iterator

2004-11-11 10:49  winkelma

	* testsuite/test_darcy/Makefile.am:

	fix typo

2004-11-10 18:20  gfourestey

	* life/lifealg/: generalizedAitken.hpp, nonLinRichardson.hpp:

	updated versions

2004-11-10 18:11  moura

	* testsuite/test_coupling_3d0d/: main.cpp, data:

	Changed name...

2004-11-10 18:05  moura

	* testsuite/test_coupling_3d0d/: Makefile.am, testsuite.at:

	New 3d-0d coupling test: coupling 3d compliant (fsi) and 0d. I'm
	enabling the automatic test for this test case, although it takes
	quite a long time (about 25 min). I'm doing it for now and anyway
	it is the last test. If this causes too much trouble we can always
	disable it (although I think it is important to test it...).

2004-11-10 18:01  moura

	* testsuite/test_coupling_3d0d/: data_NS0d, main_NS0d.cpp:

	The test already existing (coupling 3d non compliant and 0d). The
	files names changed for cosmetic reasons....

2004-11-10 17:58  moura

	* testsuite/test_coupling_3d0d/: ud_functions.hpp,
	zeroDModelSolver.hpp:

	New test: coupling 3d compliant (FSI) and 0d.

2004-11-10 17:55  moura

	* testsuite/test_coupling_3d0d/: data_FSI0d, main_FSI0d.cpp,
	operFS.cpp, operFS.hpp:

	New test: coupling 3d compliant (FSI) with 0d. For now it doesn't
	use the FSI interface classes from Gilles, but it will come soon
	;).  CVS
	----------------------------------------------------------------------

2004-11-10 17:52  moura

	* testsuite/data/mesh/inria/Makefile.am:

	Modify to include the new meshes.

2004-11-10 17:51  moura

	* testsuite/data/mesh/inria/: tube.mesh, vessel.mesh:

	Meshes to use in the 30-0d coupling in the non compliant case
	(FSI). Very simple mesh (very few nodes) with the "right" indentity
	flags.

2004-11-10 17:30  vergara

	* life/lifesolver/NavierStokesWithFlux_new.hpp:

	eliminate the member timeAdvance in NSWithFlux_new.hpp and
	generalize the algorithm for one imposed flux even in the case in
	which the surface is not perpendicular to axis z.

2004-11-10 15:17  vmartin

	* testsuite/test_onedmodel/oneDModelSolver.hpp:

	small fix: cholesky by default.

2004-11-10 15:10  gfourestey

	* life/lifesolver/VenantKirchhofSolver.hpp:

	updated version for DD

2004-11-10 15:09  gfourestey

	* life/lifesolver/fixedPointBase.cpp:

	fixed sign bug

2004-11-10 15:07  vmartin

	* testsuite/test_onedmodel/: Makefile.am, main.cpp,
	oneDModelSolver.cpp, oneDModelSolver.hpp, triDiagCholesky.hpp,
	triDiagLU.hpp:

	got rid of RNM (passed to boost::vector).

2004-11-10 15:06  vmartin

	* life/lifearray/tridiagMatrix.hpp:

	passed from RNM to boost::vector

2004-11-10 13:39  vmartin

	* testsuite/test_onedmodel/: triDiagCholesky.hpp, triDiagLU.hpp:

	added tridiag solvers for branch 1d

2004-11-10 13:23  vmartin

	* testsuite/test_onedmodel/triDiagLU.hpp:

	use "boostvec.data().begin()" rather than "& boostvec(0)"

2004-11-10 11:55  vmartin

	* testsuite/test_onedmodel/: oneDModelSolver.cpp,
	oneDModelSolver.hpp, triDiagCholesky.hpp, triDiagLU.hpp:

	prepared oned for the templatisation of the tridiagonal solver
	(lapack lu / cholesky).

2004-11-10 10:02  vmartin

	* testsuite/test_onedmodel/: Makefile.am, main.cpp,
	oneDModelSolver.cpp, oneDModelSolver.hpp, triDiagCholesky.hpp,
	triDiagLU.hpp:

	cholesky factorization for tridiag symmetric matrices added.  use
	it to solve one d problem (symmetrised the BC treatment) created an
	interface for lapack lu tridiag solve.(to be completed)

2004-11-09 22:37  gfourestey

	* life/lifesolver/steklovPoincareBase.cpp:

	steklov-poincare algorithm is up and running (at least DN, NN under
	investigation)

2004-11-09 16:52  vergara

	* testsuite/test_ns_cyl_flux/main_new.cpp:

	for exact version: __ns_with_flux.setStrategy(0);

	for the inexact one: __ns_with_flux.setStrategy(1);

2004-11-09 16:23  prudhomm

	* testsuite/lifealg/: test_linearsolvers.cpp, test_umfpack.cpp:

	disable umfpack solver for now should back soon

2004-11-09 16:11  prudhomm

	* life/lifefem/bcManage.hpp:

	added experimental usage of ublas matrices

2004-11-09 16:10  prudhomm

	* life/lifefilters/: Makefile.am, importer.cpp, importer.hpp:

	added frontend for mesh readers

2004-11-09 16:09  prudhomm

	* NEWS:

	update

2004-11-09 16:08  prudhomm

	* life/lifefilters/readMesh3D.hpp:

	added frontend(importer) to mesh readers , not yet finished added
	gmsh reader

2004-11-09 15:46  prudhomm

	* life/lifearray/vecUnknown.hpp:

	give a name to the unknowns will be useful for the filters

2004-11-09 15:46  prudhomm

	* life/lifealg/SolverPETSC.hpp:

	default SAME_PRECONDITIONER instead of SAME_NONZERO_PATTERN

2004-11-09 15:45  prudhomm

	* life/lifealg/: SolverUMFPACK.cpp, SolverUMFPACK.hpp:

	fix for umfpack solver

2004-11-09 15:45  prudhomm

	* life/lifefem/defQuadRuleFE.cpp:

	indentation fixes

2004-11-09 15:44  prudhomm

	* life/lifefem/refFE.hpp:

	anything is better than a #define

2004-11-09 14:19  vergara

	* testsuite/test_ns_cyl_flux/main_new.cpp:

	you call __ns_with_flux.initialize(u0,p0,0.0,dt); and
	__ns_with_flux.iterate( time ); for the exact version. You call
	__ns_with_flux.initialize_inexact(u0,p0,0.0,dt); and
	__ns_with_flux.iterate_inexact( time ); for the inexact one. If the
	flux imposed is one, the two versions are the same.

2004-11-09 14:16  vergara

	* life/lifesolver/NavierStokesWithFlux_new.hpp:

	Inexact very fast version for two imposed fluxes problem. You solve
	1 instead of 3 NS each time step. The error seems to be reasonable.

2004-11-09 13:07  vmartin

	* doc/tex/lifev.bib:

	url added

2004-11-09 11:42  gfourestey

	* testsuite/test_darcy/main.cpp:

	bc.setNumber not requiered anymore

2004-11-09 11:29  gfourestey

	* life/lifesolver/operFS.cpp, life/lifesolver/operFS.hpp,
	life/lifesolver/steklovPoincareBase.cpp,
	life/lifesolver/steklovPoincareBase.hpp,
	life/lifesolver/exactJacobianBase.cpp,
	life/lifesolver/exactJacobianBase.hpp,
	life/lifesolver/fixedPointBase.cpp,
	life/lifesolver/fixedPointBase.hpp, testsuite/test_fsi/main.cpp:

	non FSI boundary conditions must now be set in main.cpp

2004-11-09 11:27  gfourestey

	* life/lifefem/: bcHandler.cpp, bcHandler.hpp:

	number of BC are no longer requiered before setting them

2004-11-09 10:16  gerbeau

	* testsuite/test_fhn/: data_recduct, fhnHandler.cpp, fhnSolver.cpp,
	user_fct.cpp, user_fct.hpp:

	Test case 1 is added, for analytical validations

2004-11-09 09:57  vmartin

	* doc/tex/lifev.bib:

	references for darcy

2004-11-08 15:07  vmartin

	* testsuite/test_onedmodel/: datanl2, testsuite.at:

	disabling only 1 of the two graceplots (I can't have them open for
	both tubes so far)

2004-11-08 14:47  fernandez

	* testsuite/test_fsi_newton/main.cpp:

	Simplified version: 1. using BCVector for u and du on the interface
	2. Removing BCFunction bcf on reference 20 for u and du. Now data
	comes directly from BCVectors u_wall and du_wall

2004-11-08 14:05  prudhomm

	* testsuite/test_onedmodel/testsuite.at:

	disable grace when in batch mode

2004-11-08 14:01  gerbeau

	* testsuite/data/mesh/inria/recduct.mesh:

	a new mesh added (rectangular duct), used for an analytical
	solution of Fitzhugh-Nagumo equations

2004-11-08 13:57  vergara

	* life/lifesolver/NavierStokesWithFlux_new.hpp:

	fast version of two fluxes imposed problem: now 3 Navier-Stokes for
	each time step are required, instead of 4 (as in the previous
	version).

2004-11-08 13:55  prudhomm

	* AUTHORS, NEWS, life/lifefilters/readMesh3D.hpp:

	added netgen read/writer(solution) by Mauro

2004-11-08 10:30  prudhomm

	* AUTHORS, INSTALL, NEWS, configure.in.bot, configure.in.in:

	revert mauro changes , my script sucked, quite a few files were not
	reverted

2004-11-08 10:16  prudhomm

	* life/lifecore/: LDebug.cpp, LDebug.hpp:

	removed

2004-11-08 10:16  prudhomm

	* life/lifecore/: Makefile.am, bareItems.hpp, basisElSh.hpp,
	dataTime.hpp, dataTransient.cpp, dataTransient.hpp, debug.cpp:

	lifecore is fixed

2004-11-08 10:14  prudhomm

	* life/Makefile.am:

	filters before solvers

2004-11-08 09:56  prudhomm

	* life/lifealg/: Makefile.am, SolverAztec.cpp, SolverAztec.hpp,
	SolverPETSC.cpp, SolverPETSC.hpp, algebraic_facto.hpp,
	dataAztec.cpp, dataAztec.hpp, generalizedAitken.hpp,
	linesearch_cubic.hpp, linesearch_parabolic.hpp, newton.hpp,
	nonLinRichardson.hpp, picard.hpp:

	fixed lifealg

2004-11-08 09:55  vergara

	* testsuite/test_ns_cyl_flux/ud_functions.hpp:

	sorry, friday I forgot this one.

2004-11-08 09:43  prudhomm

	* life/lifearray/: elemMat.hpp, elemVec.hpp, Makefile.am,
	pattern.cpp, pattern.hpp, sparseArray.cpp, sparseArray.hpp,
	tab.hpp, vecUnknown.cpp, vecUnknown.hpp:

	it seems that I forgot these ones

2004-11-08 09:00  prudhomm

	* admin/ac_check_boost.m4, life/lifecore/util_string.cpp,
	life/lifefem/Makefile.am, life/lifefem/assemb.cpp,
	life/lifefem/assemb.hpp, life/lifefem/bcCond.cpp,
	life/lifefem/bcCond.hpp, life/lifefem/bcVector.cpp,
	life/lifefem/bcVector.hpp, life/lifefem/bdf.cpp,
	life/lifefem/bdf.hpp, life/lifefem/currentFE.cpp,
	life/lifefem/defQuadRuleFE.cpp,
	life/lifefem/dofInterface3Dto3D.hpp,
	life/lifefem/dofInterfaceBase.hpp,
	life/lifefem/dofInterfaceHandler.cpp,
	life/lifefem/dofInterfaceHandler.hpp, life/lifefem/elemOper.cpp,
	life/lifefem/elemOper.hpp, life/lifefem/elemOper_ext.hpp,
	life/lifefem/meshMotion.hpp, life/lifefem/sobolevNorms.hpp,
	life/lifefem/values.hpp, life/lifefilters/ensight7Writer.hpp,
	life/lifefilters/medit_wrtrs.cpp, life/lifefilters/medit_wrtrs.hpp,
	life/lifefilters/mesh_util.hpp, life/lifefilters/readMesh3D.hpp,
	life/lifemesh/dataMesh.hpp, life/lifemesh/geo0D.cpp,
	life/lifemesh/geo0D.hpp, life/lifemesh/identifier.cpp,
	life/lifemesh/identifier.hpp, life/lifemesh/markers_base.cpp,
	life/lifemesh/markers_base.hpp, life/lifemesh/mesh_util_base.hpp,
	life/lifesolver/ElasticStructureHandler.hpp,
	life/lifesolver/Makefile.am,
	life/lifesolver/NavierStokesAleHandler.hpp,
	life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/NavierStokesSolverPC.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/convDiffReactHandler.hpp,
	life/lifesolver/convDiffReactSolverPC.hpp,
	life/lifesolver/dataNavierStokes.hpp, testsuite/Makefile.am,
	testsuite/testsuite.at, testsuite/data/mesh/inria/Makefile.am,
	testsuite/lifealg/Makefile.am,
	testsuite/lifealg/test_linearsolvers.cpp,
	testsuite/lifealg/testsuite.at, testsuite/lifecore/Makefile.am,
	testsuite/test_bdf/main.cpp, testsuite/test_bdf/main.hpp,
	testsuite/test_darcy/Makefile.am, testsuite/test_darcy/data,
	testsuite/test_darcy/main.cpp, testsuite/test_darcy/testsuite.at,
	testsuite/test_darcy/user_fct.cpp,
	testsuite/test_darcy/user_fct.hpp,
	testsuite/test_essentialbc/main.cpp, life/lifesolver/nsip.hpp,
	testsuite/test_fsi_dd/data, testsuite/test_fsi_dd/main.cpp,
	testsuite/test_fsi_dd/operFS.cpp, testsuite/test_fsi_dd/operFS.hpp,
	testsuite/test_fsi_dd/testsuite.at,
	testsuite/test_fsi_newton/main.cpp,
	testsuite/test_fsi_newton/operFS.cpp,
	testsuite/test_fsi_newton/operFS.hpp,
	testsuite/test_fsi_picard/main.cpp,
	testsuite/test_fsi_picard/operFS.hpp,
	testsuite/test_laplacian/main.cpp,
	testsuite/test_linearelasticity/main.cpp,
	testsuite/test_mass_coupling/main.cpp,
	testsuite/test_masstransport/main.cpp,
	testsuite/test_mixte/main.cpp, testsuite/test_naturalbc/main.cpp,
	testsuite/test_ns_bcvec/main.cpp, testsuite/test_ns_bdf/main.cpp,
	testsuite/test_ns_cyl/main.cpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/data, testsuite/test_ns_ipstab/main.cpp,
	testsuite/test_ns_ipstab/ud_functions.hpp,
	testsuite/test_ns_sstress/main.cpp,
	testsuite/test_onedmodel/Makefile.am,
	testsuite/test_onedmodel/basicOneDMesh.cpp,
	testsuite/test_onedmodel/basicOneDMesh.hpp,
	testsuite/test_onedmodel/data,
	testsuite/test_onedmodel/dataOneDModel.cpp,
	testsuite/test_onedmodel/dataOneDModel.hpp,
	testsuite/test_onedmodel/datanl, testsuite/test_onedmodel/main.cpp,
	testsuite/test_onedmodel/oneDModelHandler.cpp,
	testsuite/test_onedmodel/oneDModelHandler.hpp,
	testsuite/test_onedmodel/oneDModelSolver.cpp,
	testsuite/test_onedmodel/oneDModelSolver.hpp,
	testsuite/test_onedmodel/oneDNonLinModelParam.cpp,
	testsuite/test_onedmodel/oneDNonLinModelParam.hpp,
	testsuite/test_onedmodel/testsuite.at,
	testsuite/test_onedmodel/vectorFunction1D.cpp,
	testsuite/test_onedmodel/vectorFunction1D.hpp,
	testsuite/test_p2/main.cpp, testsuite/test_postproc/main.cpp,
	testsuite/test_q1/main.cpp:

	REVERT ALL MAURO CHANGES. we are back to yesterday's version

2004-11-08 04:42  mm0

	* AUTHORS, INSTALL, NEWS, configure.in.bot, configure.in.in,
	admin/ac_check_boost.m4, doc/tex/lifev.bib, life/Makefile.am,
	life/lifealg/Makefile.am, life/lifealg/SolverAztec.cpp,
	life/lifealg/SolverAztec.hpp, life/lifealg/SolverPETSC.cpp,
	life/lifealg/SolverPETSC.hpp, life/lifealg/algebraic_facto.hpp,
	life/lifealg/dataAztec.cpp, life/lifealg/dataAztec.hpp,
	life/lifealg/generalizedAitken.hpp,
	life/lifealg/linesearch_cubic.hpp,
	life/lifealg/linesearch_parabolic.hpp, life/lifealg/newton.hpp,
	life/lifealg/nonLinRichardson.hpp, life/lifealg/picard.hpp,
	life/lifearray/Makefile.am, life/lifearray/elemMat.hpp,
	life/lifearray/elemVec.hpp, life/lifearray/pattern.cpp,
	life/lifearray/pattern.hpp, life/lifearray/sparseArray.cpp,
	life/lifearray/sparseArray.hpp, life/lifearray/tab.hpp,
	life/lifearray/vecUnknown.cpp, life/lifearray/vecUnknown.hpp,
	life/lifecore/Makefile.am, life/lifecore/bareItems.hpp,
	life/lifecore/basisElSh.hpp, life/lifecore/dataTime.hpp,
	life/lifecore/dataTransient.cpp, life/lifecore/dataTransient.hpp,
	life/lifecore/debug.cpp, life/lifecore/util_string.cpp,
	life/lifefem/Makefile.am, life/lifefem/assemb.cpp,
	life/lifefem/assemb.hpp, life/lifefem/bcCond.cpp,
	life/lifefem/bcCond.hpp, life/lifefem/bcVector.cpp,
	life/lifefem/bcVector.hpp, life/lifefem/bdf.cpp,
	life/lifefem/bdf.hpp, life/lifefem/currentFE.cpp,
	life/lifefem/defQuadRuleFE.cpp,
	life/lifefem/dofInterface3Dto3D.hpp,
	life/lifefem/dofInterfaceBase.hpp,
	life/lifefem/dofInterfaceHandler.cpp,
	life/lifefem/dofInterfaceHandler.hpp, life/lifefem/elemOper.cpp,
	life/lifefem/elemOper.hpp, life/lifefem/elemOper_ext.hpp,
	life/lifefem/meshMotion.hpp, life/lifefem/sobolevNorms.hpp,
	life/lifefem/values.hpp, life/lifefilters/ensight7Writer.hpp,
	life/lifefilters/medit_wrtrs.cpp, life/lifefilters/medit_wrtrs.hpp,
	life/lifefilters/mesh_util.hpp, life/lifefilters/readMesh3D.hpp,
	life/lifemesh/dataMesh.hpp, life/lifemesh/geo0D.cpp,
	life/lifemesh/geo0D.hpp, life/lifemesh/identifier.cpp,
	life/lifemesh/identifier.hpp, life/lifemesh/markers_base.cpp,
	life/lifemesh/markers_base.hpp, life/lifemesh/mesh_util_base.hpp,
	life/lifesolver/ElasticStructureHandler.hpp,
	life/lifesolver/Makefile.am,
	life/lifesolver/NavierStokesAleHandler.hpp,
	life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/NavierStokesSolverPC.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/convDiffReactHandler.hpp,
	life/lifesolver/convDiffReactSolverPC.hpp,
	life/lifesolver/dataNavierStokes.hpp, testsuite/Makefile.am,
	testsuite/testsuite.at, testsuite/data/mesh/inria/Makefile.am,
	testsuite/lifealg/Makefile.am,
	testsuite/lifealg/test_linearsolvers.cpp,
	testsuite/lifealg/testsuite.at, testsuite/lifecore/Makefile.am,
	testsuite/test_bdf/main.cpp, testsuite/test_bdf/main.hpp,
	testsuite/test_darcy/Makefile.am, testsuite/test_darcy/data,
	testsuite/test_darcy/main.cpp, testsuite/test_darcy/testsuite.at,
	testsuite/test_darcy/user_fct.cpp,
	testsuite/test_darcy/user_fct.hpp,
	testsuite/test_essentialbc/main.cpp, testsuite/test_fsi_dd/data,
	testsuite/test_fsi_dd/main.cpp, testsuite/test_fsi_dd/operFS.cpp,
	testsuite/test_fsi_dd/operFS.hpp,
	testsuite/test_fsi_dd/testsuite.at,
	testsuite/test_fsi_newton/main.cpp,
	testsuite/test_fsi_newton/operFS.cpp,
	testsuite/test_fsi_newton/operFS.hpp,
	testsuite/test_fsi_picard/main.cpp,
	testsuite/test_fsi_picard/operFS.hpp,
	testsuite/test_laplacian/main.cpp,
	testsuite/test_linearelasticity/main.cpp,
	testsuite/test_mass_coupling/main.cpp,
	testsuite/test_masstransport/main.cpp,
	testsuite/test_mixte/main.cpp, testsuite/test_naturalbc/main.cpp,
	testsuite/test_ns_bcvec/main.cpp, life/lifesolver/nsip.hpp,
	testsuite/test_ns_bdf/main.cpp, testsuite/test_ns_cyl/main.cpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/data, testsuite/test_ns_ipstab/main.cpp,
	testsuite/test_ns_ipstab/ud_functions.hpp,
	testsuite/test_ns_sstress/main.cpp,
	testsuite/test_onedmodel/Makefile.am,
	testsuite/test_onedmodel/basicOneDMesh.cpp,
	testsuite/test_onedmodel/basicOneDMesh.hpp,
	testsuite/test_onedmodel/data,
	testsuite/test_onedmodel/dataOneDModel.cpp,
	testsuite/test_onedmodel/dataOneDModel.hpp,
	testsuite/test_onedmodel/datanl, testsuite/test_onedmodel/main.cpp,
	testsuite/test_onedmodel/oneDModelHandler.cpp,
	testsuite/test_onedmodel/oneDModelHandler.hpp,
	testsuite/test_onedmodel/oneDModelSolver.cpp,
	testsuite/test_onedmodel/oneDModelSolver.hpp,
	testsuite/test_onedmodel/oneDNonLinModelParam.cpp,
	testsuite/test_onedmodel/oneDNonLinModelParam.hpp,
	testsuite/test_onedmodel/testsuite.at,
	testsuite/test_onedmodel/vectorFunction1D.cpp,
	testsuite/test_onedmodel/vectorFunction1D.hpp,
	testsuite/test_p2/main.cpp, testsuite/test_postproc/main.cpp,
	testsuite/test_q1/main.cpp:

	hello, I submit this version a bit odd, becouse it comes from bug
	fixes and improvements that I made to version lifev-0.4.1.tar.bz2
	(not CVS) cause I had not CVS access when I began.  so this version
	doesn't include all your changes made between 0.4.1 and the last
	one.  Anyway this includes support for reading netgen meshed and
	writing netgen solutions, a test_netgen in testsuite and many bug
	fixes.	I hope it's all ok, becouse I simply copyed over a
	checkedout version my files recursively. If you have problems
	compiling you could try autoconf at the beginning. Bye

2004-11-05 17:03  vergara

	* testsuite/test_ns_cyl_flux/main_new.cpp:

	you pass __ns->yesFlux(1). The flag 1 is for the flux problem. For
	the other problems the flag is set equal to 0.

2004-11-05 17:01  vergara

	* life/lifesolver/NavierStokesSolverPC.hpp:

	NSSolverPC comes back to be one

2004-11-05 16:41  vmartin

	* testsuite/test_onedmodel/: main.cpp, oneDModelHandler.cpp,
	oneDModelHandler.hpp, oneDModelSolver.hpp,
	oneDNonLinModelParam.cpp, oneDNonLinModelParam.hpp,
	vectorFunction1D.cpp, vectorFunction1D.hpp:

	a little clean up

2004-11-05 15:33  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	* add function linearize() which linearizes the convective term
	around a given	 velocity function (preferably the exact solution
	if available)	if not called, the convective terms are linearized
	around the last iteration   in the steady case or around the bdf
	extrapolation in the unsteady case * do not fix one pressure node
	for matrix definiteness as this breaks	 convergence in the time
	dependent case * set first pressure node to zero by post processing
	* make sure _u and _p contain the initial values after peeking into
	bdf

2004-11-05 13:55  winkelma

	* life/lifefem/bdf.hpp:

	fixed ugly bug: initialization with given function chose every
	physical component at a different timestep (u0x at t=0, u0y at
	t=-dt, etc.)

	This might increase convergence behaviour in tests with exact
	solutions :-)

2004-11-05 13:26  prudhomm

	* life/lifesolver/NavierStokesWithFlux_new.hpp:

	use Vector and Matrix instead of C-like arrays to ease the reading
	of the formulas

	Christian what do u think ? I don t think I have made a bouh-bouh

2004-11-05 13:20  prudhomm

	* life/lifearray/tab.hpp:

	import inner_prod and outer_prod for inner products and
	outer_products

	see
	http://www.boost.org/libs/numeric/ublas/doc/vector_expression.htm

	for more details

2004-11-05 12:57  prudhomm

	* life/lifesolver/NavierStokesWithFlux_new.hpp:

	 * throw a std::logic_error if number of fluxes is not 1 or 2
	 * get rid of one warning

2004-11-05 12:53  prudhomm

	* life/lifesolver/NavierStokesWithFlux_new.hpp,
	testsuite/test_ns_cyl_flux/main_new.cpp:

	no more label in iterate

	Christian can u check ?

2004-11-05 10:33  vergara

	* life/lifesolver/NavierStokesWithFlux_new.hpp:

	Now NSWithFlux_new.hpp has got the possibility to impose both one
	and two fluxes

2004-11-05 08:53  prudhomm

	* testsuite/lifecore/test_boost.cpp:

	reduced TGV

2004-11-05 08:53  prudhomm

	* testsuite/lifecore/: Makefile.am, test_boost.cpp:

	added test for boost

	only one for now: pointer function versus boost::function in fact
	we should have something like benchmark since it is not really a
	test

2004-11-05 07:30  moura

	* testsuite/test_coupling_3d0d/data:

	minimal correction in verbose

2004-11-05 07:29  moura

	* testsuite/test_coupling_3d0d/testsuite.at:

	Forgot this one.

2004-11-05 06:28  moura

	* testsuite/test_coupling_3d0d/: Makefile.am, data, main.cpp,
	ud_functions.hpp, zeroDModelSolver.hpp:

	Abstraction for the 3d0d coupling: adjustment of the test to the
	new interface class.

2004-11-05 06:27  moura

	* testsuite/test_coupling_3d0d/: C3d0d.hpp, flowRate.hpp,
	meanPressure.hpp:

	Abstractian classes for the coupling 3d0d: interface classes (one
	for each coupling strategy).

2004-11-04 18:03  gerbeau

	* testsuite/test_fhn/fhnSolver.cpp:

	Small change for compliance with boost vector

2004-11-04 17:59  vergara

	* life/lifesolver/NavierStokesWithTwoFluxes.hpp:

	for the moment I commit this. Now it works well. The
	NSWithFlux_new.hpp with the possibility to impose 2 fluxes is under
	check.

2004-11-04 17:58  vergara

	* life/lifesolver/NavierStokesSolverPCnotincr.hpp:

	non incremental version of the solver

2004-11-04 17:30  vergara

	* testsuite/data/mesh/inria/karotis-TUG_course.mesh:

	course mesh of the bifurcation (thanks to martin prosi)

2004-11-04 15:00  winkelma

	* life/lifesolver/NavierStokesHandler.hpp:

	bugfix in calculation of relative pressure error. calculated values
	were too low

2004-11-04 14:59  winkelma

	* life/lifefem/sobolevNorms.hpp:

	added function elem_integral which allows for easy computation of
	mean values useful for fields defined up to a constant

2004-11-04 14:26  winkelma

	* life/lifesolver/NavierStokesHandler.hpp:

	calculate relative errors on demand

2004-11-04 08:36  fernandez

	* testsuite/test_fsi_newton/: main.cpp, operFS.cpp:

	Using Vector class of boost. Now test compiles

2004-11-04 08:17  winkelma

	* life/lifesolver/NavierStokesHandler.hpp:

	* factor out nodal velocity interpolation code into
	uInterpolate(...)   -> useful for linearization around exact
	solution * rewrapped for readability * translated non-english
	comments to english

	PLEASE USE ENGLISH WORDS AND LANGUAGE IN THE ENTIRE CODE (variable
	names, comments, output, etc.) Not all LifeV users understand
	italian!

2004-11-04 07:16  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	* define a variable beta for consistent change of linearization
	velocity * print number of iterations and condition number
	estimate, if available

2004-11-04 07:11  winkelma

	* life/lifesolver/nsipterms.hpp,
	testsuite/test_ns_ipstab/ipStabilization.hpp:

	* calculate normal only if needed * use penalize jumps of
	divergence and streamline gradient by default

2004-11-03 15:31  vmartin

	* NEWS:

	oned: two tubes

2004-11-03 15:27  vmartin

	* testsuite/test_onedmodel/: Makefile.am, basicOneDMesh.cpp,
	basicOneDMesh.hpp, data, dataOneDModel.cpp, dataOneDModel.hpp,
	datanl, datanl2, interface2Vessels.cpp, interface2Vessels.hpp,
	main.cpp, main_twotubes.cpp, oneDModelSolver.cpp,
	oneDModelSolver.hpp, testsuite.at, vectorFunction1D.cpp,
	vectorFunction1D.hpp:

	The one D solver allows to couple two tubes now. The results seem
	OK.  An interface between 2 tubes is created.  Two automatic tests
	are run (1 tube or 2).

	A serious clean-up is now necessary.  A clever interface should be
	devised.  A multitube (>2) test should be implemented.	A
	bifurcation should be done also.

2004-11-03 13:55  gfourestey

	* life/lifealg/: generalizedAitken.hpp, newton.hpp,
	nonLinRichardson.hpp:

	output now display useful informations and general update

2004-11-03 12:27  prudhomm

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	port the changes from lifesolver regarding the source term.

2004-11-03 12:27  prudhomm

	* testsuite/test_ns_cyl_flux/main_new.cpp:

	* use the setSourceTerm()

2004-11-03 12:27  prudhomm

	* testsuite/test_coupling_3d0d/main.cpp:

	* try to fix AM problems, should be ok now but it is not
	satisfactory   from the design POV * use the setSourceTerm()

2004-11-03 12:25  prudhomm

	* life/lifesolver/: ElasticStructureHandler.hpp,
	NavierStokesAleHandler.hpp, NavierStokesAleSolverPC.hpp,
	NavierStokesHandler.hpp, NavierStokesSolverPC.hpp,
	NavierStokesWithFlux_new.hpp, VenantKirchhofSolver.hpp,
	convDiffReactHandler.hpp, convDiffReactSolverPC.hpp,
	darcySolver.hpp:

	many changes and among them

	* timeAdvance() more powerful by accepting now functors * NS
	provides a setSourceTerm() sourceTerm() getter/setter for the
	source	 term so that it can be stored, it is useful for
	NavierStokesWithFlux_new   in the 2 fluxes case

2004-11-03 11:01  prudhomm

	* life/lifecore/: dataTime.hpp, dataTransient.cpp,
	dataTransient.hpp:

	minor cleanups

2004-11-03 08:03  prudhomm

	* life/lifesolver/NavierStokesWithTwoFluxes.hpp:

	pressure is a ScalUnknown and not a PhysVectUnknown now we can get
	rid of the loops for pressure copies

2004-11-03 07:55  prudhomm

	* testsuite/test_coupling_3d0d/main.cpp:

	fix for medit

2004-11-02 19:43  simone

	* life/: lifealg/generalizedAitken.hpp,
	lifesolver/steklovPoincareBase.cpp:

	corrected the signes for the nth time.	we hope it is the last time
	... :-)

2004-11-02 03:33  simone

	* life/lifealg/generalizedAitken.hpp:

	seems that the test on the determinant must be much less severe

2004-11-01 16:06  simone

	* life/lifealg/: generalizedAitken.hpp:

	when det ~0, tell how big it is ...

2004-11-01 16:02  simone

	* testsuite/test_fsi/main.cpp:

	UInt for method and precond, as well as maxpf in data

2004-11-01 15:41  gfourestey

	* life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/fixedPointBase.cpp,
	life/lifesolver/fixedPointBase.hpp, life/lifesolver/operFS.cpp,
	life/lifesolver/operFS.hpp,
	life/lifesolver/steklovPoincareBase.cpp,
	life/lifesolver/steklovPoincareBase.hpp,
	testsuite/test_fsi/main.cpp, testsuite/test_fsi/ud_functions.cpp:

	bug fix and general update

2004-10-29 14:02  vergara

	* testsuite/test_ns_cyl_flux/Makefile.am:

	I forgot the makefile.am for twofluxes

2004-10-29 13:54  vmartin

	* testsuite/test_onedmodel/: main_twotubes.cpp,
	oneDModelSolver.cpp, oneDModelSolver.hpp:

	next step toward two tubes. not yet finished

2004-10-29 13:44  moura

	* testsuite/test_coupling_3d0d/: data, main.cpp,
	zeroDModelSolver.hpp:

	Preparing to have an interface class (cleaned zeroDModelSolver,
	even if very simple prototype!)

2004-10-29 13:26  simone

	* life/lifealg/generalizedAitken.hpp:

	The determinant was computed with the wrong side.  Moreover, added
	a check on zero with 1E-8

2004-10-29 09:51  vergara

	* testsuite/test_ns_cyl_flux/data:

	new data with possibility to call the bifurcation

2004-10-29 09:50  vergara

	* testsuite/test_ns_cyl_flux/main_ns_twofluxes.cpp:

	main to impose two fluxes generating test_ns_twofluxes. The
	structure of the algorithm is the same of test_ns_flux, i.e. with
	temporal loop in NSWithTwoFluxes.hpp

2004-10-29 09:48  vergara

	* life/lifesolver/NavierStokesWithTwoFluxes.hpp:

	class to impose two fluxes. The test runs but the results are not
	yet so good

2004-10-28 17:15  prudhomm

	* testsuite/lifealg/test_linearsolvers.cpp:

	comment out umfpack until it works properly

2004-10-28 17:14  prudhomm

	* NEWS:

	update the NEWS on darcy

2004-10-28 17:01  prudhomm

	* life/lifearray/vecUnknown.hpp,
	life/lifefilters/ensight7Writer.hpp,
	life/lifefilters/medit_wrtrs.cpp, life/lifefilters/medit_wrtrs.hpp,
	life/lifesolver/NavierStokesWithFlux_new.hpp,
	testsuite/test_coupling_3d0d/main.cpp:

	be const correct in PhysVectUnknown<> ScalUnknown<> be const
	correct in medit writer be const correct in ensight writer added
	medit and ensight observer to 0d3d test case aka no more
	postProcess()

2004-10-28 16:24  vmartin

	* testsuite/test_onedmodel/: main_twotubes.cpp,
	vectorFunction1D.cpp, vectorFunction1D.hpp:

	two tubes... second step

2004-10-28 16:22  vmartin

	* testsuite/test_darcy/: Makefile.am, data, main.cpp, testsuite.at:

	multiple automatic checks for darcy!

2004-10-28 15:26  vmartin

	* testsuite/: Makefile.am, testsuite.at:

	fixed minor bug for make testsuite readded test_darcy

2004-10-28 15:24  prudhomm

	* life/lifesolver/NavierStokesWithFlux_new.hpp,
	testsuite/test_coupling_3d0d/main.cpp:

	added pressure() accessor (send scalar) to NSWithFluxes

	added flux_adaptor() to pass the scalar to the flux functor that
	NSWithFluxes wants to have

2004-10-28 15:17  moura

	* testsuite/test_coupling_3d0d/data:

	Another coupling strategy coming (not finihed)

2004-10-28 14:48  moura

	* testsuite/test_coupling_3d0d/ud_functions.hpp:

	Another coupling strategy coming (not finished)

2004-10-28 14:34  winkelma

	* testsuite/lifealg/test_linearsolvers.cpp:

	* compare solvers with same tolerance * let solver judge success *
	get command line argument through GetPot, available also without
	PETSc

2004-10-28 14:21  moura

	* testsuite/test_coupling_3d0d/zeroDModelSolver.hpp:

	Another coupling strategy coming (nit finished)

2004-10-28 14:17  winkelma

	* life/lifealg/SolverAztec.cpp:

	avoid compiler warning

2004-10-28 14:00  moura

	* testsuite/test_coupling_3d0d/main.cpp:

	Another coupling strategy comming (not finish)

2004-10-28 13:53  winkelma

	* life/lifealg/: SolverPETSC.cpp, SolverPETSC.hpp:

	added method converged()

2004-10-28 13:52  winkelma

	* life/lifealg/: SolverAztec.cpp, SolverAztec.hpp:

	* added method iterations() * added method converted() * use ilu
	preconditioner by default

2004-10-28 12:51  prudhomm

	* testsuite/test_darcy/: data, main.cpp:

	added Martin Prosi testcase (arterial wall)

2004-10-28 12:43  prudhomm

	* life/lifefem/elemOper.cpp, life/lifefem/elemOper.hpp,
	life/lifesolver/darcySolver.hpp,
	life/lifesolver/darcySolverBase.hpp, testsuite/test_darcy/data,
	testsuite/test_darcy/main.cpp, life/lifearray/tab.hpp:

	fixed darcy three tests :  - analytical test  - hex test  - tet
	test

2004-10-28 10:42  vergara

	* testsuite/test_ns_cyl_flux/main_new.cpp:

	setFlux in temporal loop

2004-10-28 10:41  vergara

	* life/lifesolver/NavierStokesWithFlux_new.hpp:

	new version

2004-10-28 10:32  winkelma

	* life/lifearray/pattern.hpp:

	always return const Containter& instead of Container - avoids
	copying of index arrays which is not needed for reading access -
	avoids invalidation of temporary copy

2004-10-28 10:24  winkelma

	* life/lifearray/sparseArray.cpp:

	translated comments and error messages (!) to english

2004-10-28 10:01  winkelma

	* life/lifealg/SolverPETSC.hpp:

	avoid segmentation fault in PETSc 2.2.1

2004-10-28 09:17  moura

	* testsuite/lifealg/test_petsc.cpp:

	Fixed compilation

2004-10-28 09:13  prudhomm

	* testsuite/lifealg/: test_petsc.cpp, test_umfpack.cpp:

	blind fix for AM

2004-10-28 09:04  prudhomm

	* testsuite/lifealg/: Makefile.am, test_petsc.cpp,
	test_umfpack.cpp:

	fixed compilation when	you have boost but not petsc and/or umfpack

2004-10-28 08:04  prudhomm

	* testsuite/test_ns_cyl_flux/Makefile.am:

	added test_new

2004-10-28 08:01  prudhomm

	* testsuite/test_ns_cyl_flux/main_new.cpp,
	testsuite/lifealg/test_umfpack.cpp,
	life/lifesolver/NavierStokesWithFlux_new.hpp:

	added new interface for Navier Stokes with fluxes and new test
	these will have to replace the old ones

2004-10-28 06:19  prudhomm

	* life/lifealg/: SolverUMFPACK.cpp, SolverUMFPACK.hpp:

	move from header to implementation symmetric matrix ok unsymmetric
	matrix not ok

2004-10-28 04:31  prudhomm

	* life/lifealg/Makefile.am:

	fix linkage

2004-10-27 19:42  prudhomm

	* testsuite/lifealg/test_petsc.cpp:

	fix compilation

2004-10-27 19:36  prudhomm

	* testsuite/lifealg/test_petsc.cpp:

	make test_petsc conditiional wrt HAVE_PETSC_H

2004-10-27 16:27  simone

	* life/lifealg/generalizedAitken.hpp:

	added a test on the magnitude of omega: if it is much smaller or
	musch larger than the default one, then it replaces the value with
	the default one.

2004-10-27 15:46  gfourestey

	* life/lifesolver/steklovPoincareBase.cpp:

	sign bugs fixed

2004-10-27 13:14  prudhomm

	* testsuite/lifealg/: Makefile.am, test_linearsolvers.cpp:

	almost there with umfpack it compiles, it runs but it does not give
	the good results ;)

2004-10-27 10:52  winkelma

	* life/lifealg/SolverPETSC.hpp:

	update documentation

2004-10-27 09:48  prudhomm

	* configure.in.in, life/lifealg/Makefile.am,
	life/lifealg/SolverPETSC.cpp, life/lifealg/SolverUMFPACK.cpp,
	life/lifealg/SolverUMFPACK.hpp:

	conditional compilation for umfpack make petsc solver compile

2004-10-27 09:32  prudhomm

	* testsuite/lifealg/test_petsc.cpp, life/debug.areas,
	life/lifealg/SolverPETSC.hpp:

	reinitializing petsc does not seem to work so forget about it

2004-10-27 09:15  prudhomm

	* testsuite/lifealg/test_petsc.cpp:

	check for boost.Test presence

2004-10-27 09:13  prudhomm

	* configure.in.in, admin/ac_check_boost.m4,
	life/lifealg/SolverPETSC.cpp, life/lifealg/SolverPETSC.hpp,
	life/lifearray/CSRMatrix.hpp, testsuite/lifealg/Makefile.am,
	testsuite/lifealg/test_linearsolvers.cpp,
	testsuite/lifealg/test_petsc.cpp, testsuite/lifealg/testsuite.at,
	testsuite/test_fhn/.cvsignore:

	added boost unit test framework library a better petsc manager
	added test for petsc manager (test_petsc) to the testsuite

2004-10-27 08:38  winkelma

	* life/lifearray/CSRMatrix.hpp:

	replaced calls to ia() and ja() by give_ia() and give_ja - avoids
	copying of index arrays which is not needed for reading access -
	fixes bug of invalid iterator on temporary copy (was my fault)

2004-10-27 08:05  prudhomm

	* life/: debug.areas, lifearray/CSRMatrix.hpp,
	lifearray/MSRMatrix.hpp, lifearray/Makefile.am,
	lifearray/MixedMatrix.hpp, lifearray/VBRMatrix.hpp,
	lifearray/sparseArray.hpp:

	split sparseArray.hpp to increase readability now Matrix types have
	their own files

2004-10-26 18:11  vmartin

	* testsuite/test_onedmodel/main_twotubes.cpp:

	2 tubes... not finished yet.

2004-10-26 18:10  vmartin

	* testsuite/test_onedmodel/: data, dataOneDModel.cpp,
	dataOneDModel.hpp, datanl, datanl2, main.cpp, oneDModelSolver.cpp,
	oneDModelSolver.hpp:

	first step toward several tubes...

2004-10-26 18:06  simone

	* life/lifesolver/steklovPoincareBase.cpp:

	just a metter of sorting the member in the constructor

2004-10-26 17:34  gfourestey

	* testsuite/test_fsi/main.cpp,
	life/lifesolver/steklovPoincareBase.cpp,
	life/lifesolver/steklovPoincareBase.hpp:

	bug fix

2004-10-26 15:11  simone

	* life/lifealg/nonLinRichardson.hpp:

	norm is a constant input

2004-10-26 15:09  simone

	* life/lifearray/tab.hpp:

	struct norm_inf_adaptor: operator is constant, hence ' operator()(
	E const& __v ) _const_ '

2004-10-26 15:05  simone

	* life/lifealg/generalizedAitken.hpp,
	life/lifesolver/steklovPoincareBase.cpp,
	life/lifesolver/steklovPoincareBase.hpp, testsuite/test_fsi/data,
	testsuite/test_fsi/main.cpp:

	preparing for N-N preconditioner

2004-10-26 14:50  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	norm bug corrected

2004-10-26 14:40  gfourestey

	* life/lifesolver/: exactJacobianBase.hpp, fixedPointBase.hpp,
	operFS.hpp, steklovPoincareBase.cpp, steklovPoincareBase.hpp:

	compilation problem fixed

2004-10-26 14:15  gfourestey

	* testsuite/test_fsi/: data, main.cpp:

	now methods are set using data file

2004-10-26 13:36  gfourestey

	* life/lifesolver/: NavierStokesAleSolverPC.hpp, operFS.cpp,
	steklovPoincareBase.cpp, steklovPoincareBase.hpp:

	modified steklovPoincare algorithm to match the one in test_fsi_dd

2004-10-26 10:30  prudhomm

	* life/lifealg/SolverAztec.cpp:

	Alexandra

	can u try with this ?

2004-10-26 09:33  prudhomm

	* life/lifearray/vecUnknown.hpp:

	try to avoid infinite loops :)

2004-10-26 09:32  prudhomm

	* life/lifearray/vecUnknown.hpp:

	cleanup ScalUnknown

	now ScalUnknown is as cool as PhysVectUnknown and accepts general
	vector expressions thanks to boost::

2004-10-26 09:20  prudhomm

	* life/: lifearray/vecUnknown.cpp, lifearray/vecUnknown.hpp,
	lifesolver/NavierStokesAleHandler.hpp:

	cleanup physVectoUnknown

	not operator= accepts Vector Expression(Aka expression template)
	thanks to boost

	Fixed wrong(size) Vector assignment in NavierStokesAleSolverPC

2004-10-26 08:54  prudhomm

	* life/lifesolver/NavierStokesAleHandler.hpp:

	fixed conflict with boost::numeric::ublas::sum

2004-10-26 08:23  prudhomm

	* testsuite/test_naturalbc/main.cpp,
	testsuite/test_ns_ipstab/main.cpp, life/lifealg/newton.hpp,
	life/lifealg/picard.hpp, life/lifearray/tab.hpp,
	life/lifearray/vecUnknown.hpp,
	life/lifesolver/NavierStokesAleHandler.hpp,
	life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/exactJacobianBase.cpp,
	life/lifesolver/fixedPointBase.cpp,
	life/lifesolver/steklovPoincareBase.cpp,
	testsuite/lifealg/test_linearsolvers.cpp,
	testsuite/test_fsi/main.cpp, testsuite/test_fsi_dd/main.cpp,
	testsuite/test_fsi_dd/operFS.cpp,
	testsuite/test_fsi_newton/main.cpp,
	testsuite/test_fsi_newton/operFS.cpp,
	testsuite/test_fsi_picard/main.cpp,
	testsuite/test_fsi_picard/operFS.hpp,
	testsuite/test_mass_coupling/main.cpp:

	cleaned up the norms

	maxnorm -> norm_inf l2norm  -> norm_2

	added an adaptor for norm_inf to be passed to newton, picard ...

	norm_inf_adaptor

	added norm_1 and sum as new reductions operations

	norm_1 computes, well, the norm 1 of the vector expression and sum
	the sum of the elements of the Vector expression

	see boost::numeric::ublas -> Vector Expression for more information

2004-10-25 19:39  prudhomm

	* testsuite/test_fsi_dd/main.cpp, testsuite/test_fsi_dd/operFS.hpp,
	testsuite/test_fsi_newton/main.cpp,
	testsuite/test_fsi_newton/operFS.hpp,
	testsuite/test_fsi_picard/main.cpp,
	testsuite/test_fsi_picard/operFS.hpp,
	testsuite/test_linearelasticity/main.cpp,
	testsuite/test_mass_coupling/main.cpp,
	testsuite/test_ns_ipstab/main.cpp, life/lifealg/Makefile.am,
	life/lifealg/vectorNorms.cpp, life/lifealg/vectorNorms.hpp,
	life/lifesolver/Makefile.am, life/lifesolver/operFS.hpp,
	testsuite/test_fsi/main.cpp:

	vectorNorms no more it comes with vecUnknown maxnorm is with norm_2
	and maxnorm

2004-10-25 17:12  gfourestey

	* life/lifearray/: sparseArray.cpp, tab.hpp:

	CP: under max and min now code should compile for g++ < 3.3.4
	hopefully it will make gilles happy ;)

2004-10-25 16:53  prudhomm

	* life/lifearray/: tab.hpp, vecUnknown.hpp:

	removed #if 0 ... #endif areas

2004-10-25 16:44  gfourestey

	* life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/exactJacobianBase.cpp,
	life/lifesolver/fixedPointBase.cpp,
	life/lifesolver/fixedPointBase.hpp, life/lifesolver/operFS.hpp,
	testsuite/test_fsi/data, testsuite/test_fsi/main.cpp:

	unified F/S algorithms are ready

2004-10-25 16:29  prudhomm

	* life/lifesolver/nsip.hpp, testsuite/test_fsi_newton/main.cpp,
	testsuite/test_laplacian/main.cpp, testsuite/test_mixte/main.cpp,
	testsuite/test_naturalbc/main.cpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/main.cpp,
	testsuite/test_onedmodel/oneDModelSolver.cpp,
	testsuite/test_p2/main.cpp, testsuite/test_postproc/main.cpp,
	testsuite/test_q1/main.cpp, testsuite/Makefile.am,
	testsuite/testsuite.at, testsuite/lifealg/test_linearsolvers.cpp,
	testsuite/test_bdf/main.cpp, testsuite/test_bdf/main.hpp,
	testsuite/test_coupling_3d0d/main.cpp,
	testsuite/test_darcy/Makefile.am, testsuite/test_darcy/data,
	testsuite/test_darcy/datatetra, testsuite/test_darcy/main.cpp,
	testsuite/test_essentialbc/main.cpp, testsuite/test_fsi/main.cpp:

	too many changes to remember. Here is what i remember more or less

	* ported all tests to new vector/matrices * disabled darcy for now
	as it is still in reconstruction * disabled compilation of
	test_fsi_*.  test_fsi is the new standard   testsuite directory for
	FSI

2004-10-25 16:27  prudhomm

	* life/: lifecore/debug.cpp, lifecore/util_string.cpp,
	lifefem/assemb.cpp, lifefem/assemb.hpp, lifefem/bdf.hpp,
	lifefem/elemOper.cpp, lifefem/elemOper.hpp, lifefem/meshMotion.hpp,
	lifefem/sobolevNorms.hpp, lifefilters/ensight7Writer.hpp,
	lifefilters/mesh_util.hpp, lifesolver/Makefile.am,
	lifesolver/NavierStokesAleHandler.hpp,
	lifesolver/NavierStokesAleSolverPC.hpp,
	lifesolver/NavierStokesHandler.hpp,
	lifesolver/NavierStokesSolverPC.hpp,
	lifesolver/VenantKirchhofSolver.hpp,
	lifesolver/convDiffReactSolverPC.hpp, lifesolver/darcyHandler.hpp,
	lifesolver/darcySolver.cpp, lifesolver/darcySolver.hpp,
	lifesolver/darcySolverBase.hpp, lifesolver/dataDarcy.hpp,
	lifesolver/exactJacobianBase.cpp, lifesolver/operFS.cpp,
	lifesolver/steklovPoincareBase.cpp, lifealg/SolverAztec.cpp,
	lifealg/SolverPETSC.cpp, lifealg/SolverPETSC.hpp,
	lifealg/algebraic_facto.hpp, lifealg/generalizedAitken.hpp,
	lifealg/newton.hpp, lifealg/nonLinRichardson.hpp,
	lifealg/vectorNorms.cpp, lifealg/vectorNorms.hpp,
	lifearray/elemMat.hpp, lifearray/elemVec.hpp,
	lifearray/sparseArray.cpp, lifearray/sparseArray.hpp,
	lifearray/tab.hpp, lifearray/vecUnknown.hpp:

	too many changes to remember. Here is what i remember more or less

	* cleanup  ** got rid of quite a few memory leaks by using
	boost::shared_ptr  ** simplified code in a few places

	* new vector/matrices for linear algebra   ** use
	boost::numeric::ublas	** still need some work(cleanup) in tab.hpp
	and vecUnknown.hpp

	* darcy: reworked the darcy solver (more work to be done)   **
	darcy solver factory   ** now BC and diffusion definition
	externalized   ** still need to get rid of postProcessXXX()
	functions

2004-10-25 12:15  prudhomm

	* life/lifemesh/geo0D.hpp:

	make it compile with boost  1.31

2004-10-25 10:10  winkelma

	* life/lifearray/pattern.cpp:

	* reformatted to increase readability * translated comments to
	english

2004-10-25 10:09  prudhomm

	* life/debug.areas:

	added some debug areas still not finished though

2004-10-25 10:08  prudhomm

	* life/lifemesh/: geo0D.cpp, geo0D.hpp:

	cleanup use boost::array for static array class

2004-10-25 09:11  gfourestey

	* life/lifesolver/fixedPointBase.cpp:

	faulty line removed

2004-10-25 09:08  gerbeau

	* testsuite/test_fhn/: Makefile.am, data, dataFhN.cpp, dataFhN.hpp,
	fhnHandler.cpp, fhnHandler.hpp, fhnSolver.cpp, fhnSolver.hpp,
	main.cpp, testsuite.at, user_fct.cpp, user_fct.hpp,
	user_functor.cpp, user_functor.hpp:

	A Fitzhugh-Nagumo solver (action potential propagaion in the
	myocardium)

2004-10-25 08:56  gerbeau

	* testsuite/data/mesh/inria/: heart13628.mesh, heart1959.mesh:

	Two meshes of the myocardium

2004-10-25 08:02  winkelma

	* life/lifearray/pattern.hpp:

	* reformatted to increase readability * enhanced documentation
	(second part)

2004-10-25 08:00  prosi

	* testsuite/test_darcy/main.cpp:

	don't exclude ensight in postprocessing !

2004-10-25 07:58  prosi

	* testsuite/test_darcy/data-arterialwall:

	here is the data file !

2004-10-25 07:57  prosi

	* testsuite/test_darcy/: user_fct.cpp, user_fct.hpp:

	inserted functions used in BC testcase 4 (physiologically realistic
	data of the arterial wall)

2004-10-25 07:55  prosi

	* life/lifesolver/darcyHandler.hpp:

	added BC for physiologically correct conditions of the arterial
	wall: testcase 4

2004-10-25 07:53  prosi

	* testsuite/data/mesh/inria/: Makefile.am,
	flowatch-fine-0-percent.mesh, flowatch-medium-0-percent.mesh,
	piece-of-tube-wall-tetra.mesh, flowatch-short-0-percent.mesh:

	deleted flowatch geometries - they are not update and quite large
	added tetra mesh of the wall for the darcy solver :
	----------------------------------------------------------------------

2004-10-24 22:17  gfourestey

	* testsuite/test_fsi/main.cpp:

	updated FSI algorithms

2004-10-24 22:15  gfourestey

	* life/lifesolver/: NavierStokesAleHandler.hpp,
	exactJacobianBase.cpp, fixedPointBase.cpp, operFS.cpp,
	steklovPoincareBase.cpp, steklovPoincareBase.hpp:

	updated FSI algorithm

2004-10-24 08:30  gerbeau

	* life/: lifefilters/medit_wrtrs.cpp, lifealg/dataAztec.hpp:

	std added

2004-10-24 07:41  gerbeau

	* life/lifecore/: dataTransient.cpp, dataTransient.hpp:

	a few capabilities are added to allow restarted solutions (initial
	time, initial data file, etc.)

2004-10-24 07:35  gerbeau

	* life/lifealg/dataAztec.cpp:

	small bug fixed

2004-10-24 07:24  gerbeau

	* life/lifealg/: dataAztec.cpp, dataAztec.hpp:

	A function is added to allow the reusing of an already computed
	preconditionner (this can save a lot cpu time !)

2004-10-24 07:10  gerbeau

	* life/lifefilters/medit_wrtrs.cpp:

	Set high precision in solution (.bb) files (because theses files
	can be used to inititialize restarted solutions, not only for
	postprocessing)

2004-10-23 21:37  gfourestey

	* testsuite/test_fsi_dd/: data, main.cpp, operFS.cpp:

	Neumann-Neumann precond candidate release

2004-10-22 21:52  simone

	* testsuite/test_fsi_dd/operFS.cpp:

	first step to add N-N preconditionner

2004-10-22 19:49  gfourestey

	* testsuite/test_fsi_dd/: main.cpp, operFS.cpp, operFS.hpp:

	updated version on linear fluid precond

2004-10-22 16:28  winkelma

	* life/lifearray/pattern.hpp:

	* reformatted to increase readability * enhanced documentation

2004-10-22 13:19  winkelma

	* life/lifearray/: pattern.cpp, pattern.hpp:

	long live polymorphism

2004-10-22 10:36  prudhomm

	* NEWS:

	update hopefully I haven't forgotten anything

2004-10-22 09:27  prosi

	* life/lifesolver/darcySolver.hpp:

	message to a french guy here at MOX: that's SABOTAGE ;-)

2004-10-22 06:03  winkelma

	* life/lifealg/SolverPETSC.cpp:

	make it compile also with PETSc 2.2.0

2004-10-21 17:25  gfourestey

	* testsuite/test_fsi_dd/: data, main.cpp, operFS.cpp, operFS.hpp:

	linear fluid precond almost ready

2004-10-21 16:27  gfourestey

	* life/lifealg/newton.hpp:

	linesearch re-enabled

2004-10-21 16:21  winkelma

	* testsuite/test_fsi_dd/operFS.cpp:

	norm(...) called new l2norm(...), but should be maxnorm(...)

2004-10-21 16:20  winkelma

	* life/lifearray/vecUnknown.hpp,
	testsuite/lifealg/test_linearsolvers.cpp:

	renamed norm(...) to l2norm(...) to avoid ambiguities

2004-10-21 16:16  winkelma

	* life/lifefilters/readMesh3D.hpp:

	print filename in case of file handling problems

2004-10-21 12:47  vergara

	* testsuite/test_ns_cyl_flux/main_ns_flux.cpp:

	all is definied here: 1)you have to indicate the number of
	identifier of the surface on which you want to impose the flux
	condition instead of the name in setFlux; 2) you have to pass this
	identifier in solve (ex.: __ns_with_flux.solve(1);)

2004-10-21 12:44  vergara

	* life/lifesolver/NavierStokesWithFlux.hpp:

	now it is not necessary for the user to enter in the library (i.e.
	in NavierStokesWithFlux.hpp). All is definied from the main

2004-10-21 12:42  vergara

	* life/lifefem/: bcHandler.cpp, bcHandler.hpp:

	in findBC and modifyBC possibility to pass the number of identifier
	of the surface instead the name of the surface

2004-10-21 10:57  winkelma

	* life/lifealg/: SolverPETSC.cpp, SolverPETSC.hpp:

	* added method condEst() * added method iterations() * added option
	ksp_set_compute_singular_values * transformed additional options
	into logical ones (extends previous behaviour) * documented
	additional options * removed badly placed output

2004-10-21 08:29  gfourestey

	* testsuite/test_fsi_dd/testsuite.at:

	added missing file - hopefully the nightly build will work someday

2004-10-20 15:54  moura

	* testsuite/test_coupling_3d0d/: main.cpp, zeroDModelSolver.hpp:

	Small fix (a sign). Some cosmetic changes..

2004-10-20 15:48  winkelma

	* life/lifesolver/nsipterms.hpp,
	testsuite/test_ns_ipstab/ipStabilization.hpp:

	fixed but in cross product

2004-10-20 15:28  winkelma

	* life/lifealg/: SolverPETSC.cpp, SolverPETSC.hpp:

	* factored out common code of solve and solveTranspose * make sure
	_M_p is deleted in the end * renamed _tempMatrix to _M_tempMatrix *
	renamed _tempPattern to _M_tempPattern * moved all documentation
	from SolverPETSC.cpp to SolverPETSC.hpp * rewrapped

2004-10-20 14:21  gfourestey

	* testsuite/test_fsi_dd/: main.cpp, operFS.cpp, operFS.hpp:

	operators are now defined only on the F/S interface

2004-10-20 13:14  winkelma

	* life/lifealg/SolverPETSC.cpp:

	do not show solver info twice

2004-10-20 07:58  gfourestey

	* testsuite/test_fsi_newton/: operFS.cpp, operFS.hpp:

	fixed mix-up in calling sequence

2004-10-19 20:54  simone

	* life/lifealg/generalizedAitken.hpp:

	abs pour default omega <0

2004-10-19 20:50  simone

	* life/lifealg/: generalizedAitken.hpp, nonLinRichardson.hpp:

	dt=0.0001 et test sur le residu

2004-10-19 20:36  gfourestey

	* testsuite/test_fsi_dd/: main.cpp, operFS.cpp:

	DD with linear solid precond up and running at last, needs some
	tweaking though  (thanks to CW, SD and MF for their help)

2004-10-19 20:35  simone

	* testsuite/test_fsi_dd/data:

	dt=0.0001 et test sur le residulife/lifealg/

2004-10-19 20:35  gfourestey

	* life/lifesolver/VenantKirchhofSolver.hpp:

	modified Jacobian update for domain decomposition

2004-10-19 17:10  gfourestey

	* life/: lifealg/linesearch_cubic.hpp,
	lifealg/linesearch_parabolic.hpp, lifealg/newton.hpp,
	lifealg/nonLinRichardson.hpp, lifesolver/Makefile.am,
	lifesolver/VenantKirchhofSolver.hpp,
	lifesolver/exactJacobianBase.cpp, lifesolver/exactJacobianBase.hpp,
	lifesolver/fixedPointBase.cpp, lifesolver/fixedPointBase.hpp,
	lifesolver/operFS.cpp, lifesolver/operFS.hpp,
	lifesolver/steklovPoincareBase.cpp,
	lifesolver/steklovPoincareBase.hpp:

	going back to the old calling sequence for compatibility purpose
	until new array class is implemented

2004-10-19 16:57  gfourestey

	* testsuite/test_fsi_dd/: Makefile.am, main.cpp, operFS.cpp,
	ud_functions.hpp:

	update version and ud_functions.hpp added

2004-10-19 16:52  gfourestey

	* testsuite/test_fsi_dd/data:

	added missing file data

2004-10-19 16:22  gfourestey

	* testsuite/test_fsi_dd/: main.cpp, operFS.cpp, operFS.hpp,
	Makefile.am:

	readding main and operFS

2004-10-19 13:48  winkelma

	* life/lifearray/sparseArray.hpp:

	enriched and unified documentation about spy methods

2004-10-19 13:39  vergara

	* life/lifesolver/NavierStokesWithFlux.hpp:

	ok non is updated the pressure too

2004-10-19 10:37  prudhomm

	* admin/ac_check_boost.m4:

	hopefully fix the case when there is no variant ie
	libboost_signals.so

	I am leaving for Paris at the end of the afternoon for a LifeV
	meeting in Paris

2004-10-19 09:25  gfourestey

	* testsuite/test_fsi_dd/: data, testsuite.at:

	i forgot these two

2004-10-19 09:24  gfourestey

	* testsuite/test_fsi_dd/: Makefile.am, data, exactJacobianBase.cpp,
	exactJacobianBase.hpp, fixedPointBase.cpp, fixedPointBase.hpp,
	main.cpp, operFS.cpp, operFS.hpp, steklovPoincareBase.cpp,
	steklovPoincareBase.hpp, ud_functions.cpp, ud_functions.hpp:

	removed multiple defined FSI test

2004-10-19 08:02  vergara

	* testsuite/test_ns_cyl_flux/: main_ns_flux.cpp, ud_functions.hpp:

	posibility to impose cosinusoidal and physiological flux. Sorry for
	the moment thr pressure is not updated

2004-10-18 17:17  vergara

	* life/lifesolver/NavierStokesWithFlux.hpp:

	Here is the algorithm for one imposed flux problem

2004-10-18 17:16  vergara

	* testsuite/test_ns_cyl_flux/: main_ns_flux.cpp, ud_functions.hpp:

	Fast GMRes alghoritm for one imposed flux problem. Now the
	alghoritm is in NavierStokesWithFlux. In main I set the flux that
	is definied in ud_functions

2004-10-18 14:53  gfourestey

	* life/lifesolver/: exactJacobianBase.cpp, exactJacobianBase.hpp:

	added Miguel Fernandez's exact jacobian formulation

2004-10-18 12:58  gfourestey

	* testsuite/test_fsi_dd/: steklovPoincareBase.cpp,
	steklovPoincareBase.hpp:

	rename solvePrec by solveJac for consistancy reasons

2004-10-18 12:54  gfourestey

	* testsuite/test_fsi_dd/operFS.hpp:

	rename solvePrec by solveJac for consistancy reasons

2004-10-18 12:46  gfourestey

	* life/lifesolver/operFS.hpp:

	rename solvePrec by solveJac for consistancy reasons

2004-10-18 12:43  gfourestey

	* life/lifesolver/: steklovPoincareBase.cpp,
	steklovPoincareBase.hpp:

	rename solvePrec by solveJac for consistancy reasons

2004-10-18 12:30  vmartin

	* doc/tex/lifeoop.bib:

	book very usefull to get rapidly into the c++.	starts directly
	from the use of the STL

2004-10-18 12:28  gfourestey

	* testsuite/test_fsi_dd/: fixedPointBase.cpp, fixedPointBase.hpp,
	steklovPoincareBase.cpp, steklovPoincareBase.hpp:

	added new fsi methods

2004-10-18 12:24  gfourestey

	* life/lifealg/: generalizedAitken.hpp, linesearch_cubic.hpp,
	linesearch_parabolic.hpp, newton.hpp, nonLinRichardson.hpp:

	general update

2004-10-18 11:48  gfourestey

	* life/lifealg/: linesearch_cubic.hpp, linesearch_parabolic.hpp:

	modified calling sequence

2004-10-18 09:49  gfourestey

	* testsuite/Makefile.am:

	bug fix

2004-10-18 09:40  gfourestey

	* testsuite/test_fsi_newton/: operFS.cpp, operFS.hpp:

	updated operFS to match new solid solver subroutines

2004-10-18 09:35  prudhomm

	* doc/tex/lifeoop.bib:

	typo

2004-10-18 09:30  prudhomm

	* doc/tex/: lifeoop.bib, oop.bib:

	oop -> lifeoop

2004-10-18 09:28  prudhomm

	* doc/tex/: lifealg.bib, lifesolver.bib, lifev.bib, oop.bib:

	split biblio files added Design Patterns from Gamma et al. to
	oop.bib

2004-10-18 09:26  gfourestey

	* life/lifesolver/steklovPoincareBase.cpp,
	testsuite/test_fsi_dd/exactJacobianBase.cpp,
	testsuite/test_fsi_dd/operFS.cpp, testsuite/test_fsi_dd/operFS.hpp:

	bug fix

2004-10-18 09:18  gfourestey

	* life/: lifealg/newton.hpp, lifesolver/fixedPointBase.cpp,
	lifesolver/operFS.hpp, lifesolver/steklovPoincareBase.cpp:

	seting up the exact calling sequence

2004-10-18 09:15  gfourestey

	* life/lifesolver/VenantKirchhofSolver.hpp:

	residual variable is now at the end of the calling sequence

2004-10-18 08:46  gfourestey

	* testsuite/test_fsi_dd/: Makefile.am, data, exactJacobianBase.cpp,
	exactJacobianBase.hpp, main.cpp, operFS.cpp, operFS.hpp:

	added Miguel's exact jacobian method for FSI

2004-10-18 07:57  prudhomm

	* life/lifefem/: bcCond.hpp, bcFunction.cpp, bcFunction.hpp,
	bcHandler.hpp, bcVector.hpp:

	Miguel was the original author

2004-10-18 07:55  prudhomm

	* configure.in.in:

	fix compilation:added liblifesolver.la to $(life_libs)

2004-10-16 21:06  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	a few bugs fixed before complete removal

2004-10-15 21:53  gfourestey

	* life/Makefile.am:

	filters must be compiled before solvers

2004-10-15 21:41  gfourestey

	* testsuite/test_fsi/Makefile.am:

	output file is now test_fsi

2004-10-15 21:40  gfourestey

	* life/lifesolver/fixedPointBase.cpp,
	life/lifesolver/fixedPointBase.hpp, life/lifesolver/operFS.hpp,
	life/lifesolver/steklovPoincareBase.cpp,
	life/lifesolver/steklovPoincareBase.hpp,
	testsuite/test_fsi/main.cpp:

	BC are now set up in main.cpp

2004-10-15 20:15  gfourestey

	* life/lifesolver/Makefile.am:

	added lifefilters in include files

2004-10-15 18:59  gfourestey

	* testsuite/: Makefile.am, testsuite.at:

	added test_fsi test case

2004-10-15 18:59  prudhomm

	* testsuite/: Makefile.am, test_dg/.cvsignore, test_fsi/.cvsignore:

	ignore some automatically generated files

	added test_fsi to SUBDIRS

	Gilles it works for me here

2004-10-15 17:31  gfourestey

	* testsuite/test_fsi/main.cpp:

	fluid and solid are now intialized in main.cpp

2004-10-15 17:28  gfourestey

	* life/lifesolver/: Makefile.am, operFS.cpp, operFS.hpp:

	fluid and structure must be initialized in main.cpp

2004-10-15 17:21  gfourestey

	* life/lifesolver/Makefile.am:

	updated file

2004-10-15 17:20  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	output variable is now in the calling sequence

2004-10-15 17:19  gfourestey

	* life/lifealg/Makefile.am:

	removed unexisting files

2004-10-15 16:54  gfourestey

	* life/lifealg/Makefile.am:

	added fsi solvers

2004-10-15 16:45  gfourestey

	* testsuite/test_fsi/: Makefile.am, data, main.cpp, testsuite.at,
	ud_functions.cpp, ud_functions.hpp:

	one test case for all fluid/structure interaction methods

2004-10-15 16:39  gfourestey

	* life/lifesolver/: ElasticStructureHandler.hpp,
	VenantKirchhofSolver.hpp, fixedPointBase.cpp, fixedPointBase.hpp,
	operFS.cpp, operFS.hpp, steklovPoincareBase.cpp,
	steklovPoincareBase.hpp:

	added new solvers for fluid/structure interactions.
	test_fsi_newton, test_fsi_dd and test_fsi_picard will soon be
	united into one test case

2004-10-15 15:11  winkelma

	* life/lifesolver/nsipterms.hpp,
	testsuite/test_ns_ipstab/ipStabilization.hpp:

	* added preprocessor flags for variants of stabilization choices *
	added timing output

2004-10-15 15:09  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	* choose solver (Aztec/Petsc) from preprocessor flag * assume more
	general case for ip stabilization (all terms reassembled) * one
	pressure node is fixed again

2004-10-15 06:41  ddipietro

	* life/lifefem/dofDG.hpp:

	lcount needed initialization.

2004-10-14 17:08  gfourestey

	* testsuite/test_fsi_dd/: Makefile.am, data, main.cpp, operFS.cpp,
	operFS.hpp, ud_functions.cpp, ud_functions.hpp:

	first step in FSI abstraction

2004-10-14 16:34  prudhomm

	* life/lifefem/: bcCond.cpp, bcCond.hpp, bcFunction.cpp,
	bcFunction.hpp, bcVector.cpp, bcVector.hpp:

	YEAAAAAAAAAAAAAAAAAH

	factory clone for BCVector too !! boost is way to cool

	it fixes Gilles bug when abstracting FSI it fixes huge issues with
	pointer ownership

2004-10-14 14:56  ddipietro

	* testsuite/test_dg/: main.cpp, main.hpp, main.old:

	main.hpp also includes an element-wise filter to opendx, which was
	parametrized to be used also with continuous-FEM (to be checked).

2004-10-14 14:42  ddipietro

	* life/lifefem/currentFEDG.hpp:

	Modified update member.

2004-10-14 10:15  prudhomm

	* admin/ac_check_boost.m4:

	final cleanup

2004-10-14 10:07  prudhomm

	* admin/ac_check_boost.m4:

	on debian you can have a fine grain control on boost install and
	not all boost libraries have to be installed actually
	AC_CHECK_BOOST checks for the standard header files only and for
	not libraries at all so if regex lib is not found then fallback to
	/usr/lib and don't show this very ugly NO which is actually
	misleading

2004-10-14 09:39  prudhomm

	* admin/ac_check_boost.m4:

	unbreak debian/boost, libboost-regex may not be installed on the
	system

	why did you have to put a special case for MOX isn't --with-boost
	working properly ?

2004-10-14 09:04  prudhomm

	* configure.in.bot:

	now show an error if

	 * boost is not installed
	 * boost::signals is not installed (but boost is installed)

2004-10-14 09:02  prudhomm

	* admin/ac_check_boost.m4:

	now check properly for boost library variants if the debug library
	variant is available in debug mode(aka --enable-debug) then it is
	used !

2004-10-13 21:09  prudhomm

	* testsuite/test_ns_cyl_flux/main_ns_flux.cpp:

	minor fix

2004-10-13 18:31  prudhomm

	* admin/ac_check_boost.m4:

	minot fix 1.31 is the default version

2004-10-13 18:16  prudhomm

	* admin/ac_check_boost.m4:

	revert some of the last changes from Vincent (I keep the MOX stuff
	there) AC_LANG_SAVE and AC_LANG_CPLUSPLUS must come before the
	header checks

2004-10-13 17:11  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	now normMuk is the norm of muk

2004-10-13 17:10  gfourestey

	* testsuite/test_fsi_dd/main.cpp:

	added Jacobian solver options for Aztec

2004-10-13 17:09  gfourestey

	* testsuite/test_fsi_dd/operFS.cpp,
	testsuite/test_fsi_dd/operFS.hpp,
	life/lifesolver/NavierStokesAleSolverPC.hpp:

	added 2 more preconditionner for nonLinearRichardson

2004-10-13 17:06  gfourestey

	* testsuite/test_fsi_dd/data:

	added Jacobian solver options for Aztec

2004-10-13 16:25  vmartin

	* admin/ac_check_boost.m4:

	Added testing for MOX Software Repository....

2004-10-13 15:57  prudhomm

	* admin/ac_check_boost.m4, life/debug.areas,
	life/lifefem/bcCond.cpp, life/lifefem/bcCond.hpp,
	life/lifefem/bcHandler.cpp, life/lifefem/bcHandler.hpp,
	life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/NavierStokesWithFlux.hpp,
	testsuite/test_ns_cyl_flux/Makefile.am,
	testsuite/test_ns_cyl_flux/main_ns_flux.cpp:

	added BCBase::setBCFunction() and BCBase::setBCVector() to set new
	BC data and/or switch between the two added NavierStokesWithFlux
	for Christian V.  experiment with observer pattern and actually it
	is very powerful stuff added new test for NavierStokesWithFlux in
	testsuite/test_ns_cyl_flux/

	anyway all NS tests should move to test_ns or test_cfd soon
	likewise for all other related tests: they should move in their own
	category (mass transport,multiscale, fsi)...

2004-10-13 14:22  winkelma

	* life/lifefilters/readMesh3D.hpp:

	* don't normally display values that are possibly bogus   note that
	the values are still bogus * display whether reading inria or
	mesh++ mesh

2004-10-13 14:03  prudhomm

	* life/: lifesolver/NavierStokesSolverPC.hpp, lifefem/bcCond.cpp,
	lifefem/bcCond.hpp, lifefem/bcFunction.cpp, lifefem/bcFunction.hpp,
	lifefem/bcHandler.cpp, lifefem/bcHandler.hpp,
	lifemesh/identifier.hpp:

	Simplified A LOT boundary conditions please study the clone factory
	to see what I have done also I use boost::shared_ptr<> to ensure
	that the ressources are destroyed at the proper time.

	added modifyBC() (for NavierStokesWithFlux) but not finished yet

2004-10-13 12:41  prudhomm

	* configure.in.in, admin/ac_check_boost.m4:

	added check for boost::signals to have an implementation of the
	observer pattern next Commit of NavierStokesWithFlux will show how
	to use the observer pattern

2004-10-13 11:52  prudhomm

	* life/lifecore/util_string.cpp:

	cosmetics fixes

2004-10-13 11:52  prudhomm

	* Templates/Makefile.am.tpl:

	Makefile.am template

2004-10-13 10:59  vmartin

	* life/lifesolver/darcySolver.hpp:

	no analytical solution by default

2004-10-13 10:49  vmartin

	* NEWS:

	darcy in +

2004-10-13 10:26  ddipietro

	* life/lifearray/pattern.hpp:

	Some pollution: I need these overloading to commit a first release
	of DG-FEM test, but they will be cancelled out when the new version
	of pattern (or whatever it will be) is ready (see C. Winkelmann's
	mail on life-dev mailing list).

2004-10-13 10:18  prudhomm

	* life/lifecore/: typeInfo.cpp, typeInfo.hpp:

	added TypeInfo class for clone factories It is used to retrieve the
	exact type of a class when using class hierarchies

2004-10-13 10:17  prudhomm

	* NEWS, life/lifecore/Makefile.am, life/lifecore/factory.hpp,
	testsuite/lifecore/Makefile.am,
	testsuite/lifecore/test_factory.cpp:

	lifecore changes

	* added Cloning factory aka abstract factory   it will be used in
	the boundary conditions classes *
	testsuite/lifecore/test_factory.cpp has a test for clone factories
	 now * test_factory is now enabled

	this is the first COMMIT that makes boost:: a requirement !

	factories rely on boost::function<> for functors.

2004-10-13 09:56  winkelma

	* life/lifefem/currentBFDG.hpp:

	BC_Handler has been renamed to BCHandler

2004-10-13 09:49  prudhomm

	* testsuite/Makefile.am:

	now Vincent is happy ! dependencies are not ok

2004-10-13 09:40  vmartin

	* testsuite/: Makefile.am, testsuite.at:

	no more darcytetra testsuite.

2004-10-13 09:39  ddipietro

	* life/lifefem/refFEDG.hpp:

	Some (minor) modifications.

2004-10-13 09:37  ddipietro

	* life/lifefem/: currentBFDG.cpp, currentBFDG.hpp:

	Some minor modifications were necessary for (solved) run-time
	problems.

2004-10-13 09:33  ddipietro

	* life/lifefem/assemb.hpp:

	Added some assembly functions for DG-FEM.

2004-10-13 09:30  vmartin

	* testsuite/test_darcy/datatetra:

	new data file for tetra meshes

2004-10-13 09:29  vmartin

	* testsuite/test_darcy/: Makefile.am, darcyHandler.cpp,
	darcyHandler.hpp, darcySolver.cpp, darcySolver.hpp,
	darcySolver_post.cpp, data, dataDarcy.cpp, dataDarcy.hpp, main.cpp,
	testsuite.at:

	templated darcy files and moved them into lifesolver two tests are
	performed : 1 for tetra, 1 for hexa meshes.

	BEWARE : data files are modified!! In particular they must contain
	the entry [darcy/discretization] mesh_faces   = all	 #
	OBLIGATORY! we need all faces!

	to construct the face-volume lists.  (new "feature" linked to the
	use of DataMesh)

2004-10-13 09:22  vmartin

	* life/lifefem/sobolevNorms.hpp:

	removed a warning (int <-> UInt)

2004-10-13 09:21  vmartin

	* life/lifesolver/: Makefile.am, darcyHandler.hpp, darcySolver.hpp,
	dataDarcy.hpp:

	Templated classes for darcy solver. Works for both tetra and hexa
	case.

2004-10-13 09:16  ddipietro

	* life/lifefem/: bcHandler.cpp, bcHandler.hpp:

	I added a couple of members that are useful for weak imposition of
	BCs.  I will commit a new version of assemb.hpp which should be
	explanatory of usefulness and usage.

2004-10-13 07:34  prudhomm

	* admin/ac_check_boost.m4:

	added --with-boost-version to be able to use different version of
	boost:: default version is now 1.31 (which is the latest release)
	1.32 will come in the next few days

2004-10-12 15:48  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	replaced normResidual by normMuk

2004-10-12 15:28  winkelma

	* life/lifearray/connectivity.hpp:

	forgot copyright header

2004-10-12 15:21  winkelma

	* life/lifearray/connectivity.hpp:

	first draft of a Connectivity base class for makeing the storage
	scheme and the sparsity pattern independent. see also file
	REDESIGN.txt and discussion on lifev-dev@webmail.mate.polimi.it

2004-10-12 14:26  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	removed useless piece of code

2004-10-12 13:06  prosi

	* testsuite/test_mass_coupling/main.cpp:

	uups - never commit to early (little bug in main file)

2004-10-12 10:49  prosi

	* testsuite/test_mass_coupling/main.cpp:

	modified test to use of mixte coefficient in vectorial form

2004-10-12 10:47  prosi

	* life/lifefem/: bcCond.cpp, bcCond.hpp, bcManage.hpp,
	bcVector.cpp, bcVector.hpp:

	added mixte coefficient in vectorial form

2004-10-12 07:25  prudhomm

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_onedmodel/oneDModelHandler.hpp,
	life/lifefem/Makefile.am, life/lifefem/assemb.hpp,
	life/lifefem/bcCond.cpp, life/lifefem/bcCond.hpp,
	life/lifefem/bcFunction.cpp, life/lifefem/bcFunction.hpp,
	life/lifefem/bcHandler.cpp, life/lifefem/bcHandler.hpp,
	life/lifefem/bcManage.hpp, life/lifefem/currentBFDG.hpp,
	life/lifefem/elemOper_ext.hpp,
	life/lifesolver/ElasticStructureHandler.hpp,
	life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/NavierStokesSolverPC.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/convDiffReactHandler.hpp,
	life/lifesolver/convDiffReactSolverPC.hpp,
	testsuite/test_darcy/darcyHandler.hpp,
	testsuite/test_fsi_dd/operFS.hpp:

	BCHandler has its own files .hpp and .cpp bcHandler.hpp should be
	used instead of bcCond.hpp moved bcFunction into its own files like
	bcVector

2004-10-11 20:03  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	modified stop criterion

2004-10-11 19:11  gfourestey

	* life/lifesolver/VenantKirchhofSolver.hpp:

	residual is now computed correctly

2004-10-11 16:02  winkelma

	* testsuite/test_ns_ipstab/main.cpp:

	* use new initialization for entire state vector (u-p) * renamed
	variables according to coding standard * trigger error calculation
	from outside

2004-10-11 16:00  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	* put initialization in separate function * do not calculate errors
	any more, user may use new error functions   from
	NavierStokesHandler instead * do not set any artificial pressure
	boundary condition for matrix definiteness

2004-10-11 15:51  winkelma

	* life/lifesolver/NavierStokesHandler.hpp:

	* use available function typedef instead of template * get time
	from argument list instead of (inexistent) member in error
	functions

2004-10-11 15:49  prudhomm

	* life/: lifefem/bcCond.cpp, lifefem/bcCond.hpp,
	lifefem/bcManage.hpp, lifemesh/identifier.cpp,
	lifemesh/identifier.hpp:

	clean ups continued (removed _ in names) be careful boost will
	become mandatory RSN !

2004-10-11 15:37  prudhomm

	* testsuite/Makefile.am:

	do the link only when top_srcdir  != top_builddir

2004-10-11 15:34  winkelma

	* life/lifesolver/NavierStokesHandler.hpp:

	added functions pErrorL2 and uErrorL2

2004-10-11 15:30  prudhomm

	* life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/NavierStokesSolverPC.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/convDiffReactSolverPC.hpp,
	life/lifesolver/nsip.hpp, testsuite/test_bdf/main.cpp,
	testsuite/test_darcy/darcySolver.cpp,
	testsuite/test_essentialbc/main.cpp,
	testsuite/test_fsi_dd/operFS.cpp,
	testsuite/test_fsi_newton/operFS.cpp,
	testsuite/test_laplacian/main.cpp, testsuite/test_mixte/main.cpp,
	testsuite/test_naturalbc/main.cpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_p2/main.cpp, testsuite/test_postproc/main.cpp,
	testsuite/test_q1/main.cpp, life/lifefem/Makefile.am,
	life/lifefem/bcCond.cpp, life/lifefem/bcManage.hpp,
	life/lifefem/bc_manage.hpp, life/lifefem/dofInterfaceHandler.hpp,
	life/lifefem/meshMotion.hpp, life/lifefem/values.hpp:

	bc_manage --> bcManage

2004-10-11 15:29  prudhomm

	* testsuite/Makefile.am:

	grant Vincent wish regarding the link for testsuite in
	top_builddir/testsuite/

2004-10-11 15:14  winkelma

	* life/lifefem/sobolevNorms.hpp:

	added function elem_integral_diff which allows for easy computation
	of mean values useful for fields defined up to a constant

2004-10-11 14:24  prudhomm

	* life/lifesolver/: Makefile.am:

	no multiscale for now ;)

2004-10-11 14:22  prudhomm

	* NEWS:

	revamped the BC classes, see previous commit still unfinished (need
	interface for modifyBC())

2004-10-11 14:19  prudhomm

	* testsuite/test_q1/main.cpp, life/lifesolver/nsip.hpp,
	testsuite/test_fsi_newton/main.cpp,
	testsuite/test_fsi_newton/operFS.cpp,
	testsuite/test_fsi_newton/operFS.hpp,
	testsuite/test_fsi_picard/main.cpp,
	testsuite/test_laplacian/main.cpp,
	testsuite/test_linearelasticity/main.cpp,
	testsuite/test_mass_coupling/main.cpp,
	testsuite/test_masstransport/main.cpp,
	testsuite/test_mixte/main.cpp, testsuite/test_naturalbc/main.cpp,
	testsuite/test_ns_bcvec/main.cpp, testsuite/test_ns_bdf/main.cpp,
	testsuite/test_ns_cyl/main.cpp,
	testsuite/test_ns_cyl_flux/.cvsignore,
	testsuite/test_ns_cyl_flux/main.cpp,
	testsuite/test_ns_cyl_flux/ud_functions.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/main.cpp,
	testsuite/test_ns_sstress/main.cpp,
	testsuite/test_onedmodel/oneDModelHandler.hpp,
	testsuite/test_p2/main.cpp, testsuite/test_postproc/main.cpp,
	life/lifefem/assemb.hpp, life/lifefem/bcCond.cpp,
	life/lifefem/bcCond.hpp, life/lifefem/bcVector.cpp,
	life/lifefem/bcVector.hpp, life/lifefem/bc_manage.hpp,
	life/lifefem/bdf.cpp, life/lifefem/bdf.hpp,
	life/lifefem/currentBFDG.hpp, life/lifefem/dofInterfaceHandler.cpp,
	life/lifefem/dofInterfaceHandler.hpp, life/lifefem/meshMotion.hpp,
	life/lifesolver/ElasticStructureHandler.hpp,
	life/lifesolver/Makefile.am,
	life/lifesolver/NavierStokesAleHandler.hpp,
	life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/NavierStokesSolverPC.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/convDiffReactHandler.hpp,
	life/lifesolver/convDiffReactSolverPC.hpp,
	testsuite/test_bdf/main.cpp,
	testsuite/test_coupling_3d0d/.cvsignore,
	testsuite/test_coupling_3d0d/main.cpp,
	testsuite/test_darcy/darcyHandler.hpp,
	testsuite/test_essentialbc/main.cpp,
	testsuite/test_fsi_dd/main.cpp, testsuite/test_fsi_dd/operFS.cpp,
	testsuite/test_fsi_dd/operFS.hpp:

	work on boundary condition and code sanitization  * code
	sanitization  * removed inconsistencies in naming  * don't access
	protected members in subclasses like in operator=()    or others,
	rather provide the function that does that in the class    where
	they belong

	access to protected data member should be done only when it is a
	true extension of the super class that the super class does not
	provide a mechanism(eg interface) for what is being done

2004-10-11 13:06  gfourestey

	* testsuite/test_fsi_dd/: main.cpp, operFS.cpp:

	Steklov-Poincare method almost working: first iteration converges
	towards good results but second iteration fails

2004-10-11 10:39  vergara

	* testsuite/data/mesh/inria/stenosi.mesh:

	 stenosis mesh

2004-10-11 10:38  vergara

	* testsuite/test_ns_cyl_flux/: data, ud_functions.hpp:

	see main.cpp

2004-10-11 10:38  vergara

	* testsuite/test_ns_cyl_flux/main.cpp:

	Fast version of gmres alghoritm for the imposed flux problem

2004-10-11 10:37  vergara

	* life/lifesolver/NavierStokesSolverPC.hpp:

	Return to the old version of NavierStokesSolver.hpp

2004-10-10 21:42  gfourestey

	* life/lifealg/nonLinRichardson.hpp,
	testsuite/test_fsi_dd/main.cpp, testsuite/test_fsi_dd/operFS.cpp,
	testsuite/test_fsi_dd/operFS.hpp:

	functions now return vectors instead of void

2004-10-10 21:39  gfourestey

	* life/lifesolver/VenantKirchhofSolver.hpp:

	function solveJac now supports custom BC

2004-10-08 17:48  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	added several residual computation on FSI

2004-10-08 16:34  gfourestey

	* testsuite/test_fsi_dd/main.cpp:

	BC definition modification for domain decomposition resolution

2004-10-08 16:30  gfourestey

	* life/lifealg/newton.hpp:

	jacobian is updated even if sol is null

2004-10-08 16:29  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	added precond solver call

2004-10-08 15:26  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/data:

	read stabilization parameters from data file

2004-10-08 15:25  winkelma

	* life/lifesolver/nsipterms.hpp,
	testsuite/test_ns_ipstab/ipStabilization.hpp:

	small corrections in still commented part

2004-10-08 12:56  winkelma

	* life/lifesolver/nsip.hpp, life/lifesolver/nsipterms.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/ipStabilization.hpp:

	Moved IP stabilization stuff to new file ipStabilization.hpp.  This
	may be a first step towards a general stabilization interface for
	the Navier-Stokes solver(s)

2004-10-08 12:37  winkelma

	* life/lifesolver/dataNavierStokes.hpp:

	Do not return variables that do not exist.

2004-10-08 10:50  winkelma

	* testsuite/test_ns_ipstab/data:

	* added some options * reduced aztec output * reformatted

2004-10-08 10:47  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	* write initial states for bdf to file for debugging * reformatted
	output nicely * renamed some (all?) one character variables *
	change from #include "..." to #include <...> * some code
	reformatting

2004-10-08 10:42  winkelma

	* testsuite/test_ns_ipstab/main.cpp:

	* read picard parameters from data file * do not write initial
	state to file from main.cpp any more * change from #include "..."
	to #include <...> * reduce output * get a little closer to coding
	standard

2004-10-07 17:14  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	added (buggy) linear structure operator computation

2004-10-07 17:13  gfourestey

	* testsuite/test_fsi_dd/main.cpp:

	added dirichlet BC condition for the structure

2004-10-07 17:12  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	adding precond computation

2004-10-07 14:08  vergara

	* testsuite/: Makefile.am, testsuite.at:

	add test_ns_cyl_flux

2004-10-07 14:07  vergara

	* testsuite/test_ns_cyl_flux/: Makefile.am, data, main.cpp,
	testsuite.at, ud_functions.hpp:

	a new test for flux BC with gmres alghoritm

2004-10-07 13:54  vergara

	* life/lifesolver/NavierStokesSolverPC.hpp:

	new members "timeAdvance" and "iterate" to solve the flux boundary
	condition problem with gmres alghoritm

2004-10-07 12:58  winkelma

	* life/lifefem/bdf.cpp:

	nicer output

2004-10-07 12:57  winkelma

	* life/lifefilters/readMesh3D.hpp:

	nicely aligned output

2004-10-07 10:18  winkelma

	* life/lifefem/: bdf.cpp, bdf.hpp:

	* make functions which do not change the class const * let unk()
	return a const& in order to save copying time and memory

2004-10-07 09:40  winkelma

	* life/lifealg/SolverAztec.cpp:

	no unnecessary output

2004-10-06 21:02  gfourestey

	* testsuite/test_fsi_dd/main.cpp:

	identation modification and essential BC added for linear fluid and
	solid operators

2004-10-06 21:00  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	residual computation on the interface (thanx to CW for his help)

2004-10-06 19:03  prudhomm

	* AUTHORS, NEWS, configure.in.in:

	bump up version to 0.5, added DA Di Pietro in AUTHORS updated NEWS

2004-10-06 17:25  winkelma

	* life/lifemesh/dataMesh.hpp:

	added option "verbose" to data file which defaults to 0 = false
	mesh reading is now less verbose but can be turned more verbose by
	adding verbose = 1 to the mesh (discretization) section of the data
	file

2004-10-06 17:21  winkelma

	* life/lifefilters/readMesh3D.hpp:

	* added verbosity flag to readMppFile and readINRIAMeshFile *
	reduced default verbosity of above functions

2004-10-06 16:44  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	removed unnecessary arrays

2004-10-06 16:43  gfourestey

	* life/: lifesolver/NavierStokesAleHandler.hpp,
	lifesolver/NavierStokesAleSolverPC.hpp,
	lifesolver/NavierStokesHandler.hpp,
	lifesolver/VenantKirchhofSolver.hpp, lifefem/bcCond.hpp,
	lifefem/bcVector.cpp, lifefem/bcVector.hpp,
	lifefem/dofInterface3Dto3D.hpp, lifefem/dofInterfaceBase.hpp,
	lifefem/meshMotion.hpp:

	added FS interface node peek

2004-10-06 15:17  moura

	* testsuite/: Makefile.am, testsuite.at:

	New test for coupling 3D-0D.

2004-10-06 15:16  moura

	* testsuite/test_coupling_3d0d/: Makefile.am, data, testsuite.at,
	ud_functions.hpp, zeroDModelSolver.hpp:

	New test for the coupling 3D-0D (the 0D model is still very
	naive...).

2004-10-06 15:13  moura

	* testsuite/test_coupling_3d0d/main.cpp:

	Test for the coupling 3D-0D (non compliant).

2004-10-06 14:23  ddipietro

	* life/lifefem/Makefile.am:

	Ooops, I had forgotten to commit the update
	/life/lifefem/Makefile.am...

2004-10-06 10:36  ddipietro

	* life/lifefem/assemb.hpp:

	Added features for discontinuous finite element matrix assembling.

2004-10-06 09:41  ddipietro

	* life/lifefem/elemOper_ext.hpp:

	Added features: some operators for discontinuous finite elements.

2004-10-06 09:40  ddipietro

	* life/lifefem/: dofByFace.cpp, dofByFace.hpp:

	Degree of freedom grouped by face. Useful for boundary contribution
	terms in discontinous finite elements.

2004-10-06 09:37  ddipietro

	* life/lifefem/: refFEDG.cpp, refFEDG.hpp:

	Reference finite element class for discontinuous finite elements.

2004-10-06 09:36  ddipietro

	* life/lifefem/: geoMapDG.cpp, geoMapDG.hpp:

	Class for geometric mapping of discontinuous finite elements
	(includes the mapping of faces onto element).

2004-10-06 09:35  ddipietro

	* life/lifefem/: dofDG.cpp, dofDG.hpp:

	Degree of freedom class for discontinuos finite elements.

2004-10-06 09:33  ddipietro

	* life/lifefem/: currentBFDG.cpp, currentBFDG.hpp, currentBdDG.cpp,
	currentBdDG.hpp, currentFEDG.cpp, currentFEDG.hpp, currentIFDG.cpp,
	currentIFDG.hpp:

	Current finite element, boundary element, internal face, boundary
	face for discontinuous finite elements.

2004-10-06 09:31  ddipietro

	* life/lifefem/: refEleDG.cpp, refEleDG.hpp:

	Reference element class for discontinuous finite elements.

2004-10-06 08:14  winkelma

	* testsuite/test_ns_ipstab/data:

	steady by default

2004-10-06 07:11  winkelma

	* life/lifearray/Makefile.am:

	vecUnknown.cpp is a source file, not a header

2004-10-06 07:07  winkelma

	* life/lifearray/dummy.cpp:

	not needed really...

2004-10-06 04:30  prudhomm

	* NEWS, configure.in.in:

	bump up the release to 0.4.1

2004-10-06 04:26  prudhomm

	* admin/ac_check_umfpack.m4:

	backported to 0.4 compilation fix when umfpack is not installed

2004-10-06 04:18  prudhomm

	* admin/ac_check_umfpack.m4:

	fix compilation

	ac_check_umfpack was not handling well the case if umfpack is not
	installed

2004-10-05 15:41  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/data, testsuite/test_ns_ipstab/main.cpp,
	testsuite/test_ns_ipstab/ud_functions.hpp:

	* first version of time dependent solver: working in some but not
	all cases   (aka buggy) * source reformated and adapted to coding
	standard

2004-10-05 15:17  winkelma

	* life/lifefem/bdf.hpp:

	bug in documentation fixed

2004-10-05 14:28  prudhomm

	* Makefile.am, configure.in.in:

	GCC 3.4 is not supported yet so better not look for it :(

2004-10-05 14:00  prudhomm

	* Makefile.am, doc/manual/Makefile.am, testsuite/Makefile.am,
	testsuite/test_onedmodel/testsuite.at:

	fixed make distcheck before 0.4 final release

2004-10-05 13:41  simone

	* testsuite/test_fsi_dd/operFS.cpp:

	one small error where we are not yet working, one remark correction
	and changed a remark style

2004-10-05 13:30  prudhomm

	* NEWS:

	a tad more readable perhaps

2004-10-05 13:22  prudhomm

	* life/lifealg/: SolverUMFPACK.cpp, SolverUMFPACK.hpp:

	initial version of the UMFPACK/direct solver for sparse
	(un)symmetric systems not yet finished though.	it relies on boost
	but it is not mandatory

	the next version of LifeV will have boost as mandatory

2004-10-05 13:10  prudhomm

	* NEWS:

	updated NEWS with the new stuff in

2004-10-05 13:08  prudhomm

	* life/: debug.areas, ldebug.areas:

	renamed ldebug.areas to debug.areas

2004-10-05 13:07  prudhomm

	* life/ldebug.areas, life/lifecore/factory.hpp,
	testsuite/lifecore/test_factory.cpp:

	added factory pattern implementation (depends on boost but it is
	never used anywhere in LifeV)

2004-10-05 13:01  prudhomm

	* admin/ac_check_umfpack.m4:

	update umfpack checks

2004-10-05 13:01  prudhomm

	* configure.in.in:

	check for boost and check for umfpack, if you don't have them
	that's ok too ;)

2004-10-05 12:59  prudhomm

	* testsuite/lifecore/test_debug.cpp:

	LDebug->Debug

2004-10-05 12:58  prudhomm

	* life/lifecore/Makefile.am:

	update Makefile.am

2004-10-05 12:57  prudhomm

	* life/lifecore/: debug.cpp, debug.hpp:

	renamed LDebug to Debug

2004-10-05 12:31  prudhomm

	* life/: lifefem/sobolevNorms.hpp, lifefem/staticBdFE.cpp,
	lifefem/staticBdFE.hpp, lifefem/v2elemVec.cpp,
	lifefem/v2elemVec.hpp, lifefem/values.hpp,
	lifefilters/ensight7Writer.hpp, lifefilters/gmsh_wrtrs.hpp,
	lifefilters/gmv_wrtrs.hpp, lifefilters/medit_wrtrs.cpp,
	lifefilters/medit_wrtrs.hpp, lifefilters/mesh_util.hpp,
	lifefilters/openDX_wrtrs.cpp, lifefilters/openDX_wrtrs.hpp,
	lifefilters/readMesh2D.hpp, lifefilters/readMesh3D.cpp,
	lifefilters/readMesh3D.hpp, lifefilters/vtk_wrtrs.cpp,
	lifefilters/vtk_wrtrs.hpp, lifemesh/dataMesh.hpp,
	lifemesh/geo0D.cpp, lifemesh/geo0D.hpp, lifemesh/geoElement.hpp,
	lifemesh/geoND.hpp, lifemesh/identifier.cpp,
	lifemesh/identifier.hpp, lifemesh/markers.hpp,
	lifemesh/markers_base.cpp, lifemesh/markers_base.hpp,
	lifemesh/meshEntity.hpp, lifemesh/mesh_util_base.cpp,
	lifemesh/mesh_util_base.hpp, lifemesh/regionMesh2D.hpp,
	lifemesh/regionMesh3D.cpp, lifemesh/regionMesh3D.hpp,
	lifesolver/ElasticStructureHandler.hpp,
	lifesolver/NavierStokesAleHandler.hpp,
	lifesolver/NavierStokesAleSolverPC.hpp,
	lifesolver/NavierStokesHandler.hpp,
	lifesolver/NavierStokesSolverPC.hpp,
	lifesolver/VenantKirchhofSolver.hpp,
	lifesolver/convDiffReactHandler.hpp,
	lifesolver/convDiffReactSolverPC.hpp,
	lifesolver/dataConvDiffReact.hpp,
	lifesolver/dataElasticStructure.hpp,
	lifesolver/dataNavierStokes.hpp,
	lifesolver/dataSimplifiedStructure.hpp,
	lifesolver/simplifiedStructure.hpp, lifealg/SolverAztec.cpp,
	lifealg/SolverAztec.hpp, lifealg/SolverBase.hpp,
	lifealg/SolverPETSC.cpp, lifealg/SolverPETSC.hpp,
	lifealg/algebraic_facto.hpp, lifealg/dataAztec.cpp,
	lifealg/dataAztec.hpp, lifealg/dataNewton.cpp,
	lifealg/dataNewton.hpp, lifealg/generalizedAitken.hpp,
	lifealg/inexactLU.hpp, lifealg/linesearch_cubic.hpp,
	lifealg/linesearch_parabolic.hpp, lifealg/newton.hpp,
	lifealg/nonLinRichardson.hpp, lifealg/picard.hpp,
	lifealg/saddlePointCG.hpp, lifealg/vectorNorms.cpp,
	lifealg/vectorNorms.hpp, lifearray/RNM.hpp, lifearray/RNM_op.hpp,
	lifearray/RNM_opc.hpp, lifearray/RNM_tpl.hpp,
	lifearray/SimpleVect.hpp, lifearray/dummy.cpp,
	lifearray/elemMat.cpp, lifearray/elemMat.hpp,
	lifearray/elemVec.cpp, lifearray/elemVec.hpp,
	lifearray/pattern.cpp, lifearray/pattern.hpp,
	lifearray/sparseArray.cpp, lifearray/sparseArray.hpp,
	lifearray/tab.hpp, lifearray/tridiagMatrix.hpp,
	lifearray/variables.hpp, lifearray/vecUnknown.cpp,
	lifearray/vecUnknown.hpp, lifecore/GetPot.cpp, lifecore/GetPot.hpp,
	lifecore/LDebug.cpp, lifecore/LDebug.hpp, lifecore/bareItems.cpp,
	lifecore/bareItems.hpp, lifecore/basisElSh.cpp,
	lifecore/basisElSh.hpp, lifecore/chrono.hpp,
	lifecore/dataString.cpp, lifecore/dataString.hpp,
	lifecore/dataTime.cpp, lifecore/dataTime.hpp,
	lifecore/dataTransient.cpp, lifecore/dataTransient.hpp,
	lifecore/fortran_wrap.hpp, lifecore/lifeV.hpp, lifecore/policy.hpp,
	lifecore/post_proc.hpp, lifecore/singleton.hpp,
	lifecore/subDomainNeighbors.cpp, lifecore/subDomainNeighbors.hpp,
	lifecore/switch.cpp, lifecore/switch.hpp, lifecore/util_string.cpp,
	lifecore/util_string.hpp, lifefem/Operator01.hpp,
	lifefem/assemb.cpp, lifefem/assemb.hpp, lifefem/bcCond.cpp,
	lifefem/bcCond.hpp, lifefem/bcVector.cpp, lifefem/bcVector.hpp,
	lifefem/bc_manage.hpp, lifefem/bdf.cpp, lifefem/bdf.hpp,
	lifefem/bdfNS.cpp, lifefem/bdfNS.hpp, lifefem/currentBdFE.cpp,
	lifefem/currentBdFE.hpp, lifefem/currentFE.cpp,
	lifefem/currentFE.hpp, lifefem/currentHdivFE.cpp,
	lifefem/currentHdivFE.hpp, lifefem/defQuadRuleFE.cpp,
	lifefem/dof.cpp, lifefem/dof.hpp, lifefem/dofInterface3Dto2D.cpp,
	lifefem/dofInterface3Dto2D.hpp, lifefem/dofInterface3Dto3D.cpp,
	lifefem/dofInterface3Dto3D.hpp, lifefem/dofInterfaceBase.cpp,
	lifefem/dofInterfaceBase.hpp, lifefem/dofInterfaceHandler.cpp,
	lifefem/dofInterfaceHandler.hpp, lifefem/elemOper.cpp,
	lifefem/elemOper.hpp, lifefem/elemOper_ext.hpp, lifefem/geoMap.cpp,
	lifefem/geoMap.hpp, lifefem/localDofPattern.cpp,
	lifefem/localDofPattern.hpp, lifefem/meshMotion.cpp,
	lifefem/meshMotion.hpp, lifefem/quadRule.cpp, lifefem/quadRule.hpp,
	lifefem/refEle.cpp, lifefem/refEle.hpp, lifefem/refFE.cpp,
	lifefem/refFE.hpp, lifefem/refHdivFE.cpp, lifefem/refHdivFE.hpp,
	lifefem/refHybridFE.cpp, lifefem/refHybridFE.hpp,
	lifefem/regionMesh3D_ALE.cpp, lifefem/regionMesh3D_ALE.hpp:

	reindented all the libraries with the following rules

	 * indent only with spaces(no tabs) : 4 spaces
	 * ansi C/C++ format
	 * break bracket from preblock (ie { on newline)
	 * spaces around operators and parenthesis

	now the code should way easier to read ! it could be that some
	places got uglier but overall it should be much better

2004-10-05 12:10  prudhomm

	* AUTHORS, NEWS:

	added Simone (SD) to list of authors updated NEWS with work from
	Simone and Gilles (only the solvers in lifealg ;) )

2004-10-05 10:47  winkelma

	* testsuite/Makefile.am:

	moved atconfig from MOSTLYCLEANFILES to DISTCLEANFILES

2004-10-05 10:39  vmartin

	* testsuite/: testsuite.at, test_onedmodel/testsuite.at:

	fixed build error. put the test of onedmodel before the (slower) ns
	tests.

2004-10-05 10:37  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	unused variables are now commented (they might be useful later)

2004-10-05 09:55  prudhomm

	* AUTHORS, NEWS:

	updated NEWS added Alexandra and Gilles in the AUTHORS file

2004-10-05 09:53  prudhomm

	* testsuite/: Makefile.am, test_ns_bcvec/.cvsignore:

	readded test_ns_bcvec in the list of SUBDIRS since it runs properly
	now ignore automatically generated files

2004-10-05 09:38  vmartin

	* testsuite/test_onedmodel/data:

	corrected build failure

2004-10-05 09:38  prudhomm

	* NEWS:

	updated NEWS

2004-10-05 09:36  prudhomm

	* configure.in.in, life/lifealg/SolverAztec.cpp,
	life/lifealg/SolverAztec.hpp, life/lifealg/dataAztec.cpp,
	life/lifealg/dataAztec.hpp, life/lifearray/RNM_tpl.hpp,
	life/lifearray/pattern.cpp, life/lifearray/pattern.hpp,
	life/lifearray/sparseArray.cpp, life/lifearray/sparseArray.hpp,
	life/lifecore/LDebug.cpp, life/lifecore/basisElSh.hpp,
	life/lifecore/dataString.hpp, life/lifecore/fortran_wrap.hpp,
	life/lifefem/assemb.hpp, life/lifefem/bdfNS.cpp,
	life/lifefem/currentBdFE.hpp, life/lifefem/dofInterface3Dto2D.cpp,
	life/lifefem/dofInterface3Dto2D.hpp, life/lifefem/elemOper.cpp,
	life/lifefem/elemOper_ext.hpp, life/lifefem/meshMotion.hpp,
	life/lifefem/quadRule.cpp, life/lifefem/refHdivFE.hpp,
	life/lifefem/regionMesh3D_ALE.hpp, life/lifefem/staticBdFE.hpp,
	life/lifefem/v2elemVec.hpp, life/lifefem/values.hpp,
	life/lifefilters/ensight7Writer.hpp,
	life/lifefilters/medit_wrtrs.hpp,
	life/lifefilters/openDX_wrtrs.hpp, life/lifemesh/geo0D.cpp,
	life/lifemesh/geoElement.hpp, life/lifemesh/geoND.hpp,
	life/lifemesh/markers_base.hpp, life/lifemesh/regionMesh3D.hpp,
	life/lifesolver/ElasticStructureHandler.hpp,
	life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/NavierStokesSolverPC.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/dataNavierStokes.hpp, testsuite/Makefile.am,
	testsuite/lifecore/test_mark_to_bc.cpp,
	testsuite/test_fe/build_pattern.cpp,
	testsuite/test_ns_sstress/ud_functions.hpp,
	testsuite/test_onedmodel/basicOneDMesh.hpp,
	testsuite/test_onedmodel/main.cpp:

	* too many changes to remember them all * more C++ standard
	compliance. unfortunately there are still lots	of construct that
	are non standard (e.g. int v[size] where size is variable) * fixed
	a lot of template specialization * removed all ; after } (except
	for classes of course) * tons of work remains to be done before
	LifeV can be fully compiled   with g++-3.4. most lifesolver won't
	compile for example

2004-10-05 05:25  prudhomm

	* life/: lifearray/SimpleVect.hpp, lifemesh/geoElement.hpp,
	lifemesh/geoND.hpp, lifemesh/mesh_util_base.hpp,
	lifemesh/regionMesh3D.hpp:

	* C++ compliant code * again lots of code that is obviously not
	compiled, this was broken * fixed some interface that says they do
	somthing but in fact they don't   for example returning something
	while they return nothing in fact

2004-10-04 22:17  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	implementation of inverse operator in progress

2004-10-04 21:35  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	reverting evalResidual input varaibles so that input variables are
	first and modified variables are last in the calling sequence

2004-10-04 21:30  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	reverting to previous version

2004-10-04 20:20  simone

	* life/lifealg/nonLinRichardson.hpp,
	testsuite/test_fsi_dd/main.cpp, testsuite/test_fsi_dd/operFS.cpp,
	testsuite/test_fsi_dd/operFS.hpp:

	preparing for DD ... nothing yet, just comments and some function
	definition

2004-10-04 19:39  simone

	* life/lifearray/sparseArray.hpp:

	bug inversion 1.12. I put back some lines of version 1.11 ...

2004-10-04 17:10  moura

	* testsuite/test_ns_bcvec/: Makefile.am, data, main.cpp,
	testsuite.at, ud_functions.hpp:

	New test for NS using BC Vector (hope this time goes ok)

2004-10-04 17:06  moura

	* testsuite/test_ns_cyl/: Makefile.am, data, main.cpp,
	testsuite.at, ud_functions.hpp:

	Reposing the original test (hope this time it goes ok)

2004-10-04 16:56  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	added variable to store the residual at the f/s interface

2004-10-04 16:28  prudhomm

	* life/lifearray/sparseArray.hpp:

	* use this-> were appropriate for C++ compliance

	* Fixed some lots of broken code that obviously are never compiled
	!   otherwise we would have seen that a _long_ time ago

	* re-indent some part according to dirvars

	*PLEASE, use  template<>  class A<double>

	to specialize a template class.

	template<> is mandatory !!!!!

2004-10-04 16:19  prudhomm

	* life/lifearray/vecUnknown.hpp:

	PLEASE, use  template<>  class A<double>

	to specialize a template class.

	template<> is mandatory !!!!!

2004-10-04 16:18  prudhomm

	* life/lifearray/pattern.hpp:

	fixed buggy code, that actually could not compile it seems that
	there is some dead code in there (otherwise it would not have
	_NEVER_ compiled!)

	fixed C++ compliance

2004-10-04 16:17  prudhomm

	* life/lifearray/RNM.hpp:

	Fixed RNM for standard C++ compliance

2004-10-04 15:59  prudhomm

	* testsuite/test_ns_cyl/Makefile.in:

	removed Makefile.in from test

2004-10-04 14:50  moura

	* testsuite/test_ns_cyl/Makefile.in:

	New test for NS using BC Vector

2004-10-04 14:23  moura

	* testsuite/: Makefile.am, testsuite.at, test_ns_cyl/Makefile.am,
	test_ns_cyl/data, test_ns_cyl/main.cpp, test_ns_cyl/testsuite.at,
	test_ns_cyl/ud_functions.hpp:

	New test for NS using as BC an input vector (BC Vector).

2004-10-04 14:22  vmartin

	* testsuite/test_onedmodel/: datanl, oneDModelSolver.cpp:

	added the treatment of bc only with characteristics

2004-10-04 14:12  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	Fluid and solid residuals are now of type PhysVectUnknown

2004-10-04 14:10  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	fluid and solid residual are now of type PhysVectUnknown

2004-10-04 10:12  prudhomm

	* NEWS, configure.in.in:

	use LIFEV_CHECK_ALL with --enable-debug and updated NEWS

2004-10-04 10:12  prudhomm

	* life/lifecore/lifeV.hpp:

	TEST_ALL -> LIFEV_CHECK_ALL Ok it is trivial but the other macros
	will move also soon to the LIFEV_ namespace

2004-10-04 10:11  prudhomm

	* admin/: ac_check_boost.m4, ac_check_parmetis.m4,
	ac_check_petsc.m4, ac_find_file.m4:

	added ac_check_boost and su-library checks (filesystem,
	serialization and graph) get rid of warnings with automake-1.9

2004-10-04 10:04  prudhomm

	* life/lifecore/lifeV.hpp:

	update comment about to use LifeV macros but has to add LIFEV_

2004-10-04 09:39  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	Structure and fluid residual variables modifications

2004-10-04 09:17  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	added structure and fluid residual storage viriable

2004-10-04 06:24  winkelma

	* life/lifefem/: bcCond.cpp, bcCond.hpp, bc_manage.hpp:

	do not return non-const pointers to data members

2004-10-03 19:42  gfourestey

	* life/lifesolver/VenantKirchhofSolver.hpp:

	added stress computation

2004-10-02 15:18  moura

	* life/lifefem/: bcCond.cpp, bcCond.hpp, bcVector.cpp,
	bcVector.hpp, bc_manage.hpp:

	Modifications on the BC vector: now one can chose, through a flag
	added to the constructore of BC_Handler, to integrate the values
	passed on the BC vector

2004-10-01 22:25  gfourestey

	* life/lifealg/: generalizedAitken.hpp, nonLinRichardson.hpp:

	Fixed point up and running (part 2)

2004-10-01 22:24  gfourestey

	* testsuite/test_fsi_dd/: main.cpp, operFS.cpp, operFS.hpp:

	Fixed point up and running (part 1)

2004-10-01 17:48  gfourestey

	* testsuite/test_fsi_dd/: main.cpp, operFS.cpp, operFS.hpp:

	fixed point almost working properly

2004-10-01 17:47  simone

	* life/lifealg/generalizedAitken.hpp:

	small fine tunings

2004-10-01 17:47  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	bug fix

2004-10-01 16:46  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	bug fix

2004-10-01 16:05  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	1-parameter aitken computed separately

2004-10-01 15:36  simone

	* life/lifealg/generalizedAitken.hpp:

	corrected small bug

2004-10-01 14:47  vmartin

	* testsuite/test_onedmodel/: main.cpp, oneDModelHandler.cpp,
	oneDModelHandler.hpp, oneDModelSolver.cpp, oneDModelSolver.hpp,
	vectorFunction1D.cpp, vectorFunction1D.hpp:

	fixed a bug for the initialization. added a quasilinear source term
	function

2004-10-01 14:46  vmartin

	* testsuite/test_onedmodel/: data, datalin2, datalin3, datanl:

	with linear source term

2004-10-01 14:12  winkelma

	* life/lifefem/: bdf.cpp, bdf.hpp:

	* improve documentation * check for number of provide initial
	states the right way

2004-10-01 08:18  winkelma

	* testsuite/lifealg/test_linearsolvers.cpp:

	make test fail also when a solver does not converge

2004-09-30 17:27  gfourestey

	* testsuite/test_fsi_newton/operFS.cpp:

	fixed sign bugs

2004-09-30 16:00  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	debug version

2004-09-30 15:58  gfourestey

	* testsuite/test_fsi_dd/operFS.cpp,
	life/lifealg/generalizedAitken.hpp:

	bug fix

2004-09-30 14:04  winkelma

	* testsuite/test_ns_ipstab/ud_functions.hpp:

	rewrapped nicely

2004-09-30 10:04  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	* reindented * adapted outdated comment

2004-09-30 09:22  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	fixed point particular case of FSI-DD almost done

2004-09-30 09:20  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	added one mu parameter version of computeDeltaLambda

2004-09-30 07:03  winkelma

	* REDESIGN.txt:

	new redesign proposal: patterns

2004-09-29 16:52  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	begining large scale modifications

2004-09-29 16:50  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	modified algorithm and cleaning for better debugging

2004-09-29 16:49  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	fixed a small bug

2004-09-29 14:57  winkelma

	* life/lifealg/vectorNorms.cpp:

	turned abs into fabs, because std::abs is not called any more

2004-09-29 10:52  vmartin

	* testsuite/test_onedmodel/Makefile.am:

	Repository : :ext:vmartin@cmcsforge.epfl.ch:/cvsroot/lifev Module
	  : lifev Working dir: ~/src/lifev/

	In directory .: In directory admin:		  Modified
	      admin/cvs.sh In directory testsuite: In directory
	testsuite/test_onedmodel:	      * Modified
	testsuite/test_onedmodel/Makefile.am		   Modified
	       testsuite/test_onedmodel/data		   Modified
	       testsuite/test_onedmodel/datalin2	       Modified
		   testsuite/test_onedmodel/vectorFunction1D.cpp

	--------------------- End --------------------- -- last cmd: cvs -f
	update -d -P --

2004-09-29 10:51  vmartin

	* admin/detect-autoconf.sh:

	Repository : :ext:vmartin@cmcsforge.epfl.ch:/cvsroot/lifev Module
	  : lifev Working dir: ~/src/lifev/

	In directory .: In directory admin:		  Modified
	      admin/cvs.sh	       * Modified
	admin/detect-autoconf.sh In directory life: In directory
	life/lifealg: updated	    Up-To-Date
	life/lifealg/SolverBase.hpp In directory testsuite: In directory
	testsuite/test_onedmodel:		Modified
	testsuite/test_onedmodel/Makefile.am		   Modified
	       testsuite/test_onedmodel/data		   Modified
	       testsuite/test_onedmodel/datalin2	       Modified
		   testsuite/test_onedmodel/vectorFunction1D.cpp

	--------------------- End --------------------- -- last cmd: cvs -f
	update -d -P --

2004-09-29 09:25  winkelma

	* life/lifealg/SolverBase.hpp:

	first draft

2004-09-29 07:51  winkelma

	* life/lifealg/dataAztec.cpp, life/lifealg/dataAztec.hpp,
	life/lifealg/linesearch_cubic.hpp,
	life/lifealg/linesearch_parabolic.hpp, life/lifealg/newton.hpp,
	life/lifealg/nonLinRichardson.hpp, life/lifealg/picard.hpp,
	life/lifealg/saddlePointCG.hpp, life/lifearray/RNM.hpp,
	life/lifearray/RNM_tpl.hpp, life/lifearray/elemMat.cpp,
	life/lifearray/elemMat.hpp, life/lifearray/elemVec.cpp,
	life/lifearray/elemVec.hpp, life/lifearray/pattern.hpp,
	life/lifearray/sparseArray.cpp, life/lifearray/sparseArray.hpp,
	life/lifearray/variables.hpp, life/lifearray/vecUnknown.hpp,
	life/lifecore/dataTransient.cpp, life/lifecore/dataTransient.hpp,
	life/lifecore/post_proc.hpp, life/lifecore/subDomainNeighbors.hpp,
	life/lifefem/assemb.hpp, life/lifefem/bcCond.cpp,
	life/lifefem/bcCond.hpp, life/lifefem/bcVector.cpp,
	life/lifefem/bcVector.hpp, life/lifefem/bdf.cpp,
	life/lifefem/bdf.hpp, life/lifefem/bdfNS.cpp,
	life/lifefem/dofInterface3Dto2D.cpp,
	life/lifefem/dofInterface3Dto2D.hpp,
	life/lifefem/dofInterface3Dto3D.cpp,
	life/lifefem/dofInterface3Dto3D.hpp,
	life/lifefem/dofInterfaceBase.cpp,
	life/lifefem/dofInterfaceBase.hpp,
	life/lifefem/dofInterfaceHandler.cpp,
	life/lifefem/dofInterfaceHandler.hpp, life/lifefem/elemOper.cpp,
	life/lifefem/elemOper_ext.hpp, life/lifefem/geoMap.cpp,
	life/lifefem/geoMap.hpp, life/lifefem/refEle.cpp,
	life/lifefem/refEle.hpp, life/lifefem/refFE.cpp,
	life/lifefem/refFE.hpp, life/lifefem/refHybridFE.cpp,
	life/lifefem/refHybridFE.hpp, life/lifefem/v2elemVec.hpp,
	life/lifefem/values.hpp, life/lifefilters/ensight7Writer.hpp,
	life/lifefilters/gmsh_wrtrs.hpp, life/lifefilters/gmv_wrtrs.hpp,
	life/lifefilters/mesh_util.hpp, life/lifefilters/openDX_wrtrs.hpp,
	life/lifefilters/readMesh2D.hpp, life/lifefilters/readMesh3D.cpp,
	life/lifefilters/readMesh3D.hpp, life/lifefilters/vtk_wrtrs.cpp,
	life/lifefilters/vtk_wrtrs.hpp, life/lifemesh/dataMesh.hpp,
	life/lifemesh/geo0D.cpp, life/lifemesh/geo0D.hpp,
	life/lifemesh/geoElement.hpp, life/lifemesh/geoND.hpp,
	life/lifemesh/meshEntity.hpp, life/lifemesh/mesh_util_base.hpp,
	life/lifemesh/regionMesh2D.hpp, life/lifemesh/regionMesh3D.hpp,
	life/lifesolver/ElasticStructureHandler.hpp,
	life/lifesolver/NavierStokesAleHandler.hpp,
	life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/NavierStokesSolverPC.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	life/lifesolver/convDiffReactHandler.hpp,
	life/lifesolver/convDiffReactSolverPC.hpp,
	life/lifesolver/dataConvDiffReact.hpp,
	life/lifesolver/dataElasticStructure.hpp,
	life/lifesolver/dataNavierStokes.hpp,
	life/lifesolver/dataSimplifiedStructure.hpp,
	life/lifesolver/simplifiedStructure.hpp,
	testsuite/test_bdf/main.cpp,
	testsuite/test_darcy/darcySolver_post.cpp,
	testsuite/test_darcy/dataDarcy.cpp,
	testsuite/test_essentialbc/main.cpp,
	testsuite/test_fsi_dd/main.cpp, testsuite/test_fsi_dd/operFS.cpp,
	testsuite/test_fsi_newton/main.cpp,
	testsuite/test_fsi_newton/operFS.cpp,
	testsuite/test_fsi_picard/operFS.hpp,
	testsuite/test_laplacian/main.cpp,
	testsuite/test_mass_coupling/main.cpp, life/lifesolver/nsip.hpp,
	testsuite/test_masstransport/main.cpp,
	testsuite/test_mesh/test_mesh.cpp, testsuite/test_mixte/main.cpp,
	testsuite/test_naturalbc/main.cpp, testsuite/test_ns_bdf/main.cpp,
	testsuite/test_ns_cyl/main.cpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/main.cpp,
	testsuite/test_onedmodel/gracePlot.hpp,
	testsuite/test_onedmodel/main.cpp,
	testsuite/test_onedmodel/oneDModelHandler.cpp,
	testsuite/test_p2/main.cpp, testsuite/test_postproc/main.cpp,
	testsuite/test_q1/main.cpp:

	* commented out "using namespace" directives in 12 header files *
	added "std::" and "__gnu_cxx::" where needed in headers in life/ *
	added "using namespace std" where needed in source files in life/
	and in all files in testsuite/ * if this causes any problems, you
	should try one of these solutions:   1) add "std::" or
	"__gnu_cxx::" where needed   2) add "using namespace <whatever>;"
	in a source file or in testsuite   3) uncomment the commented using
	directives, which may be found like this:      grep "//using
	namespace" -r *   prefer 1) over 2) and 2) over 3). Avoid 3).
	Really	 if you choose solution 3), do NOT check it in!

2004-09-28 21:37  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	update for bug tracking with Simone

2004-09-28 20:59  gfourestey

	* testsuite/test_fsi_dd/main.cpp:

	main.cpp now compatible with the encapsulated AZTEC solver

2004-09-28 20:58  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	operFS update to compute the linear structure

2004-09-28 20:55  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	updated Richardson algorithm for linear structure

2004-09-28 20:54  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	fixed a small bug

2004-09-28 12:56  moura

	* life/lifesolver/NavierStokesHandler.hpp:

	member flux: computes the flux on a given boundary

2004-09-28 07:21  winkelma

	* life/lifealg/SolverAztec.hpp:

	get closer to coding standard

2004-09-28 07:17  winkelma

	* life/lifealg/: SolverAztec.cpp, SolverAztec.hpp:

	get closer to coding standard

2004-09-27 20:43  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	All members are now private

2004-09-27 16:13  gfourestey

	* testsuite/testsuite.at:

	removing test_fsi_dd from autotest

2004-09-27 16:00  gfourestey

	* testsuite/test_fsi_dd/: operFS.cpp, operFS.hpp:

	operFS now uses encapsulated AZTEC routines

2004-09-27 15:36  winkelma

	* life/lifealg/SolverAztec.hpp:

	added method setTolerance(tol)

2004-09-27 14:26  winkelma

	* life/lifealg/SolverAztec.cpp:

	make sure the system number does not collide with older numbering
	conventions

2004-09-27 13:43  winkelma

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/data:

	* make use of simple SolverAztec interface * added 6 lines to
	change to Petsc (that's all) * modified data file for petsc options

2004-09-27 13:31  winkelma

	* life/lifealg/: SolverAztec.cpp, SolverAztec.hpp:

	added matrix free functionality

2004-09-27 13:25  prudhomm

	* REDESIGN.txt:

	more options

2004-09-27 13:24  prudhomm

	* REDESIGN.txt:

	more about array classes

2004-09-27 12:32  winkelma

	* life/lifealg/Makefile.am:

	Removed to avoid confusion and code bloat. MixedPattern is still
	available in lifearray/pattern.hpp

2004-09-27 12:28  prudhomm

	* Templates/TEMPLATE.txt.tpl:

	template for .txt files

2004-09-27 12:28  prudhomm

	* REDESIGN.txt:

	initial version of redesign file

	please use it to store design issues and proposals

2004-09-27 10:47  vergara

	* life/lifefem/: refHdivFE.cpp, refHdivFE.hpp:

	added a std:: for string

2004-09-27 09:53  winkelma

	* life/lifealg/: SolverPETSC.cpp, SolverPETSC.hpp:

	* replaced template method setMatrix(Matrix) by two more specific
	versions: * added setMatrix(const CSRMatr<PatternType, value_type>
	&) * added setMatrix(const MSRMatr &) which does a conversion to
	CSR * documented setMatrix methods

2004-09-27 09:50  winkelma

	* life/lifealg/SolverAztec.hpp:

	documented setMatrix methods

2004-09-27 09:48  winkelma

	* life/lifearray/sparseArray.hpp:

	* improved documentation of CSRMatr * added const version of
	CSRMatr::giveRawCSR_value() for * added conversion copy constructor
	for CSRMatr from MSRMatr * added CSRMatr::operator=(const MSRMatr&)

2004-09-27 09:43  gerbeau

	* life/lifefem/elemOper.cpp:

	Fix a small bug

2004-09-27 09:39  winkelma

	* life/lifealg/mixed_pattern.hpp:

	Removed to avoid confusion and code bloat. MixedPattern is still
	available in lifearray/pattern.hpp

2004-09-27 08:04  gerbeau

	* life/lifefilters/readMesh3D.hpp:

	Switch to a less verbose mode during the reading of inria mesh file

2004-09-27 08:01  gerbeau

	* life/lifefem/: elemOper.cpp, elemOper.hpp, sobolevNorms.hpp:

	stiffness operator with a space dependent diffusion

2004-09-26 20:29  gfourestey

	* life/lifealg/nonLinRichardson.hpp:

	cosmetic changes before deep modifications

2004-09-26 20:28  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	reinserted tamplate formulation to match lifev rules

2004-09-26 19:27  gfourestey

	* testsuite/test_fsi_dd/: main.cpp, operFS.cpp, operFS.hpp:

	Algorithm update and bug fix

2004-09-26 13:41  prudhomm

	* NEWS, configure.in.in:

	no need for 0.x.9y version at this stage of LifeV development as of
	now only 0.x.y where y will be mostly 0 unless a subrelease .y
	should be made because of a bug found in the 0.x branch

2004-09-26 13:38  prudhomm

	* NEWS:

	NEW update

2004-09-26 13:35  prudhomm

	* Templates/: README, README.tpl:

	README template and README for templates

	you are stongly encouraged to used template.el from C. Wedler at
	http://emacs-template.sourceforge.net/

2004-09-26 12:57  prudhomm

	* admin/: ac_check_aztec.m4, ac_check_lapack.m4, ac_check_mpi.m4,
	ac_check_parmetis.m4, ac_check_petsc.m4, ac_check_umfpack.m4,
	ac_find_file.m4, cvs.sh, detect-autoconf.sh:

	m4-mode -> autoconf-mode (easier to read) and minor comments

2004-09-26 12:56  prudhomm

	* configure.in.in:

	disable static library who uses them anyway ?

2004-09-26 12:56  prudhomm

	* Templates/TEMPLATE.m4.tpl:

	template for autoconf macros

2004-09-24 17:26  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	added references for equations and clean up

2004-09-24 17:00  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	now return \delta\lamdba^k instead of \lambda^{k+1}

2004-09-24 16:56  vmartin

	* testsuite/test_onedmodel/: Makefile.am, data, datalin2, datalin3,
	datanl:

	new test-cases to play with linear functions

2004-09-24 16:53  vmartin

	* testsuite/test_onedmodel/: basicOneDMesh.cpp, basicOneDMesh.hpp,
	dataOneDModel.cpp, dataOneDModel.hpp, gracePlot.cpp, gracePlot.hpp,
	main.cpp, oneDModelHandler.cpp, oneDModelHandler.hpp,
	oneDModelSolver.cpp, oneDModelSolver.hpp, oneDNonLinModelParam.cpp,
	oneDNonLinModelParam.hpp, ud_functions.hpp, vectorFunction1D.cpp,
	vectorFunction1D.hpp:

	Now the one dimensional solver is vectorial (2 unknowns (A,Q) or
	(P,Q)).  It uses the Taylor-Galerkin scheme.  The non-linear
	functions of the blood flow model are implemented (not yet tested).
	The scheme has been tested so far in the linear case.  It is still
	on-going work, but a stage has been reached.

2004-09-24 16:34  vmartin

	* life/lifefilters/: medit_wrtrs.cpp, medit_wrtrs.hpp:

	added the std:: namespace

2004-09-24 15:39  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	removed pointless template formulation and bug correction

2004-09-24 15:23  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	added one-dimentional case of aitken algorithm

2004-09-24 15:19  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	fixed constructor bug

2004-09-24 15:16  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	enhanced algorithm

2004-09-24 14:46  gfourestey

	* testsuite/Makefile.am:

	added test_fsi_dd in Makefile.am

2004-09-24 14:22  simone

	* life/lifealg/generalizedAitken.hpp:

	very small bugs

2004-09-24 13:57  winkelma

	* life/lifearray/: pattern.cpp, pattern.hpp:

	* added conversion copy constructor to CSRPatt from MSRPatt *
	translated non-english comments to english

2004-09-24 13:53  winkelma

	* life/lifealg/SolverAztec.cpp:

	make use of conversion copy constructor

2004-09-24 13:50  winkelma

	* life/lifearray/: sparseArray.cpp, sparseArray.hpp:

	* documented class MSRMatr * added MSRMatr::operator= for
	conversion from CSRMatr (code from former   version of the function
	CSRmat2MSRmat) * added (implemented) conversion copy constructor
	from CSRMatr * generalized function CSRmat2MSRmat left in for
	backward compatibility * unified changed get_value functions in
	return type

2004-09-24 13:45  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	first implementation of aitken method for the richardson algoritm

2004-09-24 12:33  gfourestey

	* life/lifealg/generalizedAitken.hpp:

	template generalizedAitken new strategy

2004-09-24 09:50  winkelma

	* testsuite/data/mesh/inria/: Makefile.am, hexa1x1.mesh:

	added hexa1x1.mesh, handy for testing matrices and patterns by hand

2004-09-24 09:45  winkelma

	* testsuite/lifealg/test_linearsolvers.cpp:

	* test also SolverAztec * use simpler setMatrix() method for
	SolverPETSC * prepared everything to make test fail also in the
	case of a solver   that does not converge

2004-09-24 09:41  winkelma

	* life/lifealg/: Makefile.am, SolverAztec.cpp, SolverAztec.hpp:

	provide similar interface to Aztec as already available for Petsc

2004-09-24 09:33  winkelma

	* life/lifearray/sparseArray.hpp:

	* commented declaration of conversion copy constructor to MSRMatr
	from CSRMatr   because the implementation does not exist! * adapted
	comments about use of CSRmat2MSRmat to reality and made available
	in API documentation

2004-09-23 22:18  simone

	* life/lifealg/generalizedAitken.hpp:

	many errors and many others present ...

2004-09-23 19:26  simone

	* life/lifealg/generalizedAitken.hpp:

	restart() missing en distructor twice defined

2004-09-23 18:56  simone

	* life/lifealg/: Makefile.am, generalizedAitken.hpp,
	nonLinRichardson.hpp:

	nonLinRichardson.hpp is a slight modification of newton.hpp for the
	resolution of a nonlinear system of equation.  The aim is to use
	methods deriving from domain decomposition and apply them to a
	soupled non-linear system.

	the class generalizedAitken is used by noLinRichardson to determine
	the relaxation parameter. It is wrote in general form, even if it
	still lack of some codelines for the real general case. Should work
	for nonLinRichardson.

2004-09-23 16:12  gfourestey

	* testsuite/test_fsi_dd/: main.cpp, operFS.cpp, operFS.hpp:

	cosmetic modifications of operFS and main

2004-09-23 14:56  gfourestey

	* testsuite/test_fsi_dd/Makefile.am:

	corrected bug # 01/??

2004-09-23 14:30  gfourestey

	* testsuite/test_fsi_dd/.cvsignore:

	added .cvsignore file

2004-09-23 14:28  gfourestey

	* testsuite/test_fsi_dd/: Makefile.am, data, main.cpp, operFS.cpp,
	operFS.hpp, testsuite.at, ud_functions.hpp:

	added testsuite test_fsi_dd

2004-09-23 10:45  winkelma

	* life/lifearray/sparseArray.hpp:

	get rid of compiler warning

2004-09-23 10:13  gfourestey

	* life/lifefem/bcCond.hpp:

	added missing breaks at the end of cases Natural

2004-09-23 08:57  gfourestey

	* life/lifefem/bcCond.hpp:

	Natural and Mixte BC implementations are now separated

2004-09-21 17:03  gfourestey

	* life/lifefem/bcCond.hpp:

	modified Natural BC so that test_fsi_newton is working properly
	(not modified for all BC though)

2004-09-21 15:56  simone

	* life/lifefem/staticBdFE.cpp:

	uninitialized member '	  LifeV::StaticBdFE::invArea'

2004-09-21 09:53  winkelma

	* testsuite/lifealg/test_linearsolvers.cpp:

	Quick adaptation for new behaviour of SolverPETSC initializing and
	finalizing PETSc automatically. Should be reworked more cleanly...

2004-09-21 09:50  winkelma

	* life/lifealg/: SolverPETSC.cpp, SolverPETSC.hpp:

	* added SolverPETSC::setOptionsFromGetPot(...) * renamed
	PETSCforSingleton to PETSC and moved GetPot functionality to above
	 function * make use of singleton pattern

2004-09-10 17:04  winkelma

	* life/lifearray/sparseArray.hpp:

	* don't rely on get_values...  * replaced implementation of
	CSRMatr::diagonalize_row(...) * improved documentation

2004-09-10 15:25  vmartin

	* testsuite/: Makefile.am, testsuite.at:

	creating the test_darcytetra for darcy RT0 mixed hybrid tetra
	solver

2004-09-10 15:22  vmartin

	* testsuite/test_darcy/user_fct.hpp:

	cleaned.

2004-09-10 15:21  vmartin

	* testsuite/test_darcy/: darcyHandler.cpp, darcyHandler.hpp,
	darcySolver.cpp, darcySolver_post.cpp, data2, dataDarcy.cpp,
	dataDarcy.hpp, main.cpp, user_diffusion.cpp:

	cleaned up a bit (namespaces).

2004-09-10 15:13  vmartin

	* life/lifefem/: elemOper.cpp, elemOper.hpp:

	the mass_Hdiv are modified: one should provide the INVERSE of the
	permeability to all the mass_Hdiv methods.  a new one (based on a
	functionnal permeability) is added.

	operator TP_VdotN_Hdiv improved. works for tetra now.

2004-09-10 15:09  vmartin

	* life/lifefem/: currentHdivFE.cpp, currentHdivFE.hpp,
	defQuadRuleFE.cpp, refHdivFE.cpp, refHdivFE.hpp, refHybridFE.cpp,
	refHybridFE.hpp, staticBdFE.cpp, staticBdFE.hpp:

	darcy solver becomes tetra! modifications to allow the creation of
	RT0 mixed hybrid finite elements for the TETRAHEDRA.  work
	performed by a student of Alessandro's that I incorpored.

2004-09-10 15:04  vmartin

	* life/lifefem/: currentBdFE.cpp, currentBdFE.hpp, currentFE.cpp,
	currentFE.hpp, quadRule.cpp, quadRule.hpp, refEle.cpp, refEle.hpp,
	refFE.cpp, refFE.hpp:

	clean up a bit some of the fem files. (namespaces in particular).

2004-09-10 10:06  winkelma

	* life/lifealg/SolverPETSC.hpp:

	fix embarassing bug

2004-09-10 10:04  prudhomm

	* testsuite/test_mass_coupling/Makefile.am,
	testsuite/test_mass_coupling/ensight7-write.hpp,
	testsuite/test_mass_coupling/main.cpp,
	testsuite/test_masstransport/Makefile.am,
	testsuite/test_masstransport/ensight7-write.hpp,
	testsuite/test_masstransport/main.cpp, NEWS:

	new NEWS format to make it more clear. moved ensight7-write.hpp to
	lifefilters and renamed it ensight7Writer.hpp. fixed compilation
	for MP solvers ;)

2004-09-10 10:02  prudhomm

	* life/lifefilters/: Makefile.am, ensight7Writer.hpp:

	centralize ensight7 support instead of having multiple copies
	around sanitize the file name :) added proper license and
	authorship

2004-09-10 09:41  prudhomm

	* testsuite/lifecore/: Makefile.am, test_singleton.cpp,
	testsuite.at:

	added the singleton test

2004-09-10 09:41  prudhomm

	* life/lifecore/: Makefile.am, policy.hpp, singleton.hpp:

	added a singleton pattern implementation

2004-09-10 08:55  prudhomm

	* life/lifecore/dataTransient.hpp:

	update doxygen info Fernandez -> JFG

	update \todo list

2004-09-10 08:38  gerbeau

	* life/lifecore/: dataTransient.cpp, dataTransient.hpp:

	Data for transient problems. This is somehow redundant with
	dataTime, but dataTime was already used in some solvers and there
	were some incompatibilities with what I wanted to do. For example,
	_inittime and _endtime are in dataNavierStokes whereas I think they
	should be in dataTime.	I guess we should merge dataTime and
	dataTransient and remove the "time" data from the Navier-Stokes
	data.

2004-09-10 08:25  gerbeau

	* life/: lifearray/vecUnknown.hpp, lifecore/Makefile.am,
	lifefem/bcCond.cpp, lifefem/elemOper.cpp, lifefem/elemOper.hpp,
	lifemesh/regionMesh3D.hpp:

	A few things usefull for a Fitzhugh-Nagumo solver...

2004-09-10 08:11  prudhomm

	* testsuite/test_mass_coupling/testsuite.at:

	the mesh_dir is ./ for testsuite.at we make a symlink in the local
	directory now test_mass_coupling is operational

2004-09-10 07:25  prosi

	* testsuite/test_mass_coupling/testsuite.at:

	- just deleted the line in where the error occurs - Christophe
	please check

2004-09-10 07:24  prudhomm

	* admin/ac_check_petsc.m4, life/lifealg/SolverPETSC.cpp,
	life/lifealg/SolverPETSC.hpp:

	added check for 2.2.0 petsc interface and change solverPetsc
	accordingly to select the proper branch

2004-09-10 07:24  prudhomm

	* testsuite/test_mass_coupling/.cvsignore:

	ignore automatically generated files

2004-09-10 07:23  prosi

	* testsuite/testsuite.at:

	I don't know what I have done but now it works

2004-09-10 07:23  prudhomm

	* testsuite/data/mesh/inria/Makefile.am:

	Martin , you have to add the meshes to the list in Makefile.am if
	you want the testsuite to create the proper symlinks (and the
	automatic building system not to fail :) )

2004-09-10 07:15  prosi

	* testsuite/testsuite.at:

	removed new mass transport test from the automatically testrun -
	there is something wrong in testsuite.at - I have to check it

2004-09-10 06:59  prudhomm

	* doc/manual/Makefile.am:

	removed @

2004-09-10 06:23  winkelma

	* life/lifearray/sparseArray.hpp:

	get rid of compiler warning

2004-09-09 15:30  prosi

	* NEWS:

	updated news^

2004-09-09 15:20  prosi

	* testsuite/testsuite.at:

	included test_mass_coupling

2004-09-09 15:19  prosi

	* testsuite/test_mass_coupling/testsuite.at:

	automatically test doesn't work -Christophe please check, problems
	are might be chaused by two input files and two geometry files

2004-09-09 15:18  winkelma

	* life/lifearray/pattern.hpp:

	* added constructors to CSRPatt for IP stabilization, putting
	common code in	 new private method _buildPattern(...) * fixed some
	typos and compiler warnings

2004-09-09 15:13  winkelma

	* life/lifearray/sparseArray.hpp:

	* replaced buggy implementation of CSRMatr::diagonalize(...) * some
	translation

2004-09-09 15:09  winkelma

	* life/lifealg/SolverPETSC.cpp:

	* use values from x as initial guess for solver * fix bug in option
	handover

2004-09-09 15:08  winkelma

	* life/lifealg/SolverPETSC.hpp:

	improved documentation

2004-09-09 14:57  prosi

	* testsuite/test_mass_coupling/Makefile.am:

	UUUPS - just to make it compile :-) Makefiles are not my strenght

2004-09-09 14:23  prosi

	* testsuite/Makefile.am:

	include test_mass_coupling

2004-09-09 14:19  prosi

	* testsuite/test_mass_coupling/: Makefile.am, data-lumen,
	data-wall, ensight7-write.hpp, main.cpp, testsuite.at,
	ud_functions.hpp:

	THE COUPLED MASS TRANSPORT TEST CASE (with analytical
	approximations of the velocities)

2004-09-09 14:01  prosi

	* testsuite/data/mesh/inria/: piece-of-tube-wall.mesh,
	piece-of-tube.mesh:

	mesh files for new mass transport test case (coupling between lumen
	and wall)

2004-09-09 13:59  prosi

	* life/lifefem/bc_manage.hpp:

	change in the application of the Mixte-BC in vectorial form -
	Vincent check for Darcy ...

2004-09-09 13:58  prosi

	* life/lifefem/bcCond.hpp:

	change in the application of Mixte-BC in vectorial form - Vincent
	please check for Darcy (test-case is still compiling)

2004-09-09 13:56  prosi

	* life/lifefem/dofInterface3Dto3D.hpp:

	include change in the call of geoMap

2004-09-09 13:54  prosi

	* life/lifesolver/convDiffReactSolverPC.hpp:

	modificactions for stat. calc and inner iterations

2004-09-09 13:53  prosi

	* life/lifesolver/dataConvDiffReact.hpp:

	insert switch stationary/instationary calc and made it independent
	from NS

2004-09-09 08:09  vmartin

	* testsuite/test_onedmodel/: Makefile.am, data, main.cpp:

	minor modifs to allow a correct use of graceplot

2004-09-08 14:36  winkelma

	* life/lifealg/SolverPETSC.cpp:

	make it at least compile (hopefully) with old interface of petsc

2004-09-08 14:33  winkelma

	* life/lifealg/: SolverPETSC.cpp, SolverPETSC.hpp:

	* added class PETSCforSingleton which handles initializing from
	file and   finalizing. Should be turned into singleton. Currently
	it has to be   instantiated exactly once in the main program.  *
	refined extern "C" statement handling (ok for petsc 2.2.1 only?) *
	use PCILUSetUseDropTolerance instead of PCILUSetLevels for ilu *
	print correct iteration numbers * added method setMatrix( Matrix m
	) for CSRMatr

2004-09-08 08:36  winkelma

	* testsuite/test_fe/Makefile.am:

	LDADD is accounted for automatically by ../Makefile.testsuite

2004-09-07 09:14  winkelma

	* life/lifealg/SolverPETSC.cpp:

	make the new petsc interface the default

2004-09-07 08:45  winkelma

	* life/lifealg/SolverPETSC.cpp:

	quick fix for changed interface of petsc 2.2.1 users of petsc 2.2.1
	(or newer) change 1 to 0 in line 39

2004-09-07 08:07  prudhomm

	* admin/ac_check_petsc.m4:

	forgot HAVE_PETSC_H now it should be ok

2004-09-07 07:54  prudhomm

	* admin/ac_check_petsc.m4:

	use PETSC_ARCH to determine the architecture it seems that Debian
	has the only sane petsc installation

2004-09-06 18:37  prudhomm

	* NEWS:

	Oops di not want to commit that darcySolver is far from being ready
	for life/lifesolver

2004-09-06 18:15  prudhomm

	* admin/ac_check_petsc.m4:

	s/PETSCARCH/ac_petsc_arch/g

2004-09-06 16:41  prudhomm

	* NEWS:

	updated NEWS with the newly added --with-petsc=<> option

2004-09-06 16:39  prudhomm

	* admin/ac_check_petsc.m4:

	added --with-petsc=<top level petsc directory> configure options

2004-09-06 11:03  winkelma

	* life/lifearray/pattern.hpp:

	* factored out common code in MSRPatt::buildPattern(...) functions
	* improved documentation slightly

2004-09-05 07:30  winkelma

	* life/lifesolver/Makefile.am:

	get rid of NavierStokesHandler_miguel.hpp

2004-09-04 09:32  prudhomm

	* admin/cvs.sh:

	Fixed script missing alternative

2004-09-03 12:23  winkelma

	* NEWS:

	got rid of NavierStokesHandler_miguel.hpp

2004-09-03 12:07  winkelma

	* testsuite/: test_fsi_picard/main.cpp, test_fsi_newton/main.cpp:

	* get rid of NavierStokesHandler_miguel.hpp in
	NavierStokesAleHandler.hpp,   use NavierStokesHandler.hpp instead *
	pass time to oper also

2004-09-03 12:06  winkelma

	* testsuite/: test_fsi_picard/operFS.hpp,
	test_fsi_newton/operFS.cpp, test_fsi_newton/operFS.hpp:

	* get rid of NavierStokesHandler_miguel.hpp in
	NavierStokesAleHandler.hpp,   use NavierStokesHandler.hpp instead *
	reflect change in interface of NavierStokesHandler: time is not
	stored but   passed at calls of iterate*(...) and update*(...) *
	store time therefore

2004-09-03 12:04  winkelma

	* life/lifesolver/NavierStokesAleSolverPC.hpp:

	* get rid of NavierStokesHandler_miguel.hpp in
	NavierStokesAleHandler.hpp,   use NavierStokesHandler.hpp instead *
	reflect change in interface of NavierStokesHandler: time is not
	stored but   passed at calls of iterate*(...)

2004-09-03 12:03  winkelma

	* life/lifesolver/NavierStokesAleHandler.hpp:

	* get rid of NavierStokesHandler_miguel.hpp in
	NavierStokesAleHandler.hpp,   use NavierStokesHandler.hpp instead *
	reflect change in interface of NavierStokesHandler: time is not
	stored but   passed at calls of update*(...)

2004-09-03 12:03  winkelma

	* life/lifesolver/NavierStokesHandler.hpp:

	* get rid of NavierStokesHandler_miguel.hpp in
	NavierStokesAleHandler.hpp,   use NavierStokesHandler.hpp instead *
	made _count protected for NavierStokesAleHandler

2004-09-03 12:03  winkelma

	* life/lifesolver/NavierStokesHandler_miguel.hpp:

	get rid of NavierStokesHandler_miguel.hpp in
	NavierStokesAleHandler.hpp, use NavierStokesHandler.hpp instead

2004-09-03 11:51  prudhomm

	* NEWS:

	yeah! 1.9 is supported

2004-09-03 11:50  prudhomm

	* admin/cvs.sh:

	try to be more precise in error message

2004-09-03 11:40  prudhomm

	* admin/detect-autoconf.sh:

	forgot this to support automake 1.9

2004-09-03 11:25  prudhomm

	* NEWS, configure.in.in:

	bump up the version to 0.3.90 and already changes are pouring in
	thx to CW

2004-09-03 11:22  prudhomm

	* AUTHORS:

	let's welcome CW as one of the LifeV authors

2004-09-03 11:16  prudhomm

	* admin/cvs.sh:

	added automake 1.9

	not tested though

2004-09-03 09:50  winkelma

	* life/lifefilters/: Makefile.am, openDX_wrtrs.cpp,
	openDX_wrtrs.hpp:

	* moved wr_opendx_vector(...) without template to new file
	openDX_wrtrs.cpp   non-template function bodies should NOT be in
	header files! * missing std:: added where required * translated
	itailan comments and variables to english * realignment

2004-08-31 08:32  prudhomm

	* Makefile.am:

	0.3 is out :)

2004-08-31 07:56  prudhomm

	* Makefile.am:

	added BUGS to distro

2004-08-31 07:52  prudhomm

	* BUGS:

	backported BUGS in 0.3 branch

2004-08-31 07:51  prudhomm

	* BUGS:

	typo

2004-08-31 07:39  prudhomm

	* BUGS:

	added a BUGS file need to update cmcsforge bugs tracking system

2004-08-30 16:03  prudhomm

	* testsuite/lifealg/: MatrixTest.cpp, test_linearsolvers.cpp,
	testsuite.at:

	backported fixes from HEAD: convection/diffusion tests run with
	optimization now ;)

2004-08-30 15:52  prudhomm

	* testsuite/lifealg/: MatrixTest.cpp, test_linearsolvers.cpp,
	testsuite.at:

	use petsc option system add log_summary for MFlops and profiling
	info updated testsuite.at

2004-08-30 13:26  prudhomm

	* README, testsuite/test_onedmodel/gracePlot.cpp:

	backported fix from Christoph and minor README changes by me into
	0.3 branch

2004-08-30 13:20  prudhomm

	* doc/api/.cvsignore, doc/api/Makefile.am, testsuite/.cvsignore,
	testsuite/Makefile.am, testsuite/lifealg/Makefile.am, Makefile.am,
	NEWS:

	Forward port from LIFEV_0_3_BRANCH:

	make distcheck runs completely without failure with "--enable-opt"

	However masstransport fails without --enable-opt. We need to
	investigate this. perhaps Martin can help. It is very suspicious
	that depending on compiling options the code crashes (seg fault)

2004-08-30 13:05  prudhomm

	* Makefile.am, NEWS, doc/api/.cvsignore, doc/api/Makefile.am,
	testsuite/.cvsignore, testsuite/Makefile.am:

	make distcheck runs completely without failure with "--enable-opt"

	However masstransport fails without --enable-opt. We need to
	investigate this. perhaps Martin can help. It is very suspicious
	that depending on compiling options the code crashes (seg fault)

2004-08-30 08:34  winkelma

	* testsuite/test_onedmodel/gracePlot.cpp:

	#endif has to be within namespace, if #if is too

2004-08-30 06:20  prudhomm

	* testsuite/test_onedmodel/gracePlot.hpp:

	backported from HEAD: handle the case where grace is not available
	on the system

2004-08-30 06:09  prudhomm

	* testsuite/test_onedmodel/gracePlot.hpp:

	forgot the case where grace is not installed impletemented doPlot()
	and gracePlot( GetPot const&)

2004-08-29 23:09  prudhomm

	* NEWS:

	minor

2004-08-29 23:04  prudhomm

	* Makefile.am:

	fix for top_builddir == top_srcdir

2004-08-29 22:28  prudhomm

	* testsuite/: lifealg/Makefile.am, test_ns_cyl/Makefile.am,
	test_ns_ipstab/Makefile.am, test_p2/Makefile.am:

	backport from HEAD and 0.2 BRANCH

	cleanup after building :)

2004-08-29 22:27  prudhomm

	* README, testsuite/lifealg/Makefile.am,
	testsuite/test_ns_cyl/Makefile.am,
	testsuite/test_ns_ipstab/Makefile.am,
	testsuite/test_p2/Makefile.am:

	cleanup after building :)

2004-08-29 22:21  prudhomm

	* testsuite/: test_masstransport/Makefile.am,
	test_ns_cyl/Makefile.am, test_ns_ipstab/Makefile.am,
	test_p2/Makefile.am:

	cleanup after building :)

2004-08-29 22:06  prudhomm

	* testsuite/test_masstransport/Makefile.am:

	forgot to include this guy

2004-08-29 21:58  prudhomm

	* life/: lifealg/Makefile.am, lifefilters/Makefile.am:

	forgot to include these guys distcheck should not choke on them now

2004-08-29 21:51  prudhomm

	* NEWS, configure.in.in, doc/api/.cvsignore:

	bump up version to 0.2. It should be out soon.	ignore some files

2004-08-29 21:45  prudhomm

	* life/: lifealg/dataAztec.hpp, lifearray/values.cpp,
	lifearray/values.hpp:

	fix build by removing values.{h,c}pp

2004-08-29 21:44  prudhomm

	* doc/: Makefile.am, manual/Makefile.am:

	fixes for 0.2 builds with distcheck

2004-08-29 20:05  prudhomm

	* NEWS:

	more NEWS

2004-08-29 20:00  prudhomm

	* .cvsignore:

	ignore ChangeLog

2004-08-29 19:58  prudhomm

	* testsuite/lifealg/testsuite.at:

	200x200 for now

2004-08-29 19:52  prudhomm

	* testsuite/test_onedmodel/: data, gracePlot.cpp, gracePlot.hpp,
	oneDModelHandler.cpp, testsuite.at:

	make grace more graceful for console and automatic testing by
	allowing to disable plotting even if grace is present

2004-08-29 18:40  prudhomm

	* testsuite/Makefile.am:

	this guy must go in EXTRA_DIST too

2004-08-29 18:24  prudhomm

	* testsuite/: lifealg/Makefile.am, lifearray/Makefile.am,
	lifecore/Makefile.am, test_masstransport/Makefile.am,
	test_fe/Makefile.am:

	do what the previous commit said everywhere

2004-08-29 18:18  prudhomm

	* testsuite/: test_linearelasticity/Makefile.am,
	test_masstransport/Makefile.am, test_mesh/Makefile.am,
	test_mixte/Makefile.am, test_naturalbc/Makefile.am,
	test_ns_bdf/Makefile.am, test_ns_cyl/Makefile.am,
	test_ns_ipstab/Makefile.am, test_ns_sstress/Makefile.am,
	test_onedmodel/Makefile.am, test_p2/Makefile.am,
	test_postproc/Makefile.am, test_postproc/data,
	test_postproc/main.cpp, test_postproc/testsuite.at,
	test_q1/Makefile.am, testsuite.at, test_bdf/Makefile.am,
	test_darcy/Makefile.am, test_essentialbc/Makefile.am,
	test_fsi_newton/Makefile.am, test_fsi_picard/Makefile.am,
	test_laplacian/Makefile.am:

	added testsuite.at to Makefile.am in EXTRA_DIST needed for make
	distcheck added test_postproc to the list of tests. It seems that
	it was left out. One more test ! yeah!

2004-08-29 17:53  prudhomm

	* testsuite/test_ns_ipstab/Makefile.am:

	minor

2004-08-29 17:53  prudhomm

	* testsuite/test_masstransport/Makefile.am:

	add ensight7-write.hpp to check_HEADERS

2004-08-29 17:45  prudhomm

	* life/lifefilters/Makefile.am:

	added gmv_wrtrs.hpp to include_HEADERS

2004-08-29 17:38  prudhomm

	* life/lifealg/Makefile.am:

	add cblas and clapack to include_HEADERS

2004-08-29 17:23  prudhomm

	* life/lifearray/: values.cpp, values.hpp:

	it feels good to get rid of that

2004-08-29 17:22  prudhomm

	* testsuite/lifealg/testsuite.at, NEWS:

	2 new tests: the matrix varies between 10x10 to 1000x1000

2004-08-29 17:11  prudhomm

	* testsuite/lifealg/MatrixTest.hpp:

	values.{h,c}pp no more welcome to sparseArray header :)

2004-08-29 17:07  prudhomm

	* life/: lifealg/algebraic_facto.hpp, lifealg/dataAztec.hpp,
	lifearray/Makefile.am:

	values.{h,c}pp no more

2004-08-29 17:04  prudhomm

	* life/lifearray/Makefile.am:

	added values

2004-08-29 16:56  prudhomm

	* doc/api/Makefile.am:

	cleanup testsuite

2004-08-29 16:56  prudhomm

	* doc/Makefile.am:

	added api again

2004-08-29 16:28  prudhomm

	* README:

	populate README a tad

2004-08-29 16:23  prudhomm

	* NEWS:

	minor fix

2004-08-29 16:18  prudhomm

	* testsuite/Makefile.testsuite:

	less verbose

2004-08-29 16:15  prudhomm

	* NEWS, configure.in.in:

	bump to 0.3.0 wait for the build tonight to see if everything is ok

2004-08-29 16:05  prudhomm

	* ChangeLog, NEWS:

	removed ChangeLog as it is automatically generated

	update NEWS

2004-08-29 15:55  prudhomm

	* life/lifesolver/nsip.hpp, testsuite/test_naturalbc/main.cpp,
	testsuite/test_naturalbc/main.hpp,
	testsuite/test_naturalbc/ud_functions.hpp,
	testsuite/test_ns_bdf/main.cpp,
	testsuite/test_ns_bdf/ud_functions.hpp,
	testsuite/test_ns_cyl/main.cpp,
	testsuite/test_ns_cyl/ud_functions.hpp,
	testsuite/test_ns_ipstab/Makefile.am,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/main.cpp,
	testsuite/test_ns_ipstab/ud_functions.hpp,
	testsuite/test_ns_sstress/main.cpp,
	testsuite/test_ns_sstress/ud_functions.hpp,
	testsuite/test_ns_sstress/ud_functions_ns.hpp,
	testsuite/test_onedmodel/basicOneDMesh.cpp,
	testsuite/test_onedmodel/basicOneDMesh.hpp,
	testsuite/test_onedmodel/dataOneDModel.cpp,
	testsuite/test_onedmodel/dataOneDModel.hpp,
	testsuite/test_onedmodel/dofOneD.hpp,
	testsuite/test_onedmodel/gracePlot.cpp,
	testsuite/test_onedmodel/gracePlot.hpp,
	testsuite/test_onedmodel/main.cpp,
	testsuite/test_onedmodel/oneDModelHandler.cpp,
	testsuite/test_onedmodel/oneDModelHandler.hpp,
	testsuite/test_onedmodel/oneDModelSolver.cpp,
	testsuite/test_onedmodel/oneDModelSolver.hpp,
	testsuite/test_onedmodel/ud_functions.hpp,
	testsuite/test_p2/main.cpp, testsuite/test_p2/main.hpp,
	testsuite/test_p2/ud_functions.hpp,
	testsuite/test_postproc/main.cpp, testsuite/test_postproc/main.hpp,
	testsuite/test_postproc/ud_functions.hpp,
	testsuite/test_q1/main.cpp, testsuite/test_q1/main.hpp,
	testsuite/test_q1/ud_functions.hpp, testsuite/Makefile.testsuite,
	testsuite/lifealg/MatrixTest.cpp, testsuite/lifealg/MatrixTest.hpp,
	testsuite/lifealg/test_linearsolvers.cpp,
	testsuite/lifearray/test_simple_vect.cpp,
	testsuite/lifecore/test_debug.cpp, testsuite/test_bdf/main.cpp,
	testsuite/test_bdf/main.hpp, testsuite/test_bdf/ud_functions.hpp,
	testsuite/test_darcy/darcyHandler.cpp,
	testsuite/test_darcy/darcyHandler.hpp,
	testsuite/test_darcy/darcySolver.cpp,
	testsuite/test_darcy/darcySolver.hpp,
	testsuite/test_darcy/darcySolver_post.cpp,
	testsuite/test_darcy/dataDarcy.cpp,
	testsuite/test_darcy/dataDarcy.hpp, testsuite/test_darcy/main.cpp,
	testsuite/test_darcy/user_diffusion.cpp,
	testsuite/test_darcy/user_diffusion.hpp,
	testsuite/test_darcy/user_fct.cpp,
	testsuite/test_darcy/user_fct.hpp,
	testsuite/test_essentialbc/main.cpp,
	testsuite/test_essentialbc/main.hpp,
	testsuite/test_essentialbc/ud_functions.hpp,
	testsuite/test_fsi_newton/Makefile.am,
	testsuite/test_fsi_newton/main.cpp,
	testsuite/test_fsi_newton/operFS.cpp,
	testsuite/test_fsi_newton/operFS.hpp,
	testsuite/test_fsi_newton/ud_functions.hpp,
	testsuite/test_fsi_picard/Makefile.am,
	testsuite/test_fsi_picard/main.cpp,
	testsuite/test_fsi_picard/operFS.hpp,
	testsuite/test_fsi_picard/ud_functions.hpp,
	testsuite/test_laplacian/main.cpp,
	testsuite/test_laplacian/main.hpp,
	testsuite/test_laplacian/ud_functions.hpp,
	testsuite/test_linearelasticity/Makefile.am,
	testsuite/test_linearelasticity/main.cpp,
	testsuite/test_linearelasticity/ud_functions.hpp,
	testsuite/test_masstransport/ensight7-write.hpp,
	testsuite/test_masstransport/main.cpp,
	testsuite/test_masstransport/ud_functions.hpp,
	testsuite/test_mesh/test_mesh.cpp, testsuite/test_mixte/main.cpp,
	testsuite/test_mixte/main.hpp,
	testsuite/test_mixte/ud_functions.hpp:

	namespace LifeV is alive ! everything has been embedded in this
	namespace. It took me some while to do that I would appreciate if
	people do that automatically for new code/files

	I tried also to cleanup a bit:

	- using namespace std; : I tried to get rid of it but I stopped
	after lifecore				too much work to do for now
	- minor fixes here and there - removed norm.{h,c}pp and replaced by
	lifealg/vectorNorms.hpp - minor fixes in the testsuite

2004-08-29 15:53  prudhomm

	* life/: lifefilters/Makefile.am, lifefilters/gmsh_wrtrs.hpp,
	lifefilters/gmv_wrtrs.hpp, lifefilters/medit_wrtrs.cpp,
	lifefilters/medit_wrtrs.hpp, lifefilters/mesh_util.hpp,
	lifefilters/openDX_wrtrs.hpp, lifefilters/readMesh2D.hpp,
	lifefilters/readMesh3D.cpp, lifefilters/readMesh3D.hpp,
	lifefilters/vtk_wrtrs.cpp, lifefilters/vtk_wrtrs.hpp,
	lifemesh/dataMesh.hpp, lifemesh/geo0D.cpp, lifemesh/geo0D.hpp,
	lifemesh/geoElement.hpp, lifemesh/geoND.hpp,
	lifemesh/identifier.cpp, lifemesh/identifier.hpp,
	lifemesh/markers.hpp, lifemesh/markers_base.cpp,
	lifemesh/markers_base.hpp, lifemesh/meshEntity.hpp,
	lifemesh/mesh_util_base.cpp, lifemesh/mesh_util_base.hpp,
	lifemesh/regionMesh2D.hpp, lifemesh/regionMesh3D.cpp,
	lifemesh/regionMesh3D.hpp, lifesolver/ElasticStructureHandler.hpp,
	lifesolver/NavierStokesAleHandler.hpp,
	lifesolver/NavierStokesAleSolverPC.hpp,
	lifesolver/NavierStokesHandler.hpp,
	lifesolver/NavierStokesHandler_miguel.hpp,
	lifesolver/NavierStokesSolverPC.hpp,
	lifesolver/VenantKirchhofSolver.hpp,
	lifesolver/convDiffReactHandler.hpp,
	lifesolver/convDiffReactSolverPC.hpp,
	lifesolver/dataConvDiffReact.hpp,
	lifesolver/dataElasticStructure.hpp,
	lifesolver/dataNavierStokes.hpp,
	lifesolver/dataSimplifiedStructure.hpp,
	lifesolver/simplifiedStructure.hpp, lifealg/Makefile.am,
	lifealg/algebraic_facto.hpp, lifealg/dataAztec.cpp,
	lifealg/dataAztec.hpp, lifealg/dataNewton.cpp,
	lifealg/dataNewton.hpp, lifealg/inexactLU.hpp,
	lifealg/linesearch_cubic.hpp, lifealg/linesearch_parabolic.hpp,
	lifealg/mixed_pattern.hpp, lifealg/newton.hpp, lifealg/picard.hpp,
	lifealg/saddlePointCG.hpp, lifearray/RNM.hpp, lifearray/RNM_op.hpp,
	lifearray/RNM_opc.hpp, lifearray/RNM_tpl.hpp,
	lifearray/SimpleVect.hpp, lifearray/elemMat.cpp,
	lifearray/elemMat.hpp, lifearray/elemVec.cpp,
	lifearray/elemVec.hpp, lifearray/pattern.cpp,
	lifearray/pattern.hpp, lifearray/sparseArray.cpp,
	lifearray/sparseArray.hpp, lifearray/tab.hpp,
	lifearray/tridiagMatrix.hpp, lifearray/values.cpp,
	lifearray/values.hpp, lifearray/variables.hpp,
	lifearray/vecUnknown.cpp, lifearray/vecUnknown.hpp,
	lifecore/LDebug.cpp, lifecore/LDebug.hpp, lifecore/bareItems.cpp,
	lifecore/bareItems.hpp, lifecore/basisElSh.cpp,
	lifecore/basisElSh.hpp, lifecore/chrono.hpp,
	lifecore/dataString.cpp, lifecore/dataString.hpp,
	lifecore/dataTime.cpp, lifecore/dataTime.hpp,
	lifecore/fortran_wrap.hpp, lifecore/lifeV.hpp,
	lifecore/post_proc.hpp, lifecore/subDomainNeighbors.cpp,
	lifecore/subDomainNeighbors.hpp, lifecore/switch.cpp,
	lifecore/switch.hpp, lifecore/util_string.cpp,
	lifecore/util_string.hpp, lifefem/Operator01.hpp,
	lifefem/assemb.cpp, lifefem/assemb.hpp, lifefem/bcCond.cpp,
	lifefem/bcCond.hpp, lifefem/bcVector.cpp, lifefem/bcVector.hpp,
	lifefem/bc_manage.hpp, lifefem/bdf.cpp, lifefem/bdf.hpp,
	lifefem/bdfNS.cpp, lifefem/bdfNS.hpp, lifefem/currentBdFE.cpp,
	lifefem/currentBdFE.hpp, lifefem/currentFE.cpp,
	lifefem/currentFE.hpp, lifefem/currentHdivFE.cpp,
	lifefem/currentHdivFE.hpp, lifefem/defQuadRuleFE.cpp,
	lifefem/dof.cpp, lifefem/dof.hpp, lifefem/dofInterface3Dto2D.cpp,
	lifefem/dofInterface3Dto2D.hpp, lifefem/dofInterface3Dto3D.cpp,
	lifefem/dofInterface3Dto3D.hpp, lifefem/dofInterfaceBase.cpp,
	lifefem/dofInterfaceBase.hpp, lifefem/dofInterfaceHandler.cpp,
	lifefem/dofInterfaceHandler.hpp, lifefem/elemOper.cpp,
	lifefem/elemOper.hpp, lifefem/elemOper_ext.hpp, lifefem/geoMap.cpp,
	lifefem/geoMap.hpp, lifefem/localDofPattern.cpp,
	lifefem/localDofPattern.hpp, lifefem/meshMotion.cpp,
	lifefem/meshMotion.hpp, lifefem/quadRule.cpp, lifefem/quadRule.hpp,
	lifefem/refEle.cpp, lifefem/refEle.hpp, lifefem/refFE.cpp,
	lifefem/refFE.hpp, lifefem/refHdivFE.cpp, lifefem/refHdivFE.hpp,
	lifefem/refHybridFE.cpp, lifefem/refHybridFE.hpp,
	lifefem/regionMesh3D_ALE.hpp, lifefem/sobolevNorms.hpp,
	lifefem/staticBdFE.cpp, lifefem/staticBdFE.hpp,
	lifefem/v2elemVec.hpp, lifefem/values.hpp:

	namespace LifeV is alive ! everything has been embedded in this
	namespace. It took me some while to do that I would appreciate if
	people do that automatically for new code/files

	I tried also to cleanup a bit:

	- using namespace std; : I tried to get rid of it but I stopped
	after lifecore				too much work to do for now
	- minor fixes here and there

2004-08-29 15:48  prudhomm

	* testsuite/test_fsi_newton/norm.cpp,
	testsuite/test_fsi_newton/norm.hpp,
	testsuite/test_fsi_picard/norm.cpp,
	testsuite/test_fsi_picard/norm.hpp,
	testsuite/test_linearelasticity/norm.cpp,
	testsuite/test_linearelasticity/norm.hpp,
	testsuite/test_ns_ipstab/norm.cpp,
	testsuite/test_ns_ipstab/norm.hpp, life/lifealg/vectorNorms.cpp,
	life/lifealg/vectorNorms.hpp:

	while cleaning up and embedding everything in namespace LifeV I got
	tired of seeing these files over and over it is now in
	lifealg/vectorNorms.hpp/cpp btw, norm2 and norm1 should perhaps be
	implemented too

2004-08-29 14:20  prudhomm

	* life/lifefilters/mesh_util.cpp:

	empty file -> removed

2004-08-29 13:10  prudhomm

	* admin/ac_check_mpi.m4, admin/ac_check_petsc.m4,
	life/lifealg/.cvsignore, life/lifealg/SolverPETSC.cpp,
	life/lifealg/SolverPETSC.hpp, testsuite/lifealg/MatrixTest.cpp,
	testsuite/lifealg/MatrixTest.hpp,
	testsuite/lifealg/test_linearsolvers.cpp,
	testsuite/test_mesh/Makefile.am:

	ported to petsc 2.2

	petsc 2.2 is a requirement now if you want petsc support in LifeV,
	with any other other version will fail to compile

	test_linearsolvers is working again

2004-08-29 13:09  prudhomm

	* Templates/: TEMPLATE.am.tpl, TEMPLATE.at.tpl, TEMPLATE.cpp.tpl,
	TEMPLATE.dox.tpl, TEMPLATE.hpp.tpl:

	update templates

2004-08-29 11:54  prudhomm

	* Templates/: TEMPLATE.at.tpl, TEMPLATE.cpp.tpl, TEMPLATE.dox.tpl,
	TEMPLATE.hpp.tpl:

	add templates for LifeV using xemacs: using template.el from
	http://emacs-template.sourceforge.net/

2004-08-29 11:47  prudhomm

	* testsuite/test_mesh/test_mesh.dox:

	now test_mesh tutorial looks better

2004-08-29 11:46  prudhomm

	* testsuite/: testsuite.at, lifealg/testsuite.at,
	lifearray/testsuite.at, lifecore/testsuite.at,
	test_bdf/testsuite.at, test_darcy/testsuite.at,
	test_essentialbc/testsuite.at, test_fe/testsuite.at,
	test_fsi_newton/testsuite.at, test_fsi_picard/testsuite.at,
	test_laplacian/testsuite.at, test_linearelasticity/testsuite.at,
	test_masstransport/testsuite.at, test_mesh/testsuite.at,
	test_mixte/testsuite.at, test_naturalbc/testsuite.at,
	test_ns_bdf/testsuite.at, test_ns_cyl/testsuite.at,
	test_ns_ipstab/testsuite.at, test_ns_sstress/testsuite.at,
	test_onedmodel/testsuite.at, test_p2/testsuite.at,
	test_postproc/testsuite.at, test_q1/testsuite.at:

	added copyright and license info

2004-08-29 11:44  prudhomm

	* testsuite/test_mesh/test_mesh.cpp:

	moved documentation to test_mesh.dox

2004-08-29 08:09  prudhomm

	* admin/ac_check_mpi.m4:

	a better mpi ac check using autoconf-archive

2004-08-21 05:29  prudhomm

	* testsuite/lifecore/Makefile.am:

	fixed the case ==, and should fix the build

2004-08-20 15:58  prosi

	* life/lifesolver/: convDiffReactSolverPC.hpp,
	dataConvDiffReact.hpp:

	added reaction term in the masstransport classes

2004-08-20 15:57  prosi

	* testsuite/test_masstransport/: data, testsuite.at:

	added reaction term in the masstransport

2004-08-20 15:12  prosi

	* testsuite/test_masstransport/testsuite.at:

	now data and testsuite.at are the same

2004-08-20 14:25  prosi

	* life/lifesolver/: convDiffReactHandler.hpp,
	convDiffReactSolverPC.hpp:

	moved velocity vector on the concentration nodes to
	convDiffReactHandler- class and added method to load it from
	outside

2004-08-20 14:14  prosi

	* testsuite/test_masstransport/data:

	timestep should not be larger then calculation period -> test very
	fast due to no calculation of the test ;-) :
	----------------------------------------------------------------------

2004-08-20 11:06  prudhomm

	* NEWS:

	minor update of the NEWS

2004-08-20 10:47  prudhomm

	* testsuite/test_bdf/testsuite.at:

	removed redundant test order 5 test with order 4 already tests if
	bdf fails with wrong order

2004-08-20 10:47  prudhomm

	* testsuite/: Makefile.testsuite, test_bdf/main.cpp:

	catch std::exception in the tests I pass order 4 and it fails
	correctly now

2004-08-20 10:45  prudhomm

	* life/lifefem/bdf.cpp:

	instead of an assert that will be disabled with -DNDEBUG or
	configure --enable-opt.  throw an exception std::invalid_argument
	which will be then caught as some point of the execution flow.

2004-08-20 10:26  prudhomm

	* life/lifearray/Makefile.am, testsuite/Makefile.am,
	testsuite/gentest.sh, testsuite/testsuite.at,
	testsuite/lifealg/.cvsignore, testsuite/lifealg/Makefile.am,
	testsuite/lifealg/MatrixTest.cpp, testsuite/lifealg/MatrixTest.hpp,
	testsuite/lifealg/test_linearsolvers.cpp,
	testsuite/lifealg/testsuite.at, testsuite/lifearray/.cvsignore,
	testsuite/lifearray/Makefile.am,
	testsuite/lifearray/test_simple_vect.cpp,
	testsuite/lifearray/testsuite.at, testsuite/lifecore/.cvsignore,
	testsuite/lifecore/Makefile.am, testsuite/lifecore/gp.cpp,
	testsuite/lifecore/mesh.pot, testsuite/lifecore/mesh.pt,
	testsuite/lifecore/mesh2.pot, testsuite/lifecore/mesh2.pt,
	testsuite/lifecore/mesh3.pot, testsuite/lifecore/mesh3.pt,
	testsuite/lifecore/test_a.cpp, testsuite/lifecore/test_getpot.cpp,
	testsuite/lifecore/test_mark_to_bc.cpp,
	testsuite/lifecore/test_seq.cpp, testsuite/lifecore/testsuite.at,
	testsuite/test_bdf/testsuite.at,
	testsuite/test_laplacian/.cvsignore,
	testsuite/test_laplacian/Makefile.am,
	testsuite/test_laplacian/data, testsuite/test_laplacian/main.cpp,
	testsuite/test_laplacian/main.hpp,
	testsuite/test_laplacian/testsuite.at,
	testsuite/test_laplacian/ud_functions.hpp,
	life/lifealg/Makefile.am:

	moved _ALL_ testsuite to testsuite, created the missing
	testsuite.at and updated the main testsuite.at.

	renamed more approprietly test_matrix to test_laplacian

2004-08-20 08:54  prudhomm

	* testsuite/lifecore/Makefile.am, testsuite/lifecore/a_try.cpp,
	testsuite/lifecore/generic.cpp, testsuite/lifecore/gp.cpp,
	testsuite/lifecore/mesh.pt, testsuite/lifecore/mesh2.pt,
	testsuite/lifecore/mesh3.pt, testsuite/lifecore/tcc.cpp,
	testsuite/lifecore/test_a.cpp, testsuite/lifecore/test_casts.cpp,
	testsuite/lifecore/test_copy.cpp,
	testsuite/lifecore/test_debug.cpp,
	testsuite/lifecore/test_mark_to_bc.cpp,
	testsuite/lifecore/test_pairs.cpp, testsuite/lifecore/test_pf.cpp,
	testsuite/lifecore/test_prova.cpp,
	testsuite/lifecore/test_rotate.cpp,
	testsuite/lifecore/test_seq.cpp, testsuite/lifecore/test_size.cpp,
	testsuite/lifecore/test_typedefs.cpp,
	testsuite/lifecore/test_using.cpp,
	testsuite/lifecore/test_valarray.cpp,
	testsuite/lifecore/test_vsize.cpp, life/lifecore/Makefile.am:

	moved life/lifecore/testsuite to testsuite/lifecore

2004-08-17 17:20  prudhomm

	* testsuite/: testsuite.at, test_onedmodel/testsuite.at:

	disable fsi: need to ask Miguel to shorten the test time.
	re-enable test_onedmodel in the testsuite

2004-08-17 17:10  prudhomm

	* testsuite/: test_fsi_newton/testsuite.at,
	test_fsi_picard/testsuite.at:

	reduced the endtime so that the testsuite doesnot run forever

2004-08-17 17:03  prudhomm

	* ChangeLog, Makefile.am:

	update ChangeLog and make sure that we have an up-to-date changelog
	when a release is made

2004-08-17 16:50  prudhomm

	* testsuite/: test_fsi_newton/testsuite.at,
	test_fsi_picard/testsuite.at:

	fixed testsuite: was missing the mesh for the vessel

2004-08-17 16:47  prudhomm

	* testsuite/test_bdf/: Makefile.am, data, main.cpp, testsuite.at:

	ported to GetPot ported to new testing framework. It runs the test
	ok now

2004-08-17 16:11  prudhomm

	* ChangeLog:

	update ChangeLog

2004-08-17 16:06  prudhomm

	* NEWS, configure.in.in, configure.in.mid, admin/ac_check_aztec.m4,
	testsuite/testsuite.at, testsuite/test_fsi_newton/Makefile.am,
	testsuite/test_fsi_newton/data,
	testsuite/test_fsi_newton/testsuite.at,
	testsuite/test_fsi_picard/Makefile.am,
	testsuite/test_fsi_picard/data,
	testsuite/test_fsi_picard/testsuite.at,
	testsuite/test_linearelasticity/testsuite.at,
	testsuite/test_masstransport/Makefile.am,
	testsuite/test_masstransport/data,
	testsuite/test_masstransport/testsuite.at,
	testsuite/test_mesh/testsuite.at:

	* all tests ported to new testsuite(only three fail and one is
	disabled) * use standard naming conventions for tests executables
	(following directory name)   it is easier to make script blah blah
	blah ...

2004-08-17 15:31  prudhomm

	* testsuite/: .cvsignore, README, test_ns_bdf/Makefile.am,
	test_ns_cyl/Makefile.am, test_ns_sstress/Makefile.am:

	* added README for the LifeV testing framework * use standard
	naming conventions for the tests

2004-08-17 14:39  prudhomm

	* testsuite/test_darcy/Makefile.am:

	* use standard naming for tests: DarcySolver --> test_darcy

2004-08-17 14:36  prudhomm

	* testsuite/: test_essentialbc/data, test_mesh/data,
	test_mixte/data, test_naturalbc/data, test_p2/data, test_q1/data:

	ported the tests to GetPot. created their data file

2004-08-17 14:35  prudhomm

	* testsuite/: Makefile.testsuite, gentest.sh, testsuite.at,
	test_darcy/testsuite.at, test_essentialbc/Makefile.am,
	test_essentialbc/main.cpp, test_essentialbc/testsuite.at,
	test_fe/testsuite.at, test_fsi_newton/testsuite.at,
	test_fsi_picard/testsuite.at, test_linearelasticity/testsuite.at,
	test_masstransport/testsuite.at, test_mesh/Makefile.am,
	test_mesh/test_mesh.cpp, test_mesh/testsuite.at,
	test_mixte/Makefile.am, test_mixte/main.cpp,
	test_mixte/testsuite.at, test_naturalbc/Makefile.am,
	test_naturalbc/main.cpp, test_naturalbc/testsuite.at,
	test_ns_bdf/testsuite.at, test_ns_cyl/testsuite.at,
	test_ns_ipstab/testsuite.at, test_ns_sstress/testsuite.at,
	test_onedmodel/data, test_onedmodel/main.cpp,
	test_onedmodel/testsuite.at, test_p2/Makefile.am, test_p2/main.cpp,
	test_p2/testsuite.at, test_postproc/testsuite.at,
	test_q1/Makefile.am, test_q1/main.cpp, test_q1/testsuite.at:

	the first 8 tests are working in the new framework. the rest is
	coming real soon

2004-08-17 14:33  prudhomm

	* life/lifesolver/convDiffReactSolverPC.hpp:

	fix compilation  * warning with g++-3.3  * error with g++-3.4 (<-
	this guy is far less permissive)

	* initialized some Uint to their max value (Uint(-1)) to ease
	debugging   when you see these values you know that something is
	wrong :)

2004-08-17 12:43  prudhomm

	* testsuite/: Makefile.am, Makefile.testsuite, atlocal.in,
	expectations.qmr, gentest.sh, test_bdf_comp.qmt, test_bdf_exec.qmt,
	test_bdf_resu.qmt, test_essentialbc_comp.qmt,
	test_essentialbc_exec.qmt, test_essentialbc_resu.qmt,
	test_fe_comp.qmt, test_fe_exec.qmt, test_fe_resu.qmt,
	test_linearelasticity_comp.qmt, test_linearelasticity_exec.qmt,
	test_linearelasticity_resu.qmt, test_matrix_comp.qmt,
	test_matrix_exec.qmt, test_matrix_resu.qmt, test_mesh_comp.qmt,
	test_mesh_exec.qmt, test_mesh_resu.qmt, test_mixte_comp.qmt,
	test_mixte_exec.qmt, test_mixte_resu.qmt, test_naturalbc_comp.qmt,
	test_naturalbc_exec.qmt, test_naturalbc_resu.qmt, test_p2_comp.qmt,
	test_p2_exec.qmt, test_p2_resu.qmt, test_postproc_comp.qmt,
	test_postproc_exec.qmt, test_postproc_resu.qmt, test_q1_comp.qmt,
	test_q1_exec.qmt, test_q1_resu.qmt, testsuite.at,
	test_bdf/testsuite.at, test_darcy/Makefile.am,
	test_darcy/testsuite.at, test_essentialbc/Makefile.am,
	test_essentialbc/testsuite.at, test_fe/Makefile.am,
	test_fe/testsuite.at, test_fsi_newton/testsuite.at,
	test_fsi_picard/testsuite.at, test_linearelasticity/testsuite.at,
	test_masstransport/Makefile.am, test_masstransport/testsuite.at,
	test_mesh/Makefile.am, test_mesh/testsuite.at,
	test_mixte/testsuite.at, test_naturalbc/Makefile.am,
	test_naturalbc/testsuite.at, test_ns_bdf/Makefile.am,
	test_ns_bdf/testsuite.at, test_ns_cyl/Makefile.am,
	test_ns_cyl/testsuite.at, test_ns_ipstab/Makefile.am,
	test_ns_ipstab/testsuite.at, test_ns_sstress/Makefile.am,
	test_ns_sstress/testsuite.at, test_onedmodel/Makefile.am,
	test_onedmodel/testsuite.at, test_p2/Makefile.am,
	test_p2/testsuite.at, test_postproc/testsuite.at,
	test_q1/testsuite.at:

	now uses AutoTest from autoconf: a portable testing framework that
	fits most of our needs

2004-08-17 10:30  prudhomm

	* admin/ac_check_aztec.m4:

	don't change LDFLAGS and CPPFLAGS if the header and lib dirs have
	not been found by AC_FIND_FILE

2004-08-17 10:15  prudhomm

	* configure.in.in:

	* check pdflatex presence * check grace_np library and header
	presence * added preliminary AutoTest support(more coming real
	soon) * bump up version to 0.2.90

2004-08-17 10:14  prudhomm

	* doc/manual/Makefile.am:

	disable manual compilation if pdflatex is not available

2004-08-17 10:11  prudhomm

	* testsuite/test_onedmodel/.cvsignore:

	files to ignore

2004-08-17 10:10  prudhomm

	* testsuite/test_onedmodel/Makefile.in:

	This file should not be in CVS it is automatically generated by
	automake

2004-08-17 10:09  prudhomm

	* testsuite/test_onedmodel/: Makefile.am, Makefile.in,
	gracePlot.cpp, gracePlot.hpp:

	* Grace:  check in configure that grace_np.h and libgrace_np.a are
	actually available.

	 - $(grace_libs) contains the grace library if available
	 - HAVE_GRACE_NP_H is defined in lifeconfig.h if grace header is
	available

	* reworked a bit Makefile.am

2004-08-05 14:32  lformaggia

	* life/lifefem/: bcCond.cpp, bcCond.hpp, bcVector.cpp,
	bcVector.hpp:

	New organization to handle interfaces without explicitely
	interfacing (no need of DofInterface)

2004-07-30 20:52  vmartin

	* testsuite/test_onedmodel/: Makefile.am, Makefile.in,
	basicOneDMesh.cpp, basicOneDMesh.hpp, data, dataOneDModel.hpp,
	main.cpp, oneDModelHandler.cpp, oneDModelHandler.hpp,
	oneDModelSolver.cpp, oneDModelSolver.hpp:

	scalar and linear 1d is quite finished. not yet the compatibility
	conditions

2004-07-30 20:49  vmartin

	* testsuite/test_onedmodel/: gracePlot.cpp, gracePlot.hpp:

	graceplot handler for dynamic 1D visualisation.  the graceplot
	library is not furnished with lifev.

2004-07-30 13:55  vmartin

	* testsuite/test_onedmodel/: data, dataOneDModel.cpp,
	dataOneDModel.hpp, main.cpp, oneDModelHandler.cpp,
	oneDModelHandler.hpp, oneDModelSolver.cpp, oneDModelSolver.hpp:

	second step towards 1d: scalar and linear taylor-galerkin. no
	compatibility conditions.

2004-07-30 11:39  vmartin

	* life/lifearray/tridiagMatrix.hpp:

	tridiagonal Axpy product. (with no use of blas2)

2004-07-29 11:08  prosi

	* life/lifesolver/convDiffReactSolverPC.hpp,
	life/lifesolver/convDiffReactHandler.hpp,
	testsuite/test_masstransport/main.cpp:

	including methods for interpolating velocity on the concentration
	grid non-conforming concentration and velocity grid

2004-07-29 07:31  prosi

	* life/lifesolver/convDiffReactSolverPC.hpp:

	added privat velocity array (on concentration nodes) to
	convDiffReactSolver class (1. step)

2004-07-29 07:29  prosi

	* testsuite/test_masstransport/main.cpp:

	added privat velocity array (on the concentration nodes) to
	convDiffReactSolver class (1.step)

2004-07-28 08:58  vmartin

	* testsuite/test_darcy/data:

	write the output files in directory "./"

2004-07-27 22:23  vmartin

	* testsuite/test_onedmodel/: Makefile.am, Makefile.in, dofOneD.hpp:

	a simple dof class for 1D meshes. Mimic the behaviour of the "real"
	Dof of dof.hpp.  Not based on the lifev mesh handler format (that
	does not exist so far for 1D).	Use it rather with basicOneDMesh...

2004-07-27 22:16  vmartin

	* life/lifearray/tridiagMatrix.hpp:

	set_mat and set_mat_inc added to assemble the tridiag matrices.

2004-07-27 13:57  vmartin

	* testsuite/test_onedmodel/: Makefile.am, Makefile.in, main.cpp,
	ud_functions.hpp:

	last useful files

2004-07-27 13:55  vmartin

	* testsuite/test_onedmodel/: oneDModelHandler.cpp,
	oneDModelHandler.hpp, oneDModelSolver.cpp, oneDModelSolver.hpp:

	classes for handling and solving a 1D model.

2004-07-27 13:54  vmartin

	* testsuite/test_onedmodel/: data, dataOneDModel.cpp,
	dataOneDModel.hpp:

	data file and data Handling class for 1D model

2004-07-27 13:53  vmartin

	* testsuite/test_onedmodel/: basicOneDMesh.cpp, basicOneDMesh.hpp:

	class handling a general 1D mesh.  Possibility to construct a
	regular one (dx=cst).

2004-07-27 13:44  vmartin

	* life/lifearray/: Makefile.am, tridiagMatrix.hpp:

	added tridiagMatrix.hpp in Makefile.am and modif a comment.

2004-07-27 13:39  vmartin

	* testsuite/test_darcy/: Makefile.am, darcyHandler.cpp,
	darcySolver.cpp, darcySolver.hpp, darcySolver_post.cpp:

	Minor modif. Some more comments. Added the test in Makefile.

2004-07-27 13:31  vmartin

	* testsuite/Makefile.am:

	test_onedmodel added

2004-07-27 13:28  vmartin

	* life/lifefem/: currentFE.cpp, currentFE.hpp:

	Transformed the #if defined(THREEDIM) into switch over the
	dimension.  Purpose: multiscale problems (1D in lifev).  Did also a
	little code factorization and cleaning.

2004-07-27 13:24  vmartin

	* life/lifearray/tridiagMatrix.hpp:

	A special class for tridiagonal matrices. Under construction for 1d
	model.

2004-07-27 08:54  prudhomm

	* admin/Doxyfile.am, admin/Doxyfile.global, testsuite/Makefile.am:

	doxygen doc for testsuite

2004-07-27 08:54  prudhomm

	* testsuite/test_mesh/: Makefile.am, main.cpp, test_mesh.cpp:

	added some trivial doxygen info. will commit more soon; testcase
	for testsuite doxygen doc

2004-07-23 19:08  prudhomm

	* doc/manual/ltxcompile:

	should solve the problem for vincent get rid of the faultu option
	--file-line-error-style which does seem too new

2004-07-23 15:10  prudhomm

	* testsuite/Makefile.testsuite:

	$(EXTRA_DIST) --> $$extra_dist

2004-07-23 11:58  prudhomm

	* doc/manual/Makefile.am:

	fixed when $(srcdir) != $(buildir)

	Vincent this should fix your problem

	thanks for reporting it !!!!!!!!!

2004-07-23 11:56  prudhomm

	* testsuite/Makefile.testsuite:

	a possible fix for Vincent

	Vincent: could you please do a make in testsuite and then a make
	check ?

2004-07-23 09:18  prudhomm

	* doc/manual/: lifev-dev.tex, ltxcompile:

	- reduced size of the logfile. show only errorlog if they are
	errors

2004-07-23 08:40  prudhomm

	* doc/manual/Makefile.am:

	- reduced size of the logfile. show only errorlog if they are
	errors

2004-07-23 08:07  prudhomm

	* doc/manual/Makefile.am:

	- use a script now to compile the manual - redirect the output of
	the commands to ltxcompile.log

2004-07-23 07:39  prudhomm

	* .cvsignore, Doxyfile, Makefile.am, admin/Doxyfile.am,
	admin/Doxyfile.global, doc/api/.cvsignore, life/lifealg/.cvsignore,
	life/lifearray/.cvsignore, life/lifecore/.cvsignore,
	life/lifefem/.cvsignore, life/lifefilters/.cvsignore,
	life/lifemesh/.cvsignore, life/lifesolver/.cvsignore:

	- ignore non CVS file - Doxyfile is automatically generated make
	apidox, so remove it from CVS - all warnings and errors from
	doxygen and code documentation are redirected to Doxylog   (one
	Doxylog perdirectory to ease the reading of the problems)

2004-07-22 12:29  vmartin

	* testsuite/test_darcy/main.cpp:

	I changed the name of DarcySolver::computeHybridMatrix() into
	DarcySolver::computeHybridMatrixAndSourceRHS() for the sake of
	clarity.  (see darcySolver.hpp).  More outputs.

2004-07-22 12:26  vmartin

	* testsuite/test_darcy/: darcySolver.cpp, darcySolver.hpp,
	darcySolver_post.cpp:

	Bug fixed for the computation of the velocity (before this
	computation did not take into account the source term).  added the
	useful "void DarcySolver::_element_computation(int ielem)" that
	allows to define and take into account easily the permeabilities.
	The diffusion coefficient (i.e. permeability) can be a tensor or a
	function.  It should be easy to take a vector (1/vol) for the
	permeability.

	"_post": output the RTO velocity and the (hybrid) Trace of
	Pressure.  Example of a possibility to compute some errors if the
	analytical solution is given.

2004-07-22 12:20  vmartin

	* testsuite/test_darcy/: darcyHandler.cpp, darcyHandler.hpp:

	Two new test cases: --Robin/Mixte boundary condition --analytical
	solution More bc_functions declared for this.

2004-07-22 12:17  vmartin

	* testsuite/test_darcy/: user_diffusion.cpp, user_diffusion.hpp,
	user_fct.cpp, user_fct.hpp:

	several new user defined functions added as example.  for instance:
	analytical function, robin coefficient...  And: added user defined
	permeability functions.

2004-07-22 12:15  vmartin

	* testsuite/test_darcy/: dataDarcy.cpp, dataDarcy.hpp:

	New entries in the data files: possible use of functions for
	permeability.

2004-07-22 12:14  vmartin

	* testsuite/test_darcy/: data, data2:

	Two data files (data2 with analytic function for convergence tests)
	with new entries (see dataDarcy.hpp).

2004-07-22 11:24  vmartin

	* testsuite/data/mesh/inria/hexahexa10x10x10.mesh:

	mesh size: [0,1] [0,2] [0,3] (10x10x10)

2004-07-22 09:58  vmartin

	* testsuite/data/mesh/inria/Makefile.am:

	added a simple hexa mesh

2004-07-22 09:46  vmartin

	* life/lifefem/: currentFE.cpp, currentFE.hpp:

	added the method barycenter() of the cell

2004-07-22 09:38  vmartin

	* testsuite/data/mesh/inria/hexahexa10x10x10.mesh:

	new simple mesh : hexahedron made of 10x10x10 hexahedra

2004-07-21 13:55  prudhomm

	* testsuite/test_masstransport/Makefile.am:

	thanks to Martin, readd test_mass in the check at runtime list

2004-07-21 09:15  prosi

	* testsuite/test_masstransport/ensight7-write.hpp:

	deleted german debug message - Hey but why: german (or something
	similar) is spoken buy one third of the european population (so
	quit common)

2004-07-21 09:12  prosi

	* life/lifesolver/convDiffReactSolverPC.hpp:

	use method diameter() of class CurrentFE instead of h(), and some
	additional changes to make test succsessful

2004-07-21 09:09  prosi

	* life/lifesolver/convDiffReactHandler.hpp:

	deleted method calc_elemsize - CurrentFE includes a similar method:
	diameter()

2004-07-21 07:52  prudhomm

	* admin/ac_check_mpi.m4:

	backported fix for ac_check_mpi to have no default mpi libs if none
	was found

2004-07-21 07:16  prudhomm

	* admin/ac_check_mpi.m4:

	if you don't find the -lmpi library we don't try to find somnething
	else like (-lmpich) quick hack to allow people without mpi to link
	lifev

2004-07-20 16:41  prudhomm

	* testsuite/: test_masstransport/.cvsignore,
	test_ns_ipstab/.cvsignore, test_ns_sstress/.cvsignore:

	ignore non CVS files

2004-07-20 16:39  prudhomm

	* testsuite/: test_masstransport/Makefile.am,
	test_ns_ipstab/Makefile.am, test_ns_sstress/Makefile.am:

	update: test_ns_sstress fails, test_masstransport fails so remove
	them from the run time check list

2004-07-20 16:19  prudhomm

	* AUTHORS, NEWS, configure.in.in:

	preparing 0.2.0-pre1

2004-07-20 15:43  prudhomm

	* Makefile.am, NEWS, admin/Doxyfile.am, doc/api/.cvsignore,
	doc/api/Makefile.am:

	ported api doc generation fixes from 0.1.0 beanch to HEAD

2004-07-20 15:02  prudhomm

	* Makefile.am:

	update

2004-07-20 14:50  prudhomm

	* Makefile.am, NEWS, admin/Doxyfile.am, doc/api/Makefile.am,
	doc/common/Makefile.am, doc/common/mainheader.html,
	life/lifecore/Makefile.am:

	clean up after work is done.

2004-07-20 13:21  prudhomm

	* Doxyfile, Mainpage.dox, Makefile.am, configure.in.in,
	admin/Doxyfile.am, testsuite/test_bdf/.cvsignore,
	testsuite/test_darcy/.cvsignore,
	testsuite/test_essentialbc/.cvsignore,
	testsuite/test_fe/.cvsignore, testsuite/test_fsi_newton/.cvsignore,
	testsuite/test_fsi_picard/.cvsignore,
	testsuite/test_linearelasticity/.cvsignore,
	testsuite/test_masstransport/.cvsignore,
	testsuite/test_mixte/.cvsignore, testsuite/test_ns_bdf/.cvsignore,
	testsuite/test_ns_cyl/.cvsignore,
	testsuite/test_ns_ipstab/.cvsignore,
	testsuite/test_ns_sstress/.cvsignore, testsuite/test_p2/.cvsignore,
	testsuite/test_postproc/.cvsignore, testsuite/test_q1/.cvsignore:

	- ported changes to api documentation from 0.1.0-rc2 to HEAD   and
	modify accordingly - ignore non CVS files

2004-07-20 13:15  prudhomm

	* Mainpage.dox:

	minor change for consistency with HEAD

2004-07-20 13:10  prudhomm

	* Mainpage.dox, Makefile.am, configure.in.in:

	more work on api documentation

2004-07-20 11:53  prudhomm

	* life/: lifecore/.cvsignore, lifealg/.cvsignore,
	lifearray/.cvsignore, lifefem/.cvsignore, lifefilters/.cvsignore,
	lifemesh/.cvsignore, lifesolver/.cvsignore:

	ignore non CVS files

2004-07-20 11:09  prudhomm

	* life/lifecore/: .cvsignore, bareItems.hpp:

	ported fix to apidox-all , now compiles all the way through ignore
	non CVS files

2004-07-20 11:06  prudhomm

	* Mainpage.dox, Makefile.am, admin/Doxyfile.am, doc/api/.cvsignore,
	life/lifecore/.cvsignore, life/lifefem/.cvsignore,
	life/lifemesh/.cvsignore, life/lifemesh/bareItems.hpp,
	life/lifemesh/mesh_util.hpp:

	getting even closer to 0.1rc2  - now apidox-all works ok all way
	through  - fix doxygen comment in bareitems and mesh_util  -
	removed spaces at end of lines

2004-07-20 10:36  prudhomm

	* .cvsignore, Makefile.am, NEWS, configure.in.in,
	admin/ac_check_aztec.m4, life/lifecore/.cvsignore,
	life/lifefem/.cvsignore, life/lifemesh/.cvsignore,
	testsuite/test_bdf/.cvsignore, testsuite/test_darcy/.cvsignore,
	testsuite/test_essentialbc/.cvsignore,
	testsuite/test_fe/.cvsignore, testsuite/test_fsi_newton/.cvsignore,
	testsuite/test_fsi_picard/.cvsignore,
	testsuite/test_linearelasticity/.cvsignore,
	testsuite/test_mesh/.cvsignore, testsuite/test_mixte/.cvsignore,
	testsuite/test_naturalbc/.cvsignore,
	testsuite/test_ns_bdf/.cvsignore, testsuite/test_ns_cyl/.cvsignore,
	testsuite/test_ns_sstress/.cvsignore, testsuite/test_p2/.cvsignore,
	testsuite/test_postproc/.cvsignore, testsuite/test_q1/.cvsignore:

	getting closer to 0.1rc2  - updated ac_check_aztec.m4 from HEAD  -
	use AC_CHECK_AZTEC and AC_CHECK_LAPACK in configure now

	janitory work on 0.1 branch  - ignoring non CVS files  - removing
	automatically generated files from CVS

2004-07-20 09:54  prudhomm

	* admin/: ac_check_aztec.m4, ac_check_lapack.m4, ac_check_mpi.m4:

	backported ac_check aztec, ac_check_lapack and ac_check_mpi in 0.1
	branch

2004-07-20 09:51  prudhomm

	* admin/: ac_check_aztec.m4, ac_check_lapack.m4:

	better check for aztec and check also for trilinos/aztecoo

	moved checks to lapack, blas, g2c to ac_check_lapack.m4 (see
	configure.in.in)

2004-07-20 09:17  prudhomm

	* admin/ac_check_mpi.m4:

	configure can handle mpi or serial before it was just serial bump
	up version to 2.1-5

2004-07-20 07:50  prudhomm

	* .cvsignore, Makefile.am, NEWS, configure.in.in, admin/.cvsignore,
	doc/api/.cvsignore, doc/common/.cvsignore, doc/tex/.cvsignore,
	life/.cvsignore, life/lifecore/.cvsignore, life/lifefem/.cvsignore,
	life/lifemesh/.cvsignore, testsuite/.cvsignore,
	testsuite/test_bdf/.cvsignore, testsuite/test_darcy/.cvsignore,
	testsuite/test_essentialbc/.cvsignore,
	testsuite/test_fe/.cvsignore, testsuite/test_fsi_newton/.cvsignore,
	testsuite/test_fsi_picard/.cvsignore,
	testsuite/test_linearelasticity/.cvsignore,
	testsuite/test_mesh/.cvsignore, testsuite/test_mixte/.cvsignore,
	testsuite/test_naturalbc/.cvsignore,
	testsuite/test_ns_bdf/.cvsignore, testsuite/test_ns_cyl/.cvsignore,
	testsuite/test_ns_sstress/.cvsignore, testsuite/test_p2/.cvsignore,
	testsuite/test_postproc/.cvsignore, testsuite/test_q1/.cvsignore:

	Fixeg Bug #27 bump up version to 0.1rc2 CVS:ignore some files

2004-07-19 09:58  fernandez

	* life/lifesolver/nsip.hpp,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp:

	Last version

2004-07-19 09:58  fernandez

	* testsuite/test_ns_ipstab/main.cpp:

	only one boundary condition

2004-07-19 09:55  fernandez

	* testsuite/data/mesh/inria/Makefile.am:

	Updated

2004-07-19 08:58  fernandez

	* testsuite/data/mesh/inria/: hexa16x16.mesh, hexa2x2.mesh,
	hexa32x32.mesh, hexa4x4.mesh, hexa8x8.mesh:

	All meshes with marker 1 at the boundary and without node
	reordering

2004-07-14 12:21  prudhomm

	* AUTHORS, Makefile.am:

	minor mods

2004-07-13 08:27  prudhomm

	* admin/: cvs.sh, detect-autoconf.sh:

	make sure that if automake-1.6 exists we don't pick it !! we should
	pick at least automake-1.7

2004-06-25 11:39  simone

	* Makefile.am:

	We do no tuse dejagnu

2004-06-24 14:52  prudhomm

	* testsuite/: Makefile.testsuite, test_ns_bdf/Makefile.am,
	test_ns_bdf/data, test_ns_cyl/Makefile.am, test_ns_cyl/data,
	test_ns_ipstab/.cvsignore, test_ns_sstress/Makefile.am,
	test_ns_sstress/data:

	* now data link when top_srcdir != top_builddir is done before
	executing the tests * execute ns tests now but only for two time
	steps

2004-06-23 16:17  winkelma

	* testsuite/data/mesh/mesh++/Makefile.am:

	please don't forget to add new meshes in Makefile.am

2004-06-23 15:50  ales

	* testsuite/data/mesh/mesh++/carotide.m++:

	Better late that never

2004-06-23 12:12  simone

	* life/lifearray/pattern.hpp:

	still some errors found in the pattern.hpp file.

2004-06-22 14:42  simone

	* life/lifearray/pattern.hpp:

	Porting to itanum2: There was a little confusion btw UInt and
	Diff_t I tried to solve some of it. I hope to have corrected
	exactely.

2004-06-22 13:49  prudhomm

	* life/lifearray/pattern.hpp:

	use uint instead of size_t

2004-06-22 12:11  simone

	* life/lifearray/RNM_tpl.hpp:

	Porting to itanum2: previous ci was wrong. Actually, return *this
	since x was not existing any more and of the wrong type

2004-06-22 11:40  fernandez

	* life/lifesolver/NavierStokesHandler.hpp:

	Adding postprocessing with GMV and medit

2004-06-22 11:37  fernandez

	* testsuite/test_ns_cyl/: data, main.cpp:

	Bug fixed in main.cpp with postprocessing. Segmentation fault comes
	from the data file.  The preconditioner system didn't converge, I
	increased the max number of iterations and it works

2004-06-22 10:53  simone

	* life/lifearray/RNM_tpl.hpp:

	template<class R>  KN_<R>&  KN_<R>::map(R (*f)(R ))

	did not return anything. I think (and hope) that this is correct:

	{      for (int i=0;i<n;i++)	    {  R & x(v[index(i)]);
	  x =  f(x);}	   return x;	}

2004-06-14 10:13  simone

	* life/lifecore/bareItems.hpp:

	Compiling with the new gcc-3.4.0 compiler is very good: You may
	find some errors not detected previously.  Obviously, this implies
	an extra work for all of us.

	For example, the file bareItemps.hpp included the folliwing error:
	the template of a null "thing" must be decleared as template<> .
	This was missing.  Moreover, the new compiler detected a small
	error reguarding end(): we have to add container::end() !

	that's all ciao Simone

	In the

2004-06-14 09:26  simone

	* testsuite/test_ns_ipstab/.cvsignore:

	I have added Makefiel.in in .cvsignore since it is automatically
	created by

2004-06-14 09:21  simone

	* doc/tex/framed.sty:

	framed.sty is not a standard package for all of us. I put it here.
	If somebody does not agree, please remove it. I will not claim.
	But know that OTHERS have the same problem\! ;-)

2004-06-09 16:05  fernandez

	* life/lifesolver/NavierStokesAleSolverPC.hpp:

	Last version had a bad (experimental) convective term.

2004-06-09 15:40  winkelma

	* testsuite/data/mesh/inria/Makefile.am:

	added missing meshes

2004-06-09 11:15  fernandez

	* testsuite/Makefile.am:

	new test_ns_ipstab directory

2004-06-09 11:04  fernandez

	* testsuite/: test_fsi_newton/main.cpp, test_fsi_picard/main.cpp,
	test_linearelasticity/main.cpp, test_masstransport/main.cpp,
	test_ns_bdf/data, test_ns_bdf/main.cpp, test_ns_cyl/main.cpp,
	test_ns_sstress/data, test_ns_sstress/main.cpp:

	Removing $define MESH_INRIA MESH MOX, now we set up the mesh type
	on the data file (mesh_file=.mesh or .m++)

2004-06-09 09:48  fernandez

	* life/lifesolver/nsip.hpp, testsuite/test_ns_ipstab/Makefile.am,
	testsuite/test_ns_ipstab/NavierStokesSolverIP.hpp,
	testsuite/test_ns_ipstab/data, testsuite/test_ns_ipstab/main.cpp,
	testsuite/test_ns_ipstab/norm.cpp,
	testsuite/test_ns_ipstab/norm.hpp,
	testsuite/test_ns_ipstab/ud_functions.hpp:

	test IP stabilization

2004-06-09 09:31  fernandez

	* life/lifesolver/NavierStokesHandler.hpp:

	postProcessing modified (allows GMV)

2004-06-09 09:29  fernandez

	* life/lifemesh/dataMesh.hpp:

	Added new options: mesh_type, mesh_faces, mesh_edges

2004-06-09 09:28  fernandez

	* life/lifefem/: assemb.hpp, elemOper.cpp, elemOper.hpp,
	sobolevNorms.hpp:

	IP stabilization

2004-06-09 09:25  fernandez

	* life/lifearray/: pattern.hpp, sparseArray.hpp, values.hpp,
	vecUnknown.hpp:

	New routines comming from IP stabilization

2004-06-09 09:21  fernandez

	* life/lifefilters/gmv_wrtrs.hpp:

	Postprocessing using the GMV visulazation software

2004-06-09 08:15  fernandez

	* testsuite/data/mesh/inria/: hexa16x16.mesh, hexa2x2.mesh,
	hexa32x32.mesh, hexa4x4.mesh, hexa8x8.mesh:

	Mesh files for error computations usign IP stabilization

2004-06-07 15:49  prudhomm

	* AUTHORS, NEWS, configure.in.in:

	do not check for umfpack yet (it is not used yet anyway)

2004-06-07 15:06  winkelma

	* Mainpage.dox:

	* fixed typos * changed URL for more documentation according to new
	homepage

2004-06-01 17:47  prudhomm

	* life/lifecore/: LDebug.cpp, LDebug.hpp:

	added documentation to LDebug()

2004-06-01 11:10  prudhomm

	* Makefile.am:

	Oops spaces instead of tabs

2004-06-01 11:08  prudhomm

	* Makefile.am:

	now apidox-all generates both the general index file for doxygen
	and the per-library documentation

2004-05-31 07:41  prudhomm

	* NEWS, configure.in.in, configure.in.mid:

	set LIFE_PREFIX define in lifeconfig.h updated NEWS file

2004-05-31 07:35  prudhomm

	* NEWS, configure.in.in:

	Release Candidate 1 for 0.1.0

2004-05-31 07:32  prudhomm

	* .cvsignore, .emacs.dirvars:

	added emacs dirvars config file consistent with HEAD

2004-05-31 07:27  prudhomm

	* doc/manual/lifev-dev.tex:

	fix

2004-05-27 15:39  fernandez

	* testsuite/test_fsi_picard/data:

	Correcting mesh path in data file

2004-05-27 15:34  lformaggia

	* life.kdevelop:

	For MOX

2004-05-27 15:34  lformaggia

	* configure.in.in:

	Reflects new library arrangement

2004-05-27 15:24  fernandez

	* testsuite/test_fsi_newton/data:

	Correcting mesh path in data file

2004-05-27 15:21  fernandez

	* testsuite/data/mesh/inria/vessel2x4x20_10cm.mesh:

	Mesh file added from linearelasticity test

2004-05-27 15:16  fernandez

	* testsuite/test_linearelasticity/: data, vessel2x4x20_10cm.mesh:

	Removing mesh file and correct data file

2004-05-27 14:32  prosi

	* testsuite/test_masstransport/data:

	changed mesh file for testcase

2004-05-27 14:30  lformaggia

	* testsuite/: test_darcy/darcySolver.cpp, test_fsi_newton/main.cpp,
	test_fsi_newton/operFS.cpp, test_fsi_newton/operFS.hpp,
	test_fsi_picard/main.cpp, test_fsi_picard/operFS.hpp,
	test_linearelasticity/main.cpp,
	test_masstransport/ensight7-write.hpp:

	Modified to support the new definition of RegioMesh3D:

	_mesh.getGeoMap() has been replaces by getGeoMap(_mesh)

2004-05-27 14:29  lformaggia

	* life/lifefem/: regionMesh3D_ALE.cpp, regionMesh3D_ALE.hpp:

	regionMesh3D_ALE is a specialisation of regionMesh3D that
	implements the methods

	getGeoMap() (see also geoMap.h in lifefem) getFE()

2004-05-27 14:24  prudhomm

	* testsuite/data/mesh/inria/Makefile.am:

	forgot to add these meshes for the link when top_srcdir !=
	top_builddir

2004-05-27 14:15  lformaggia

	* life/lifefem/geoMap.hpp:

	added getGeoMap function that gets the GeoMap assocatied to a mesh.
	 Needed in order to make lifemesh independent from lifefem

2004-05-27 14:14  lformaggia

	* life/: lifealg/Makefile.am, lifealg/pattern.cpp,
	lifealg/pattern.hpp, lifealg/values.cpp, lifealg/values.hpp,
	lifearray/Makefile.am, lifearray/elemMat.cpp,
	lifearray/elemMat.hpp, lifearray/elemVec.cpp,
	lifearray/elemVec.hpp, lifearray/pattern.cpp,
	lifearray/pattern.hpp, lifearray/sparseArray.cpp,
	lifearray/sparseArray.hpp, lifearray/values.cpp,
	lifearray/values.hpp, lifecore/Makefile.am, lifecore/bareItems.cpp,
	lifecore/bareItems.hpp, lifecore/basisElSh.cpp,
	lifecore/basisElSh.hpp, lifefem/Makefile.am,
	lifefem/defQuadRuleFE.cpp, lifefem/elemMat.cpp,
	lifefem/elemMat.hpp, lifefem/elemVec.cpp, lifefem/elemVec.hpp,
	lifefem/v2elemVec.cpp, lifefem/v2elemVec.hpp, lifefem/values.hpp,
	lifefilters/Makefile.am, lifefilters/mesh_util.cpp,
	lifefilters/mesh_util.hpp, lifefilters/readMesh2D.hpp,
	lifefilters/readMesh3D.cpp, lifefilters/readMesh3D.hpp,
	lifemesh/Makefile.am, lifemesh/bareItems.cpp,
	lifemesh/bareItems.hpp, lifemesh/basisElSh.cpp,
	lifemesh/basisElSh.hpp, lifemesh/mesh_util.cpp,
	lifemesh/mesh_util.hpp, lifemesh/mesh_util_base.hpp,
	lifemesh/readMesh2D.hpp, lifemesh/readMesh3D.cpp,
	lifemesh/readMesh3D.hpp, lifemesh/regionMesh3D.hpp,
	lifesolver/ElasticStructureHandler.hpp, lifesolver/Makefile.am,
	lifesolver/NavierStokesHandler.hpp,
	lifesolver/NavierStokesHandler_miguel.hpp,
	lifesolver/convDiffReactHandler.hpp:

	MOved files and classes to suit new organization.

	Makefiles.am reflects the changes

2004-05-27 14:08  lformaggia

	* admin/: ac_check_aztec.m4, ac_check_mpi.m4, ac_check_parmetis.m4,
	ac_check_petsc.m4, ac_check_umfpack.m4:

	Modified to account for MOX system

	PLEASE CHRISTOPHE CHECK IN PARTICULAR ac_check_petsc.m4

2004-05-27 12:35  prudhomm

	* life/lifealg/: SolverPETSC.cpp, SolverPETSC.hpp:

	namespace life --> namespace Life

2004-05-27 12:30  prudhomm

	* life/: ldebug.areas, lifecore/LDebug.cpp, lifecore/LDebug.hpp,
	lifecore/Makefile.am:

	implemented area debugging

	Now you can do something like

	LDebug( 1000 ) << "value= " << value << "\n";

	and to see this message you will need to export the DEBUG variable

	export DEBUG="1000"

	This is handled at execution time and not compile time.

2004-05-27 12:02  prudhomm

	* configure.in.in:

	defined LIFE_PREFIX in lifeconfig.h it is the root location where
	LifeV is installed

2004-05-27 11:35  prudhomm

	* life/lifealg/: SolverPETSC.cpp, SolverPETSC.hpp:

	obey the no indentation rule in namespace thanks to dirvars

2004-05-27 11:30  prudhomm

	* .cvsignore, admin/.cvsignore, doc/common/.cvsignore,
	doc/tex/.cvsignore, life/.cvsignore, life/lifealg/.cvsignore,
	life/lifealg/SolverPETSC.hpp, life/lifearray/.cvsignore,
	life/lifecore/.cvsignore, life/lifefem/.cvsignore,
	life/lifefilters/.cvsignore, life/lifemesh/.cvsignore,
	life/lifesolver/.cvsignore, testsuite/.cvsignore,
	testsuite/test_bdf/.cvsignore, testsuite/test_darcy/.cvsignore,
	testsuite/test_essentialbc/.cvsignore,
	testsuite/test_fe/.cvsignore, testsuite/test_fsi_newton/.cvsignore,
	testsuite/test_fsi_picard/.cvsignore,
	testsuite/test_linearelasticity/.cvsignore,
	testsuite/test_masstransport/.cvsignore,
	testsuite/test_mesh/.cvsignore, testsuite/test_mixte/.cvsignore,
	testsuite/test_naturalbc/.cvsignore,
	testsuite/test_ns_bdf/.cvsignore, testsuite/test_ns_cyl/.cvsignore,
	testsuite/test_ns_sstress/.cvsignore, testsuite/test_p2/.cvsignore,
	testsuite/test_postproc/.cvsignore, testsuite/test_q1/.cvsignore:

	janitory work tell CVS to ignore some automatically generated files
	(objects, ...)

2004-05-27 11:25  prudhomm

	* .emacs-dirvars:

	added emacs dirvars (using dirvars.el) for global configuration of
	indentation, tabing, ...

2004-05-27 11:22  prudhomm

	* life/lifealg/Makefile.am:

	removed lifefem dependency from lifealg. this was need when
	compiling with -g -O0. Luca will fix that soon after values.hpp is
	split

2004-05-26 13:09  prudhomm

	* doc/manual/lifev-dev_generalities.tex:

	minor update iacspc50 --> cmcsforge

2004-05-19 14:29  prudhomm

	* life/lifealg/Makefile.am, life/lifearray/Makefile.am,
	testsuite/Makefile.am:

	some small fixes in Makefile.am

2004-05-18 16:37  prudhomm

	* configure.in.in, admin/ac_check_petsc.m4,
	admin/ac_check_umfpack.m4, life/lifealg/SolverPETSC.cpp,
	life/lifealg/SolverPETSC.hpp:

	- renamed test_petsc --> test_linearsolvers - now HAVE_PETSC_H and
	HAVE_UMFPACK_H defined or not defined in lifeconfig.h	handles the
	cases where petsc and umfpack may be installed or not installed -
	preliminary work on adding test for umfpack (full commit soon) -
	moved finite difference  matrices (mass matrix and
	convection/diffusion)	to MatrixTest.{h,c}pp

2004-05-18 13:45  prudhomm

	* Makefile.am, configure.in.in, doc/common/doxygen.css,
	doc/common/footer.html, doc/common/header.html,
	doc/common/mainfooter.html, doc/common/mainheader.html,
	life/lifealg/Makefile.am, life/lifealg/SolverPETSC.cpp,
	life/lifealg/SolverPETSC.hpp, life/lifealg/values.cpp,
	life/lifealg/values.hpp, testsuite/test_masstransport/.cvsignore:

	- update doxygen tools - added SolverPETSC a simple interface to
	PETSC linear solvers   by default gmres + ilu	the matrix format
	is CSR. MSR should added at some point - added test_petsc.cpp to
	see how it works on "finite difference"   matrices - ignore some
	automatically generated files

2004-05-06 15:04  prosi

	* testsuite/test_masstransport/: Makefile.am, data,
	ensight7-write.hpp, main.cpp, ud_functions.hpp:

	test case for mass transport

2004-05-06 14:59  prosi

	* life/lifesolver/: Makefile.am, convDiffReactHandler.hpp,
	convDiffReactSolverPC.hpp, dataConvDiffReact.hpp:

	mass transport class (but still under constructions) updates will
	follow

2004-05-05 10:50  prudhomm

	* life/lifesolver/NavierStokesHandler.hpp:

	more std::

2004-05-05 10:22  prosi

	* life/lifesolver/NavierStokesHandler.hpp:

	 I have to follow Christophe's rules

2004-05-05 09:56  prosi

	* testsuite/test_ns_cyl/: data, main.cpp:

	modified testcase with possibility to read (write) data from (to)
	file

2004-05-05 09:54  prosi

	* life/lifesolver/NavierStokesHandler.hpp:

	include initialization of fluid solver with data from file

2004-05-05 08:06  prosi

	* life/lifefem/: defQuadRuleFE.cpp, quadRule.hpp:

	added 15pt quatrule for tetrahedrons

2004-05-05 07:31  prosi

	* life/lifefem/elemOper.cpp:

	corrected grad() for different quadrules of pressure and velocity,
	but there might be a better way to do this

2004-05-03 22:03  prudhomm

	* doc/api/.cvsignore:

	ignore

2004-05-03 22:02  prudhomm

	* .cvsignore, Doxyfile, Mainpage.dox, Makefile.am, configure.in.in,
	admin/Doxyfile.am, admin/Doxyfile.global, admin/Makefile.am,
	doc/Makefile.am, doc/api/Makefile.am, doc/common/doxygen.css,
	doc/common/footer.html, doc/common/header.html,
	doc/common/mainfooter.html, doc/common/mainheader.html,
	doc/tex/lifev.bib, life/Makefile.am, life/lifecore/Makefile.am,
	life/lifefem/Makefile.am, life/lifemesh/Makefile.am:

	added doxygen documentation update biblio with recent talk in graz

2004-05-03 16:05  prosi

	* admin/: ac_check_mpi.m4, ac_check_petsc.m4:

	CP: compiles now and cleanup a bit martin CVS

2004-05-03 15:40  prudhomm

	* admin/: ac_check_parmetis.m4, ac_check_petsc.m4:

	one more iteration for martin who does nopt have petsc umfpack and
	parmetis

2004-05-03 15:15  prudhomm

	* admin/: ac_check_parmetis.m4, ac_check_petsc.m4,
	ac_check_umfpack.m4:

	don't stop and exit configure if umfpack petsc or parmetis are not
	found

2004-05-03 14:25  prudhomm

	* Mainpage.dox, Makefile.am, configure.in.in, admin/Doxyfile.am,
	admin/Doxyfile.global, life/Makefile.am, life/lifealg/Makefile.am,
	life/lifearray/Makefile.am, life/lifearray/vecUnknown.hpp,
	life/lifecore/Makefile.am, life/lifefem/Makefile.am,
	life/lifefilters/Makefile.am, life/lifemesh/Makefile.am,
	life/lifesolver/Makefile.am:

	framework for doxygen documentation per library

2004-05-03 10:26  prudhomm

	* configure.in.in:

	bump up development version to 0.1.90

2004-05-03 10:23  prudhomm

	* NEWS, life/lifealg/Makefile.am, life/lifearray/vecUnknown.cpp,
	life/lifearray/vecUnknown.hpp, life/lifefem/elemVec.cpp,
	life/lifefem/elemVec.hpp, life/lifefem/meshMotion.cpp,
	life/lifefem/meshMotion.hpp, life/lifemesh/Makefile.am,
	life/lifesolver/ElasticStructureHandler.hpp,
	life/lifesolver/NavierStokesAleHandler.hpp,
	life/lifesolver/NavierStokesAleSolverPC.hpp,
	life/lifesolver/NavierStokesHandler.hpp,
	life/lifesolver/NavierStokesHandler_miguel.hpp,
	life/lifesolver/NavierStokesSolverPC.hpp,
	life/lifesolver/VenantKirchhofSolver.hpp,
	testsuite/test_bdf/main.cpp, testsuite/test_darcy/darcySolver.cpp,
	testsuite/test_darcy/darcySolver_post.cpp,
	testsuite/test_essentialbc/main.cpp, testsuite/test_fe/Makefile.am,
	testsuite/test_fsi_newton/main.cpp,
	testsuite/test_fsi_newton/operFS.cpp,
	testsuite/test_fsi_picard/main.cpp,
	testsuite/test_fsi_picard/operFS.hpp,
	testsuite/test_mixte/main.cpp, testsuite/test_naturalbc/main.cpp,
	testsuite/test_p2/Makefile.am, testsuite/test_p2/main.cpp,
	testsuite/test_postproc/main.cpp, testsuite/test_q1/main.cpp:

	see NEWS.

	* updated libtool scripts * changed interface of vecunknown classes
	** .vec() is not required anymore ** speed issue corrected * fixed
	all test_* with the new vecunknown classes interface

2004-05-03 09:48  prudhomm

	* admin/ltmain.sh:

	see NEWS.

	updated libtool scripts added some tests for make distcheck or make
	check

2004-04-19 08:49  prudhomm

	* configure.in.in:

	still prerelease - bumped up to 0.1.0pre6

2004-04-19 08:48  prudhomm

	* Doxyfile, NEWS, life/lifecore/vecUnknown.hpp:

	* Performance issue fixed with .vec() in the const case. A copy was
	done   each time it was called. That's a serious performance
	bottleneck.  * updated Doxyfile for doxygen generation

2004-04-12 10:39  prudhomm

	* admin/ac_check_parmetis.m4:

	parmetis check

2004-04-12 10:39  prudhomm

	* NEWS, configure.in.in:

	NEWS updates bump up to 0.1.90 added checks for petsc, parmetis,
	umfpack and mpi

2004-04-12 10:33  prudhomm

	* testsuite/test_bdf/Makefile.am:

	removed warning when executing make -f Makefile.cvs

2004-04-06 10:32  prudhomm

	* admin/: ac_check_aztec.m4, ac_check_mpi.m4, ac_check_petsc.m4,
	ac_check_umfpack.m4:

	hey goodies start to crawl in

	first check in configure that mpi, umfpack petsc, aztec  are
	existing and set the corresponding environment variables

	it is preliminary to the mpi, petsc and umfpack interfaces

2004-04-01 12:41  prudhomm

	* NEWS, life/lifefem/elemOper.cpp:

	backported fix for bug #23 from Branch	LIFEV_0_1_0_BRANCH

2004-04-01 12:39  prudhomm

	* NEWS:

	updated NEWS

2004-04-01 12:35  prudhomm

	* life/lifefem/elemOper.cpp:

	fix bug  in elemOper.cpp:stiff_sd while building the extra diagonal
	contribution

	thanks Martin

2004-03-31 14:43  prudhomm

	* testsuite/: Makefile.testsuite, test_bdf/Makefile.am,
	test_mixte/Makefile.am, test_p2/Makefile.am,
	test_postproc/Makefile.am, test_q1/Makefile.am:

	now all testsuite tests compile

	only links fail because of the problem in lifemesh

2004-03-31 14:42  prudhomm

	* life/lifearray/Makefile.am:

	added testsuite for test_simplevect

2004-03-31 10:07  prudhomm

	* configure.in.in, life/lifealg/.cvsignore,
	life/lifealg/Makefile.am, life/lifealg/tab.hpp,
	life/lifearray/.cvsignore, life/lifearray/Makefile.am,
	life/lifearray/SimpleVect.hpp, life/lifearray/tab.hpp,
	life/lifearray/variables.hpp, life/lifearray/vecUnknown.cpp,
	life/lifearray/vecUnknown.hpp, life/lifecore/Makefile.am,
	life/lifecore/SimpleVect.hpp, life/lifecore/bdf.cpp,
	life/lifecore/bdf.hpp, life/lifecore/bdfNS.cpp,
	life/lifecore/bdfNS.hpp, life/lifecore/variables.hpp,
	life/lifecore/vecUnknown.cpp, life/lifecore/vecUnknown.hpp,
	life/lifefem/Makefile.am, life/lifefem/bdf.cpp,
	life/lifefem/bdf.hpp, life/lifefem/bdfNS.cpp,
	life/lifefem/bdfNS.hpp, life/lifefem/meshMotion.cpp,
	life/lifefem/meshMotion.hpp, life/lifefilters/.cvsignore,
	life/lifefilters/Makefile.am, life/lifemesh/Makefile.am,
	life/lifesolver/.cvsignore, life/lifesolver/Makefile.am:

	moves almost finished it compiles except for lifemesh which still
	has dependency with lifefem Luca knows better than me that part It
	should be splitted between lifemesh and lifefilters(mesh ops with
	fe dependencies)

2004-03-31 10:03  prudhomm

	* life/lifemesh/: mesh_util.cpp, mesh_util.hpp, mesh_util_base.cpp,
	mesh_util_base.hpp:

	readded mesh_util

2004-03-31 10:02  prudhomm

	* life/lifemesh/: Makefile.am, meshMotion.cpp, meshMotion.hpp,
	mesh_util.cpp, mesh_util.hpp, mesh_util_base.cpp,
	mesh_util_base.hpp:

	moved

2004-03-31 08:49  prudhomm

	* life/: lifefem/bcCond.cpp, lifefem/bcCond.hpp,
	lifefem/bcVector.cpp, lifefem/bcVector.hpp, lifefem/dof.cpp,
	lifefem/dof.hpp, lifefem/dofInterface3Dto2D.cpp,
	lifefem/dofInterface3Dto2D.hpp, lifefem/dofInterface3Dto3D.cpp,
	lifefem/dofInterface3Dto3D.hpp, lifefem/dofInterfaceBase.cpp,
	lifefem/dofInterfaceBase.hpp, lifefem/dofInterfaceHandler.cpp,
	lifefem/dofInterfaceHandler.hpp, lifemesh/bcCond.cpp,
	lifemesh/bcCond.hpp, lifemesh/bcVector.cpp, lifemesh/bcVector.hpp,
	lifemesh/dof.cpp, lifemesh/dof.hpp,
	lifemesh/dofInterface3Dto2D.cpp, lifemesh/dofInterface3Dto2D.hpp,
	lifemesh/dofInterface3Dto3D.cpp, lifemesh/dofInterface3Dto3D.hpp,
	lifemesh/dofInterfaceBase.cpp, lifemesh/dofInterfaceBase.hpp,
	lifemesh/dofInterfaceHandler.cpp, lifemesh/dofInterfaceHandler.hpp:

	moved dof* and bc* to lifefem they belong there

	lifemesh is only for mesh operations

	mesh checks with Fe should go in lifefilters

2004-03-31 08:30  prudhomm

	* life/: lifealg/algebraic_facto.hpp, lifealg/tab.hpp,
	lifecore/Operator01.hpp, lifecore/algebraic_facto.hpp,
	lifecore/bc_manage.hpp, lifecore/tab.hpp, lifefem/Operator01.hpp,
	lifefem/bc_manage.hpp:

	more moves

2004-03-31 08:09  prudhomm

	* configure.in.in, life/lifealg/dataAztec.cpp,
	life/lifealg/dataAztec.hpp, life/lifealg/dataNewton.cpp,
	life/lifealg/dataNewton.hpp, life/lifealg/linesearch_cubic.hpp,
	life/lifealg/linesearch_parabolic.hpp, life/lifealg/newton.hpp,
	life/lifealg/values.cpp, life/lifealg/values.hpp,
	life/lifecore/assemb.cpp, life/lifecore/assemb.hpp,
	life/lifecore/dataAztec.cpp, life/lifecore/dataAztec.hpp,
	life/lifecore/dataElasticStructure.hpp, life/lifecore/dataMesh.hpp,
	life/lifecore/dataNavierStokes.hpp, life/lifecore/dataNewton.cpp,
	life/lifecore/dataNewton.hpp,
	life/lifecore/dataSimplifiedStructure.hpp,
	life/lifecore/elemMat.cpp, life/lifecore/elemMat.hpp,
	life/lifecore/elemVec.cpp, life/lifecore/elemVec.hpp,
	life/lifecore/linesearch_cubic.hpp,
	life/lifecore/linesearch_parabolic.hpp, life/lifecore/newton.hpp,
	life/lifecore/simplifiedStructure.hpp, life/lifecore/values.cpp,
	life/lifecore/values.hpp, life/lifefem/assemb.cpp,
	life/lifefem/assemb.hpp, life/lifefem/elemMat.cpp,
	life/lifefem/elemMat.hpp, life/lifefem/elemVec.cpp,
	life/lifefem/elemVec.hpp, life/lifemesh/dataMesh.hpp,
	life/lifesolver/dataElasticStructure.hpp,
	life/lifesolver/dataNavierStokes.hpp,
	life/lifesolver/dataSimplifiedStructure.hpp,
	life/lifesolver/simplifiedStructure.hpp:

	more moves

2004-03-30 16:38  prudhomm

	* life/: lifecore/ElasticStructureHandler.hpp,
	lifecore/Makefile.am, lifecore/NavierStokesAleHandler.hpp,
	lifecore/NavierStokesAleSolverPC.hpp,
	lifecore/NavierStokesHandler.hpp,
	lifecore/NavierStokesHandler_miguel.hpp,
	lifecore/NavierStokesSolverPC.hpp,
	lifecore/VenantKirchhofSolver.hpp,
	lifesolver/ElasticStructureHandler.hpp, lifesolver/Makefile.am,
	lifesolver/NavierStokesAleHandler.hpp,
	lifesolver/NavierStokesAleSolverPC.hpp,
	lifesolver/NavierStokesHandler.hpp,
	lifesolver/NavierStokesHandler_miguel.hpp,
	lifesolver/NavierStokesSolverPC.hpp,
	lifesolver/VenantKirchhofSolver.hpp:

	moved to lifesolver

2004-03-30 16:20  prudhomm

	* life/: Makefile.am, lifealg/Makefile.am,
	lifealg/mixed_pattern.hpp, lifealg/pattern.cpp,
	lifealg/pattern.hpp, lifecore/mixed_pattern.hpp,
	lifecore/pattern.cpp, lifecore/pattern.hpp:

	movec pattern.* amd mix_pattern.* from lifecore to lifealg

2004-03-30 15:45  prudhomm

	* life/: lifealg/Makefile.am, lifealg/cblas.h, lifealg/clapack.h,
	lifealg/inexactLU.hpp, lifealg/picard.hpp,
	lifealg/saddlePointCG.hpp, lifecore/cblas.h, lifecore/clapack.h,
	lifecore/inexactLU.hpp, lifecore/picard.hpp,
	lifecore/saddlePointCG.hpp:

	moved

	picard saddlePointCG cblas and clapack to lifealg/

2004-03-30 15:37  prudhomm

	* life/: lifecore/Makefile.am, lifefilters/Makefile.am:

	start moving files around

	RNM* --> lifearray *_wrtrs* --> lifefilters

2004-03-30 15:34  prudhomm

	* life/: lifealg/Makefile.am, lifearray/Makefile.am,
	lifearray/RNM.hpp, lifearray/RNM_op.hpp, lifearray/RNM_opc.hpp,
	lifearray/RNM_tpl.hpp, lifearray/dummy.cpp, lifecore/RNM.hpp,
	lifecore/RNM_op.hpp, lifecore/RNM_opc.hpp, lifecore/RNM_tpl.hpp,
	lifecore/gmsh_wrtrs.hpp, lifecore/medit_wrtrs.cpp,
	lifecore/medit_wrtrs.hpp, lifecore/openDX_wrtrs.hpp,
	lifecore/vtk_wrtrs.cpp, lifecore/vtk_wrtrs.hpp,
	lifefilters/Makefile.am, lifefilters/gmsh_wrtrs.hpp,
	lifefilters/medit_wrtrs.cpp, lifefilters/medit_wrtrs.hpp,
	lifefilters/openDX_wrtrs.hpp, lifefilters/vtk_wrtrs.cpp,
	lifefilters/vtk_wrtrs.hpp, lifesolver/Makefile.am:

	start moving files around

	RNM* --> lifearray *_wrtrs* --> lifefilters

2004-03-30 13:47  prudhomm

	* doc/common/: Makefile.am, .cvsignore:

	added

2004-03-30 13:43  prudhomm

	* NEWS, configure.in.in:

	bump up to 0.1.0 before branching

2004-03-30 13:41  prudhomm

	* NEWS:

	updated for 0.1.0pre5

2004-03-30 12:43  prudhomm

	* COPYING, admin/config.guess, admin/config.sub, doc/Makefile.am,
	doc/common/GPL, doc/common/LGPL, doc/manual/Makefile.am,
	doc/tex/Makefile.am:

	* updated admin/config.* * updated COPYING with links to GPL and
	LGPL licenses * added these licenses doc/common * fix lifev.bib
	location

2004-03-30 12:27  prudhomm

	* testsuite/: test_bdf/main.cpp, test_bdf/main.hpp,
	test_bdf/ud_functions.hpp, test_darcy/darcyHandler.cpp,
	test_darcy/darcyHandler.hpp, test_darcy/darcySolver.cpp,
	test_darcy/darcySolver.hpp, test_darcy/darcySolver_post.cpp,
	test_darcy/dataDarcy.cpp, test_darcy/dataDarcy.hpp,
	test_darcy/main.cpp, test_darcy/user_fct.cpp,
	test_darcy/user_fct.hpp, test_essentialbc/main.cpp,
	test_essentialbc/main.hpp, test_essentialbc/ud_functions.hpp,
	test_fe/build_pattern.cpp, test_fsi_newton/main.cpp,
	test_fsi_newton/norm.cpp, test_fsi_newton/norm.hpp,
	test_fsi_newton/operFS.cpp, test_fsi_newton/operFS.hpp,
	test_fsi_newton/ud_functions.hpp, test_fsi_picard/main.cpp,
	test_fsi_picard/norm.cpp, test_fsi_picard/norm.hpp,
	test_fsi_picard/operFS.hpp, test_fsi_picard/ud_functions.hpp,
	test_linearelasticity/main.cpp, test_linearelasticity/norm.cpp,
	test_linearelasticity/norm.hpp,
	test_linearelasticity/ud_functions.hpp, test_mesh/main.cpp,
	test_mixte/main.cpp, test_mixte/main.hpp,
	test_mixte/ud_functions.hpp, test_naturalbc/main.cpp,
	test_naturalbc/main.hpp, test_naturalbc/ud_functions.hpp,
	test_ns_bdf/main.cpp, test_ns_bdf/ud_functions.hpp,
	test_ns_cyl/main.cpp, test_ns_cyl/ud_functions.hpp,
	test_ns_sstress/main.cpp, test_ns_sstress/ud_functions.hpp,
	test_ns_sstress/ud_functions_ns.hpp, test_p2/main.cpp,
	test_p2/main.hpp, test_p2/ud_functions.hpp, test_postproc/main.cpp,
	test_postproc/main.hpp, test_postproc/ud_functions.hpp:

	testsuite/*.{hpp,cpp} are GPL and copyright is EPFL,INRIA,
	Politechnico

2004-03-30 12:25  prudhomm

	* COPYING, life/lifecore/ElasticStructureHandler.hpp,
	life/lifecore/GetPot.cpp, life/lifecore/GetPot.hpp,
	life/lifecore/NavierStokesAleHandler.hpp,
	life/lifecore/NavierStokesAleSolverPC.hpp,
	life/lifecore/NavierStokesHandler.hpp,
	life/lifecore/NavierStokesHandler_miguel.hpp,
	life/lifecore/NavierStokesSolverPC.hpp,
	life/lifecore/Operator01.hpp, life/lifecore/RNM.hpp,
	life/lifecore/RNM_op.hpp, life/lifecore/RNM_opc.hpp,
	life/lifecore/RNM_tpl.hpp, life/lifecore/SimpleVect.hpp,
	life/lifecore/VenantKirchhofSolver.hpp,
	life/lifecore/algebraic_facto.hpp, life/lifecore/assemb.cpp,
	life/lifecore/assemb.hpp, life/lifecore/bc_manage.hpp,
	life/lifecore/bdf.cpp, life/lifecore/bdf.hpp,
	life/lifecore/bdfNS.cpp, life/lifecore/bdfNS.hpp,
	life/lifecore/chrono.hpp, life/lifecore/dataAztec.cpp,
	life/lifecore/dataAztec.hpp,
	life/lifecore/dataElasticStructure.hpp, life/lifecore/dataMesh.hpp,
	life/lifecore/dataNavierStokes.hpp, life/lifecore/dataNewton.cpp,
	life/lifecore/dataNewton.hpp,
	life/lifecore/dataSimplifiedStructure.hpp,
	life/lifecore/dataString.cpp, life/lifecore/dataString.hpp,
	life/lifecore/dataTime.cpp, life/lifecore/dataTime.hpp,
	life/lifecore/elemMat.cpp, life/lifecore/elemMat.hpp,
	life/lifecore/elemVec.cpp, life/lifecore/elemVec.hpp,
	life/lifecore/fortran_wrap.hpp, life/lifecore/gmsh_wrtrs.hpp,
	life/lifecore/inexactLU.hpp, life/lifecore/lifeV.hpp,
	life/lifecore/linesearch_cubic.hpp,
	life/lifecore/linesearch_parabolic.hpp,
	life/lifecore/medit_wrtrs.cpp, life/lifecore/medit_wrtrs.hpp,
	life/lifecore/mixed_pattern.hpp, life/lifecore/newton.hpp,
	life/lifecore/openDX_wrtrs.hpp, life/lifecore/pattern.cpp,
	life/lifecore/pattern.hpp, life/lifecore/picard.hpp,
	life/lifecore/post_proc.hpp, life/lifecore/saddlePointCG.hpp,
	life/lifecore/simplifiedStructure.hpp,
	life/lifecore/subDomainNeighbors.cpp,
	life/lifecore/subDomainNeighbors.hpp, life/lifecore/switch.cpp,
	life/lifecore/switch.hpp, life/lifecore/tab.hpp,
	life/lifecore/util_string.cpp, life/lifecore/util_string.hpp,
	life/lifecore/values.cpp, life/lifecore/values.hpp,
	life/lifecore/variables.hpp, life/lifecore/vecUnknown.cpp,
	life/lifecore/vecUnknown.hpp, life/lifecore/vtk_wrtrs.cpp,
	life/lifecore/vtk_wrtrs.hpp, life/lifefem/currentBdFE.cpp,
	life/lifefem/currentBdFE.hpp, life/lifefem/currentFE.cpp,
	life/lifefem/currentFE.hpp, life/lifefem/currentHdivFE.cpp,
	life/lifefem/currentHdivFE.hpp, life/lifefem/defQuadRuleFE.cpp,
	life/lifefem/elemOper.cpp, life/lifefem/elemOper.hpp,
	life/lifefem/elemOper_ext.hpp, life/lifefem/geoMap.cpp,
	life/lifefem/geoMap.hpp, life/lifefem/localDofPattern.cpp,
	life/lifefem/localDofPattern.hpp, life/lifefem/quadRule.cpp,
	life/lifefem/quadRule.hpp, life/lifefem/refEle.cpp,
	life/lifefem/refEle.hpp, life/lifefem/refFE.cpp,
	life/lifefem/refFE.hpp, life/lifefem/refHdivFE.cpp,
	life/lifefem/refHdivFE.hpp, life/lifefem/refHybridFE.cpp,
	life/lifefem/refHybridFE.hpp, life/lifefem/sobolevNorms.hpp,
	life/lifefem/staticBdFE.cpp, life/lifefem/staticBdFE.hpp,
	testsuite/test_q1/main.cpp, testsuite/test_q1/main.hpp,
	testsuite/test_q1/ud_functions.hpp, life/lifemesh/bareItems.cpp,
	life/lifemesh/bareItems.hpp, life/lifemesh/basisElSh.cpp,
	life/lifemesh/basisElSh.hpp, life/lifemesh/bcCond.cpp,
	life/lifemesh/bcCond.hpp, life/lifemesh/bcVector.cpp,
	life/lifemesh/bcVector.hpp, life/lifemesh/dof.cpp,
	life/lifemesh/dof.hpp, life/lifemesh/dofInterface3Dto2D.cpp,
	life/lifemesh/dofInterface3Dto2D.hpp,
	life/lifemesh/dofInterface3Dto3D.cpp,
	life/lifemesh/dofInterface3Dto3D.hpp,
	life/lifemesh/dofInterfaceBase.cpp,
	life/lifemesh/dofInterfaceBase.hpp,
	life/lifemesh/dofInterfaceHandler.cpp,
	life/lifemesh/dofInterfaceHandler.hpp, life/lifemesh/geo0D.cpp,
	life/lifemesh/geo0D.hpp, life/lifemesh/geoElement.hpp,
	life/lifemesh/geoND.hpp, life/lifemesh/identifier.cpp,
	life/lifemesh/identifier.hpp, life/lifemesh/markers.hpp,
	life/lifemesh/markers_base.cpp, life/lifemesh/markers_base.hpp,
	life/lifemesh/meshEntity.hpp, life/lifemesh/meshMotion.cpp,
	life/lifemesh/meshMotion.hpp, life/lifemesh/mesh_util.cpp,
	life/lifemesh/mesh_util.hpp, life/lifemesh/mesh_util_base.cpp,
	life/lifemesh/mesh_util_base.hpp, life/lifemesh/readMesh2D.hpp,
	life/lifemesh/readMesh3D.cpp, life/lifemesh/readMesh3D.hpp,
	life/lifemesh/regionMesh2D.hpp, life/lifemesh/regionMesh3D.cpp,
	life/lifemesh/regionMesh3D.hpp:

	life/*.{hpp,cpp} are LGPL and copyright is EPFL,INRIA, Politechnico

2004-03-30 12:14  prudhomm

	* life/: lifecore/ElasticStructureHandler.hpp, lifecore/GetPot.cpp,
	lifecore/GetPot.hpp, lifecore/NavierStokesAleHandler.hpp,
	lifecore/NavierStokesAleSolverPC.hpp,
	lifecore/NavierStokesHandler.hpp,
	lifecore/NavierStokesHandler_miguel.hpp,
	lifecore/NavierStokesSolverPC.hpp, lifecore/Operator01.hpp,
	lifecore/RNM.hpp, lifecore/RNM_op.hpp, lifecore/RNM_opc.hpp,
	lifecore/RNM_tpl.hpp, lifecore/SimpleVect.hpp,
	lifecore/VenantKirchhofSolver.hpp, lifecore/algebraic_facto.hpp,
	lifecore/assemb.cpp, lifecore/assemb.hpp, lifecore/bc_manage.hpp,
	lifecore/bdf.cpp, lifecore/bdf.hpp, lifecore/bdfNS.cpp,
	lifecore/bdfNS.hpp, lifecore/chrono.hpp, lifecore/dataAztec.cpp,
	lifecore/dataAztec.hpp, lifecore/dataElasticStructure.hpp,
	lifecore/dataMesh.hpp, lifecore/dataNavierStokes.hpp,
	lifecore/dataNewton.cpp, lifecore/dataNewton.hpp,
	lifecore/dataSimplifiedStructure.hpp, lifecore/dataString.cpp,
	lifecore/dataString.hpp, lifecore/dataTime.cpp,
	lifecore/dataTime.hpp, lifecore/elemMat.cpp, lifecore/elemMat.hpp,
	lifecore/elemVec.cpp, lifecore/elemVec.hpp,
	lifecore/fortran_wrap.hpp, lifecore/gmsh_wrtrs.hpp,
	lifecore/inexactLU.hpp, lifecore/lifeV.hpp,
	lifecore/linesearch_cubic.hpp, lifecore/linesearch_parabolic.hpp,
	lifecore/medit_wrtrs.cpp, lifecore/medit_wrtrs.hpp,
	lifecore/mixed_pattern.hpp, lifecore/newton.hpp,
	lifecore/openDX_wrtrs.hpp, lifecore/pattern.cpp,
	lifecore/pattern.hpp, lifecore/picard.hpp, lifecore/post_proc.hpp,
	lifecore/saddlePointCG.hpp, lifecore/simplifiedStructure.hpp,
	lifecore/subDomainNeighbors.cpp, lifecore/subDomainNeighbors.hpp,
	lifecore/switch.cpp, lifecore/switch.hpp, lifecore/tab.hpp,
	lifecore/util_string.cpp, lifecore/util_string.hpp,
	lifecore/values.cpp, lifecore/values.hpp, lifecore/variables.hpp,
	lifecore/vecUnknown.cpp, lifecore/vecUnknown.hpp,
	lifecore/vtk_wrtrs.cpp, lifecore/vtk_wrtrs.hpp,
	lifefem/currentBdFE.cpp, lifefem/currentBdFE.hpp,
	lifefem/currentFE.cpp, lifefem/currentFE.hpp,
	lifefem/currentHdivFE.cpp, lifefem/currentHdivFE.hpp,
	lifefem/defQuadRuleFE.cpp, lifefem/elemOper.cpp,
	lifefem/elemOper.hpp, lifefem/elemOper_ext.hpp, lifefem/geoMap.cpp,
	lifefem/geoMap.hpp, lifefem/localDofPattern.cpp,
	lifefem/localDofPattern.hpp, lifefem/quadRule.cpp,
	lifefem/quadRule.hpp, lifefem/refEle.cpp, lifefem/refEle.hpp,
	lifefem/refFE.cpp, lifefem/refFE.hpp, lifefem/refHdivFE.cpp,
	lifefem/refHdivFE.hpp, lifefem/refHybridFE.cpp,
	lifefem/refHybridFE.hpp, lifefem/sobolevNorms.hpp,
	lifefem/staticBdFE.cpp, lifefem/staticBdFE.hpp,
	lifemesh/bareItems.cpp, lifemesh/bareItems.hpp,
	lifemesh/basisElSh.cpp, lifemesh/basisElSh.hpp,
	lifemesh/bcCond.cpp, lifemesh/bcCond.hpp, lifemesh/bcVector.cpp,
	lifemesh/bcVector.hpp, lifemesh/dof.cpp, lifemesh/dof.hpp,
	lifemesh/dofInterface3Dto2D.cpp, lifemesh/dofInterface3Dto2D.hpp,
	lifemesh/dofInterface3Dto3D.cpp, lifemesh/dofInterface3Dto3D.hpp,
	lifemesh/dofInterfaceBase.cpp, lifemesh/dofInterfaceBase.hpp,
	lifemesh/dofInterfaceHandler.cpp, lifemesh/dofInterfaceHandler.hpp,
	lifemesh/geo0D.cpp, lifemesh/geo0D.hpp, lifemesh/geoElement.hpp,
	lifemesh/geoND.hpp, lifemesh/identifier.cpp,
	lifemesh/identifier.hpp, lifemesh/markers.hpp,
	lifemesh/markers_base.cpp, lifemesh/markers_base.hpp,
	lifemesh/meshEntity.hpp, lifemesh/meshMotion.cpp,
	lifemesh/meshMotion.hpp, lifemesh/mesh_util.cpp,
	lifemesh/mesh_util.hpp, lifemesh/mesh_util_base.cpp,
	lifemesh/mesh_util_base.hpp, lifemesh/readMesh2D.hpp,
	lifemesh/readMesh3D.cpp, lifemesh/readMesh3D.hpp,
	lifemesh/regionMesh2D.hpp, lifemesh/regionMesh3D.cpp,
	lifemesh/regionMesh3D.hpp:

	lifev is now LGPL Library GNU Public License

2004-03-30 06:30  prudhomm

	* doc/manual/lifev-dev_generalities.tex:

	minor add \ref

2004-03-30 06:24  prudhomm

	* doc/manual/lifev-dev_generalities.tex:

	added documentation on testsuite and make check

2004-03-26 12:46  prudhomm

	* doc/tex/lifev.bib:

	doc/ -> documentation/

2004-03-26 12:39  prudhomm

	* doc/tex/lifev.bib:

	added some new entries FSI precond for NS

2004-03-26 11:44  prudhomm

	* doc/tex/lifev.bib:

	keep uppercase

2004-03-26 11:14  prudhomm

	* doc/: manual/life.bib, manual/lifev-dev.tex, tex/lifev.bib:

	moved biblio to tex/ and renamed it to lifev.bib

	added two entries

	* the LifeV project * the LifeV developer manual

2004-03-22 11:53  prudhomm

	* doc/manual/: .cvsignore, lifev-dev.kilepr:

	minor update

2004-03-22 11:53  prudhomm

	* NEWS:

	update NEWS to reflect the new version and the latest NEWS and bug
	fixed

2004-03-22 11:52  prudhomm

	* configure.in.in:

	bump up version to 0.1.0pre5 added --enable-debug and --enable-opt
	options to configure

2004-03-22 11:51  prudhomm

	* testsuite/: Makefile.testsuite, test_darcy/Makefile.am,
	test_darcy/data, test_fsi_newton/Makefile.am, test_fsi_newton/data,
	test_fsi_picard/Makefile.am, test_fsi_picard/data,
	test_linearelasticity/Makefile.am, test_linearelasticity/data,
	test_ns_bdf/Makefile.am, test_ns_bdf/data, test_ns_cyl/Makefile.am,
	test_ns_cyl/data, test_ns_sstress/Makefile.am,
	test_ns_sstress/data:

	fix data files to reflect to location of the meshes added a
	check-local rule to create the symlink in $(builddir) to
	$(srcdir)/data

2004-03-22 11:51  prudhomm

	* life/lifemesh/mesh_util.hpp:

	Memory loss fix delete pointer at end of block

2004-03-22 11:50  prudhomm

	* life/lifecore/algebraic_facto.hpp:

	changed NONSTANDARD coding  practice

	this code :

	int dim = <some quantity> double p1[dim];

	is a g++ extension and is non standard

	I replaced everything with std::vector<> which ensures proper
	deletion at end of block

	Also fix Bug #17

2004-03-19 10:45  lformaggia

	* testsuite/test_mesh/Makefile.am:

	added libg2c library at the linking step.

2004-03-19 10:15  prudhomm

	* doc/manual/: Makefile.am, lifev-dev_howto.tex:

	fixed indexing the development manual

2004-03-19 10:09  prudhomm

	* doc/: manual/Makefile.am, manual/lifev-dev.tex,
	manual/lifev-dev_generalities.tex, tex/lifestyle.cls:

	fixed indexing the development manual

2004-03-19 09:35  prudhomm

	* doc/manual/: Makefile.am, docfe.tex, jfg.tex, lifev-dev.tex,
	lifev-dev_howto.tex:

	created an HOWTO chapter in development manual(formerly docfe)
	removed jfg.tex

2004-03-19 09:07  prudhomm

	* doc/manual/: Makefile.am, lifev-dev.tex,
	lifev-dev_generalities.tex:

	update and fixes

	type 'make' to build the manual

2004-03-19 06:58  prudhomm

	* doc/tex/lifestyle.cls:

	\HUGE -> \Huge

2004-03-19 06:52  prudhomm

	* doc/manual/: lifev-dev.tex, lifev-dev_generalities.tex:

	\HUGE -> \Huge

2004-03-18 15:00  prosi

	* testsuite/data/: .cvsignore, mesh/.cvsignore,
	mesh/mesh++/.cvsignore:

	ignore Makefile by CVS they are automatically generated by
	configure do not put them in CVS

2004-03-18 14:58  prosi

	* testsuite/data/mesh/inria/: .cvsignore, README,
	flowatch-fine-0-percent.mesh, flowatch-medium-0-percent.mesh,
	flowatch-short-0-percent.mesh:

	added new geometries for clipped artery (flowatch) added README for
	triavial description ignore Makefile by CVS

2004-03-18 11:39  prudhomm

	* NEWS, doc/manual/Makefile.am,
	testsuite/test_essentialbc/Makefile.am,
	testsuite/test_mesh/Makefile.am:

	0.1.0pre4 est dans les bacs

2004-03-18 09:04  prudhomm

	* life/lifecore/Makefile.am:

	added clapack.h and cblas.h to include_HEADERS they must be
	installed for proper compilation

2004-03-18 08:18  prudhomm

	* testsuite/Makefile.am:

	removed test_rt and test_rtcyl: they do not compile

2004-03-18 08:18  prudhomm

	* testsuite/: test_rt_comp.qmt, test_rt_exec.qmt, test_rt_resu.qmt,
	test_rtcyl_comp.qmt, test_rtcyl_exec.qmt, test_rtcyl_resu.qmt:

	moved to sandbox: they do not compile

2004-03-18 08:15  prudhomm

	* NEWS, configure.in.in:

	updated NEWS for 0.1.0pre4

	-I and -D g++ option are for the preprocessor so add them to
	CPPFLAGS instead of CXXFLAGS

2004-03-18 08:14  prudhomm

	* testsuite/test_darcy/Makefile.am:

	no more empty dir Post

2004-03-18 08:03  prudhomm

	* testsuite/: Makefile.am, data/mesh/inria/tube2x4x20.mesh,
	data/mesh/inria/tube_curve20.mesh,
	data/mesh/inria/vessel2x4x20.mesh,
	data/mesh/inria/vessel_curve20.mesh, test_fsi_newton/.cvsignore,
	test_fsi_newton/Makefile.am, test_fsi_newton/data,
	test_fsi_newton/main.cpp, test_fsi_newton/norm.cpp,
	test_fsi_newton/norm.hpp, test_fsi_newton/operFS.cpp,
	test_fsi_newton/operFS.hpp, test_fsi_newton/ud_functions.hpp,
	test_fsi_picard/.cvsignore, test_fsi_picard/Makefile.am,
	test_fsi_picard/data, test_fsi_picard/main.cpp,
	test_fsi_picard/norm.cpp, test_fsi_picard/norm.hpp,
	test_fsi_picard/operFS.hpp, test_fsi_picard/ud_functions.hpp:

	added test_fsi_{newton,picard} moved meshes to mesh/inria

2004-03-18 07:53  prudhomm

	* testsuite/Makefile.am:

	development shall disappear

2004-03-18 07:46  prudhomm

	* testsuite/: Makefile.am, data/mesh/mesh++/cyl_coarse.mesh++,
	data/mesh/mesh++/cyl_fine.mesh++,
	data/mesh/mesh++/cylverycoarse.mesh++, test_ns_bdf/.cvsignore,
	test_ns_bdf/Makefile.am, test_ns_bdf/data, test_ns_bdf/main.cpp,
	test_ns_bdf/ud_functions.hpp, test_ns_cyl/.cvsignore,
	test_ns_cyl/Makefile.am, test_ns_cyl/data, test_ns_cyl/main.cpp,
	test_ns_cyl/test.out, test_ns_cyl/ud_functions.hpp,
	test_ns_sstress/.cvsignore, test_ns_sstress/Makefile.am,
	test_ns_sstress/data, test_ns_sstress/main.cpp,
	test_ns_sstress/ud_functions.hpp,
	test_ns_sstress/ud_functions_ns.hpp:

	moved development/NavvierStokes/{testBDF,testcyl,testSStress} to
	test_ns_cyl test_ns_sstress test_ns_bdf

	Rationale: they compile and run properly

	avoid to duplicate meshes moved them to data/mesh/

2004-03-18 07:36  prudhomm

	* testsuite/test_darcy/: .cvsignore, Makefile.am, darcyHandler.cpp,
	darcyHandler.hpp, darcySolver.cpp, darcySolver.hpp,
	darcySolver_post.cpp, data, dataDarcy.cpp, dataDarcy.hpp, main.cpp,
	user_fct.cpp, user_fct.hpp:

	moved testsuite/development/darcySolver to testsuite/test_darcy

2004-03-18 07:27  prudhomm

	* life/: lifecore/Makefile.am, lifemesh/Makefile.am:

	removed -DTHREEDIM configure takes care of it

2004-03-18 06:57  lformaggia

	* testsuite/test_mesh/Makefile.am:

	Added -lg2c to the linker flags

2004-03-18 06:56  lformaggia

	* life/lifemesh/regionMesh3D.hpp:

	Corrected bugs #8 and bugs #9

2004-03-18 06:55  lformaggia

	* life/lifecore/SimpleVect.hpp:

	Added to SimpleVect and SimpleArray classes the method	void
	clean() that actually clens up the container releasing memory to
	the system, using the trick explained in More Exceptional C++ by
	Sutter.

2004-03-10 16:30  prudhomm

	* configure.in.in:

	fix typo

2004-03-10 16:26  prudhomm

	* configure.in.in:

	fix typo

2004-03-10 16:25  prudhomm

	* configure.in.in:

	I guess I am using always version that are too new

2004-03-10 16:13  prudhomm

	* configure.in.in, life.kdevelop, doc/manual/lifev-dev.kilepr:

	life is cool ;)

	added feature to configure: --with-aztec=[LOC] where [LOC] is the
	location where you installed aztec

	for example  in debug mode if you installed aztec in $HOME/aztec

	CXXFLAGS="-g3 -O0" configure --with-aztec=$HOME/aztec

	lifev will be configured to find aztec headers (resp. libs) in
	$HOME/aztec/include (resp. $HOME/aztec/lib)

	happy coding!

2004-03-08 15:07  prudhomm

	* doc/manual/: .cvsignore, lifev-dev.kilepr, lifev-dev.tex,
	lifev-dev_generalities.tex:

	update manual with some compilation instructions

2004-03-08 15:06  prudhomm

	* doc/tex/: .cvsignore, lifestyle.cls:

	update added some macros

2004-03-08 10:03  prudhomm

	* doc/manual/: .cvsignore, Makefile.am, Specifications.tex,
	lifev-dev.kilepr, lifev-dev.tex, lifev-dev_conventions.tex,
	lifev-dev_generalities.tex, lifev-dev_overview.tex:

	work on documentation: * split chapters into files for easier
	maintenance * minor update on CVS comment

2004-03-08 09:08  prudhomm

	* life/lifecore/cblas.h:

	use F77NAME from fortran_wrap cleaned up the extra #defines include
	fortran_wrap

2004-03-08 09:07  prudhomm

	* life/lifecore/clapack.h:

	use F77NAME() fron fortran_wrap.h include "cblas.h"

2004-03-03 08:11  prudhomm

	* life/lifecore/: cblas.h, clapack.h:

	added cblas for declaration of _all_ blas routines (all 3 levels)

2004-03-03 08:08  prudhomm

	* life/lifecore/clapack.h:

	added decalaration of _all_ lapack routines.

2004-03-03 08:07  prudhomm

	* life/lifecore/fortran_wrap.hpp:

	standardified wrt C++

2004-03-02 09:41  prudhomm

	* admin/cvs.sh:

	fix Bug #3 added check on libtool >= 1.5

2004-03-01 08:07  prudhomm

	* testsuite/Makefile.am:

	add qmtest run and summarize

2004-02-26 08:19  prudhomm

	* NEWS:

	updated

2004-02-26 08:19  prudhomm

	* testsuite/: test_linearelasticity_comp.qmt,
	test_linearelasticity_exec.qmt, test_linearelasticity_resu.qmt,
	test_linearelasticity/Makefile.am, test_linearelasticity/data:

	added test_linearelasticy to qmtest changed maxiter to 10 instead
	of 300

2004-02-26 08:19  prudhomm

	* life/lifecore/lifeV.hpp:

	cleanup

2004-02-26 08:11  prudhomm

	* testsuite/test_linearelasticity/: .cvsignore, Makefile.am, data,
	main.cpp, norm.cpp, norm.hpp, ud_functions.hpp,
	vessel2x4x20_10cm.mesh:

	added test_linearelasticity

	it compiles

2004-02-25 15:35  prudhomm

	* life/lifecore/Makefile.am, testsuite/Makefile.am,
	testsuite/test_essentialbc/main.hpp:

	ALL TESTS in testsuite compile	except test_rt and test_rtcyl the
	author of these two tests should have a look !!

2004-02-25 15:31  prudhomm

	* testsuite/test_fe/build_pattern.cpp:

	c++ standardify this file

	using std:: where needed and other minor things

2004-02-25 15:19  prudhomm

	* NEWS, configure.in.in:

	bump up the version to 0.1.0pre4 updated NEWS file

2004-02-25 15:16  prudhomm

	* life/lifecore/: lifeV.hpp, SimpleVect.hpp, dataNewton.cpp,
	dataNewton.hpp, dataTime.cpp, dataTime.hpp, tab.hpp:

	cleanup in lifecore:

	* NO MORE using namespace std; in lifeV.hpp !!!!!!!!!!11

	* use std:: namespace to ensure proper name resolution * use
	std::make_pair instead of calling constructor directly

2004-02-25 15:15  prudhomm

	* life/lifefem/: localDofPattern.cpp, quadRule.cpp, quadRule.hpp:

	cleanup in lifefem:

	* use std:: namespace to ensure proper name resolution * use
	std::make_pair instead of calling constructor directly

2004-02-25 15:10  prudhomm

	* life/lifemesh/: bareItems.cpp, bareItems.hpp, dof.cpp, dof.hpp:

	cleanup in lifemesh:

	* use std:: namespace to ensure proper name resolution * use
	std::make_pair instead of calling constructor directly

2004-02-25 14:52  prudhomm

	* life/lifecore/lifeV.hpp:

	use std:: namespace to ensure proper name resolution

2004-02-25 08:52  prudhomm

	* testsuite/: test_fe_comp.qmt, test_fe_exec.qmt, test_fe_resu.qmt,
	test_p2_comp.qmt, test_p2_exec.qmt, test_p2_resu.qmt,
	test_postproc_comp.qmt, test_postproc_exec.qmt,
	test_postproc_resu.qmt, test_q1_comp.qmt, test_q1_exec.qmt,
	test_q1_resu.qmt, test_rt_comp.qmt, test_rt_exec.qmt,
	test_rt_resu.qmt, test_rtcyl_comp.qmt, test_rtcyl_exec.qmt,
	test_rtcyl_resu.qmt, test_p2/Makefile.am, test_postproc/main.cpp,
	test_q1/Makefile.am:

	more tests in the testsuite and they almost all compile and execute
	results are not yet there

2004-02-25 08:33  prudhomm

	* testsuite/: test_mixte_comp.qmt, test_mixte_exec.qmt,
	test_mixte_resu.qmt, test_fe/.cvsignore, test_fe/Makefile.am,
	test_fe/build_pattern.cpp, test_p2/.cvsignore, test_p2/Makefile.am,
	test_p2/main.cpp, test_p2/main.hpp, test_p2/ud_functions.hpp,
	test_postproc/.cvsignore, test_postproc/Makefile.am,
	test_postproc/main.cpp, test_postproc/main.hpp,
	test_postproc/ud_functions.hpp, test_q1/.cvsignore,
	test_q1/Makefile.am, test_q1/main.cpp, test_q1/main.hpp,
	test_q1/ud_functions.hpp:

	no more uppercase added more tests

2004-02-25 07:54  prudhomm

	* testsuite/test_mixte/main.cpp:

	correct path for meshes

2004-02-25 07:50  prudhomm

	* testsuite/: test_bdf_comp.qmt, test_bdf_exec.qmt,
	test_bdf_resu.qmt, test_bdf/.cvsignore, test_bdf/Makefile.am,
	test_bdf/main.cpp, test_bdf/main.hpp, test_bdf/main_sample.out,
	test_bdf/ud_functions.hpp, test_mixte/.cvsignore,
	test_mixte/Makefile.am, test_mixte/main.cpp, test_mixte/main.hpp,
	test_mixte/ud_functions.hpp:

	moved to testsuite/ for automatic testing using qmtest

2004-02-25 07:31  prudhomm

	* testsuite/: expectations.qmr, gentest.sh, run.sh,
	test_essentialbc_comp.qmt, test_essentialbc_exec.qmt,
	test_essentialbc_resu.qmt, test_matrix_comp.qmt,
	test_matrix_exec.qmt, test_matrix_resu.qmt, test_mesh_comp.qmt,
	test_mesh_exec.qmt, test_mesh_resu.qmt, test_naturalbc_comp.qmt,
	test_naturalbc_exec.qmt, test_naturalbc_resu.qmt:

	all tests PASS except *_resu

2004-02-24 16:35  prudhomm

	* testsuite/: test_essentialbc/main.cpp, test_mesh/main.cpp,
	test_naturalbc/main.cpp:

	correct path to mesh files

2004-02-24 16:14  prudhomm

	* testsuite/test_essentialbc_comp.qmt, admin/.cvsignore,
	doc/tex/.cvsignore, life/.cvsignore, life/lifecore/.cvsignore,
	life/lifefem/.cvsignore, life/lifemesh/.cvsignore:

	ignore files update essentialbc compilation test

2004-02-24 15:31  prudhomm

	* testsuite/Makefile.am:

	added check-qmtest rule

2004-02-24 15:30  prudhomm

	* testsuite/: Makefile.testsuite, data/.cvsignore,
	data/mesh/.cvsignore, data/mesh/inria/.cvsignore,
	data/mesh/mesh++/.cvsignore, test_essentialbc/Makefile.am,
	test_mesh/Makefile.am, test_naturalbc/Makefile.am:

	updated all Makefile.am in testsuite

2004-02-24 15:28  prudhomm

	* testsuite/: test_essentialbc_comp.qmt, test_matrix_comp.qmt,
	test_mesh_comp.qmt, test_naturalbc_comp.qmt:

	added qmtest environment see http://www.codesourcery.com/qm/qmtest

	extremely powerful and easy to use

2004-02-24 15:20  prudhomm

	* testsuite/Makefile.am:

	updated

2004-02-24 15:19  prudhomm

	* testsuite/: Makefile.testsuite, README,
	test_essentialbc/.cvsignore, test_essentialbc/Makefile.am,
	test_essentialbc/main.cpp, test_essentialbc/main.hpp,
	test_essentialbc/main_sample.out,
	test_essentialbc/ud_functions.hpp, test_mesh/.cvsignore,
	test_mesh/Makefile.am, test_mesh/main.cpp,
	test_mesh/testBuilders_sample.out, test_naturalbc/.cvsignore,
	test_naturalbc/Makefile.am, test_naturalbc/main.cpp,
	test_naturalbc/main.hpp, test_naturalbc/main_sample.out,
	test_naturalbc/ud_functions.hpp:

	moved testsuite/official to testsuite to simplify the automatic
	testing

2004-02-24 15:10  prudhomm

	* life/: lifefem/currentFE.cpp, lifemesh/mesh_util.hpp:

	get rid of some output

2004-02-24 14:38  prudhomm

	* life/lifecore/assemb.hpp:

	fix compilation bis : cast to int when calling compute_vec this
	needs to be cleaned up

2004-02-24 14:32  prudhomm

	* life/lifecore/assemb.hpp:

	fix  compilation warning: use uint

2004-02-24 14:01  prudhomm

	* ChangeLog:

	update ChangeLog

2004-02-24 13:28  prudhomm

	* life/: lifecore/GetPot.cpp, lifecore/GetPot.hpp,
	lifecore/SimpleVect.hpp, lifecore/algebraic_facto.hpp,
	lifecore/chrono.hpp, lifecore/elemVec.hpp, lifecore/lifeV.hpp,
	lifecore/pattern.hpp, lifecore/values.hpp, lifemesh/bareItems.hpp,
	lifemesh/basisElSh.hpp, lifemesh/markers.hpp,
	lifemesh/markers_base.cpp, lifemesh/markers_base.hpp:

	get rid of $Id$ and $Log$ tags that cause enormous troubles:
	conflicts,...

2004-02-21 08:29  prudhomm

	* AUTHORS, NEWS, README, configure.in.in,
	testsuite/data/mesh/inria/Makefile.am,
	testsuite/data/mesh/mesh++/Makefile.am:

	forgot to commit those files for 0.1.0pre3

	don't forget that lifev CVS is on iacspc50.epfl.ch

2004-02-20 05:56  prudhomm

	* admin/: Makefile.am, Makefile.common, ac_find_file.m4,
	config.guess, config.sub, configure.in.bot.end, configure.in.min,
	cvs-clean.pl, cvs.sh, depcomp, detect-autoconf.sh, install-sh,
	ltmain.sh, missing, mkinstalldirs:

	Initial revision

2004-02-20 05:56  prudhomm

	* admin/: Makefile.am, Makefile.common, ac_find_file.m4,
	config.guess, config.sub, configure.in.bot.end, configure.in.min,
	cvs-clean.pl, cvs.sh, depcomp, detect-autoconf.sh, install-sh,
	ltmain.sh, missing, mkinstalldirs:

	import

2004-02-18 08:49  prudhomm

	* testsuite/: Makefile.am, data/Makefile.am, data/mesh/Makefile.am,
	data/mesh/inria/Makefile.am, data/mesh/mesh++/Makefile.am:

	added data to build system

2004-02-18 07:43  prudhomm

	* testsuite/.cvsignore:

	ignore

2004-02-13 09:59  prudhomm

	* .cvsignore, ChangeLog, Makefile.am, configure.in.in,
	life.kdevelop, life/lifecore/Makefile.am, life/lifecore/RNM.hpp,
	life/lifecore/dataNewton.hpp, life/lifecore/lifeV.hpp,
	life/lifecore/tab.hpp, life/lifefem/Makefile.am,
	life/lifefem/currentFE.cpp, life/lifemesh/mesh_util.hpp,
	testsuite/Makefile.am:

	many fixes, see ChangeLog

	* bump the version to 0.1.0pre2 * fix some configure problem with
	aztec * cleanup in various places * math.h -> cmath * compilation
	fixes in testsuite * use data/mesh to get the meshses in testsuite
	and not Meshes anymore

2004-02-08 09:53  prudhomm

	* testsuite/data/mesh/mesh++/makefile:

	removed old makefile files

2004-02-08 09:25  prudhomm

	* testsuite/: Makefile.am, data/mesh/.cvsignore,
	data/mesh/inria/.cvsignore, data/mesh/inria/cube_384.mesh,
	data/mesh/inria/cube_6007.mesh, data/mesh/inria/cylhexa.mesh,
	data/mesh/inria/cyltetra.mesh, data/mesh/mesh++/.cvsignore,
	data/mesh/mesh++/cintot.m, data/mesh/mesh++/cintot_ext.m,
	data/mesh/mesh++/cube_384.m++, data/mesh/mesh++/cube_47785.m++,
	data/mesh/mesh++/cube_48.m++, data/mesh/mesh++/cube_48000.m++,
	data/mesh/mesh++/cube_48_neumann.m++, data/mesh/mesh++/cube_59.m++,
	data/mesh/mesh++/cube_6.m++, data/mesh/mesh++/cube_6000.m++,
	data/mesh/mesh++/cube_6007.m++, data/mesh/mesh++/cube_750.m++,
	data/mesh/mesh++/cube_99.m++, data/mesh/mesh++/makefile,
	data/mesh/mesh++/mod_mesh.m++, data/mesh/mesh++/simplemesh.m++:

	added testsuite

	testsuite/data contains some general data like meshes
	testsuite/official contains the official for LifeV that should work
	at all times testsuite/development contains development tests for
	the latest features

2004-02-08 09:09  prudhomm

	* life/: lifemesh/Makefile.am, lifemesh/bareItems.cpp,
	lifemesh/bareItems.hpp, lifemesh/basisElSh.cpp,
	lifemesh/basisElSh.hpp, lifemesh/bcCond.cpp, lifemesh/bcCond.hpp,
	lifemesh/bcVector.cpp, lifemesh/bcVector.hpp, lifemesh/dof.cpp,
	lifemesh/dof.hpp, lifemesh/dofInterface3Dto2D.cpp,
	lifemesh/dofInterface3Dto2D.hpp, lifemesh/dofInterface3Dto3D.cpp,
	lifemesh/dofInterface3Dto3D.hpp, lifemesh/dofInterfaceBase.cpp,
	lifemesh/dofInterfaceBase.hpp, lifemesh/dofInterfaceHandler.cpp,
	lifemesh/dofInterfaceHandler.hpp, lifemesh/geo0D.cpp,
	lifemesh/geo0D.hpp, lifemesh/geoElement.hpp, lifemesh/geoND.hpp,
	lifemesh/identifier.cpp, lifemesh/identifier.hpp,
	lifemesh/markers.hpp, lifemesh/markers_base.cpp,
	lifemesh/markers_base.hpp, lifemesh/meshEntity.hpp,
	lifemesh/meshMotion.cpp, lifemesh/meshMotion.hpp,
	lifemesh/mesh_util.cpp, lifemesh/mesh_util.hpp,
	lifemesh/mesh_util_base.cpp, lifemesh/mesh_util_base.hpp,
	lifemesh/readMesh2D.hpp, lifemesh/readMesh3D.cpp,
	lifemesh/readMesh3D.hpp, lifemesh/regionMesh2D.hpp,
	lifemesh/regionMesh3D.cpp, lifemesh/regionMesh3D.hpp,
	lifefem/Makefile.am, lifefem/currentBdFE.cpp,
	lifefem/currentBdFE.hpp, lifefem/currentFE.cpp,
	lifefem/currentFE.hpp, lifefem/currentHdivFE.cpp,
	lifefem/currentHdivFE.hpp, lifefem/defQuadRuleFE.cpp,
	lifefem/elemOper.cpp, lifefem/elemOper.hpp,
	lifefem/elemOper_ext.hpp, lifefem/geoMap.cpp, lifefem/geoMap.hpp,
	lifefem/localDofPattern.cpp, lifefem/localDofPattern.hpp,
	lifefem/quadRule.cpp, lifefem/quadRule.hpp, lifefem/refEle.cpp,
	lifefem/refEle.hpp, lifefem/refFE.cpp, lifefem/refFE.hpp,
	lifefem/refHdivFE.cpp, lifefem/refHdivFE.hpp,
	lifefem/refHybridFE.cpp, lifefem/refHybridFE.hpp,
	lifefem/sobolevNorms.hpp, lifefem/staticBdFE.cpp,
	lifefem/staticBdFE.hpp, lifecore/ElasticStructureHandler.hpp,
	lifecore/GetPot.cpp, lifecore/GetPot.hpp, lifecore/Makefile.am,
	lifecore/NavierStokesAleHandler.hpp,
	lifecore/NavierStokesAleSolverPC.hpp,
	lifecore/NavierStokesHandler.hpp,
	lifecore/NavierStokesHandler_miguel.hpp,
	lifecore/NavierStokesSolverPC.hpp, lifecore/Operator01.hpp,
	lifecore/RNM.hpp, lifecore/RNM_op.hpp, lifecore/RNM_opc.hpp,
	lifecore/RNM_tpl.hpp, lifecore/SimpleVect.hpp,
	lifecore/VenantKirchhofSolver.hpp, lifecore/algebraic_facto.hpp,
	lifecore/assemb.cpp, lifecore/assemb.hpp, lifecore/bc_manage.hpp,
	lifecore/bdf.cpp, lifecore/bdf.hpp, lifecore/bdfNS.cpp,
	lifecore/bdfNS.hpp, lifecore/chrono.hpp, lifecore/dataAztec.cpp,
	lifecore/dataAztec.hpp, lifecore/dataElasticStructure.hpp,
	lifecore/dataMesh.hpp, lifecore/dataNavierStokes.hpp,
	lifecore/dataNewton.cpp, lifecore/dataNewton.hpp,
	lifecore/dataSimplifiedStructure.hpp, lifecore/dataString.cpp,
	lifecore/dataString.hpp, lifecore/dataTime.cpp,
	lifecore/dataTime.hpp, lifecore/elemMat.cpp, lifecore/elemMat.hpp,
	lifecore/elemVec.cpp, lifecore/elemVec.hpp,
	lifecore/fortran_wrap.hpp, lifecore/gmsh_wrtrs.hpp,
	lifecore/inexactLU.hpp, lifecore/lifeV.hpp,
	lifecore/linesearch_cubic.hpp, lifecore/linesearch_parabolic.hpp,
	lifecore/medit_wrtrs.cpp, lifecore/medit_wrtrs.hpp,
	lifecore/mixed_pattern.hpp, lifecore/newton.hpp,
	lifecore/openDX_wrtrs.hpp, lifecore/pattern.cpp,
	lifecore/pattern.hpp, lifecore/picard.hpp, lifecore/post_proc.hpp,
	lifecore/saddlePointCG.hpp, lifecore/simplifiedStructure.hpp,
	lifecore/subDomainNeighbors.cpp, lifecore/subDomainNeighbors.hpp,
	lifecore/switch.cpp, lifecore/switch.hpp, lifecore/tab.hpp,
	lifecore/util_string.cpp, lifecore/util_string.hpp,
	lifecore/values.cpp, lifecore/values.hpp, lifecore/variables.hpp,
	lifecore/vecUnknown.cpp, lifecore/vecUnknown.hpp,
	lifecore/vtk_wrtrs.cpp, lifecore/vtk_wrtrs.hpp, Makefile.am:

	finally added the new life libraries layout

	life/lifecore core library life/lifemesh mesh library life/lifefem
	fem library

	more to come in the future

2004-02-08 09:05  prudhomm

	* .cvsignore, AUTHORS, COPYING, ChangeLog, INSTALL, Makefile.am,
	Makefile.cvs, NEWS, configure.in.bot, configure.in.in,
	configure.in.mid, life.kdevelop:

	update toplevel LifeV directory

	added configure.in script added life.kdevelop to use LifeV in
	kdevelop

	updated admin/ with aa lot of new powerful tools

2004-02-08 08:54  prudhomm

	* doc/: .cvsignore, Makefile.am, manual/.cvsignore,
	manual/BCCond.eps, manual/BCCond.fig, manual/BCCond.pdf,
	manual/BCHandler.eps, manual/BCHandler.fig, manual/BCHandler.pdf,
	manual/BasElSha.eps, manual/BasElSha.fig, manual/BasElSha.pdf,
	manual/Directories_Organization, manual/Fem_nodes.eps,
	manual/Fem_nodes.fig, manual/Fem_nodes.pdf, manual/Fem_nodes.ps,
	manual/Makefile.am, manual/NSCode_mesh_types.eps,
	manual/NSCode_mesh_types.kpr, manual/NSCode_mesh_types.pdf,
	manual/Specifications.tex, manual/boundary_conditions.ps,
	manual/doc_menu.ps, manual/docfe.tex, manual/jfg.tex,
	manual/letter_Jan_2000.txt, manual/life.bib, manual/lsc_page.html,
	manual/mixed_pattern.eps, manual/mixed_pattern.fig,
	manual/mixed_pattern.pdf, manual/theFE.eps, manual/theFE.fig,
	manual/theFE.pdf, notes/.cvsignore, notes/Makefile.am,
	notes/bdf_notes_alex_oct_03.txt, notes/doxy_comment.tex,
	notes/letter_changes_ott03.txt, tex/Makefile.am, tex/lifestyle.cls,
	tex/rcs.sty:

	documentation is now in doc/

	doc/manual is the LifeV developer manual doc/notes contains some
	notes on LifeV doc/tex some TeX style files by me(CP)

	Christophe Prud'homme

2004-01-29 15:35  prudhomm

	* life/: lifecore/GetPot.cc, lifecore/GetPot.h,
	lifecore/NavierStokesSolverPC.h, lifecore/SimpleVect.h,
	lifecore/algebraic_facto.h, lifecore/chrono.h,
	lifecore/dataNavierStokes.h, lifecore/elemVec.h,
	lifecore/fortran_wrap.h, lifecore/lifeV.h,
	lifecore/mixed_pattern.h, lifecore/pattern.h, lifecore/values.h,
	lifefem/localDofPattern.cc, lifefem/localDofPattern.h,
	lifefem/refFE.cc, lifefem/refFE.h, lifefem/refHdivFE.cc,
	lifefem/refHdivFE.h, lifefem/refHybridFE.cc, lifefem/refHybridFE.h,
	lifemesh/bareItems.h, lifemesh/basisElSh.h, lifemesh/bcCond.h,
	lifemesh/dof.cc, lifemesh/dof.h, lifemesh/dofInterface3Dto2D.cc,
	lifemesh/dofInterface3Dto2D.h, lifemesh/dofInterface3Dto3D.h,
	lifemesh/dofInterfaceBase.cc, lifemesh/dofInterfaceBase.h,
	lifemesh/dofInterfaceHandler.cc, lifemesh/dofInterfaceHandler.h,
	lifemesh/geoElement.h, lifemesh/markers.h,
	lifemesh/markers_base.cc, lifemesh/markers_base.h,
	lifemesh/mesh_util.cc, lifemesh/mesh_util.h,
	lifemesh/mesh_util_base.cc, lifemesh/mesh_util_base.h,
	lifemesh/regionMesh2D.h, lifemesh/regionMesh3D.h:

	sync with Software/src

2003-12-02 08:42  prudhomm

	* configure.ac:

	* added OFFICIAL_TESTS in configure.ac * merged changes from JF and
	Vincent (docInterface*)

2003-11-13 11:15  prudhomm

	* doc/tex/lifereport.cls:

	moved to lifestyle

2003-11-13 11:09  prudhomm

	* doc/tex/lifestyle.cls:

	moved lifereport to lifestyle

	lifestyle allows to write articles and reports by passing the
	option article or report as an parameter

	one can use the options of these classes one can use the parameter
	option toc to create a table of contexts

2003-11-13 10:00  prudhomm

	* doc/tex/rcs.sty:

	added rcs.sty

2003-11-12 18:31  prudhomm

	* Makefile.am, configure.ac:

	update with HEAD and fixe compilation

2003-11-12 17:45  prudhomm

	* configure.ac:

	update with HEAD

2003-10-29 17:19  forma

	* doc/.cvsignore, doc/manual/.cvsignore, doc/notes/.cvsignore,
	life/.cvsignore, life/lifecore/.cvsignore, life/lifefem/.cvsignore:

	Ignoring autoconf generated Makefiles.

2003-10-29 17:16  forma

	* life/lifemesh/markers_base.cc:

	Corrected a little bug introduced by xemacs ....

2003-10-29 17:12  forma

	* configure.ac:

	now finding aztec works

2003-10-29 16:51  prudhomm

	* configure.ac:

	bugfix for mox/epfl repository system

2003-10-29 14:01  forma

	* README:

	README file for the new release of LifeV.

2003-10-29 13:02  prudhomm

	* LifeV.kdevelop, Makefile.am, configure.ac,
	doc/manual/Specifications.tex:

	* minor mods * some minor changes in manual

2003-10-29 11:55  prudhomm

	* doc/: manual/Specifications.tex, tex/lifereport.cls:

	do not use the draft option for report it fails horribly

2003-10-29 11:46  prudhomm

	* doc/: .cvsignore, Makefile.am, manual/.cvsignore,
	manual/Specifications.tex, manual/life.bib, tex/lifereport.cls:

	* added tex directory for macros : lifereport style file is in *
	added Saad bibtex entry * updated manual

2003-10-29 11:17  prudhomm

	* doc/: manual/.cvsignore, notes/.cvsignore, notes/Makefile.am:

	* added Makefile.am for automake * ignore automatically generated
	files (e.g Makefile Makefile.in)

2003-10-29 11:03  prudhomm

	* doc/manual/: BCCond.pdf, BCHandler.pdf, BasElSha.pdf,
	Fem_nodes.pdf, Makefile.am, NSCode_mesh_types.pdf,
	Specifications.tex, life.bib, mixed_pattern.pdf, theFE.pdf:

	manual changes:

	* can use pdflatex: converted all eps to pdf * use lifereport style
	to get "standardize" life related reports   in the future * added
	bibliography: life.bib * added index (\ix{word} to write and index
	work see lifereport.cls)

2003-10-29 09:08  prudhomm

	* life/lifecore/: GetPot.cc, GetPot.h, SimpleVect.h,
	algebraic_facto.h, chrono.h, elemVec.h, fortran_wrap.h, lifeV.h,
	pattern.h, values.h:

	get rid of CVS Identifiers like $Id$ and $Log$ they change the
	source code _after_ a commit : the code will then be recompiled by
	make which is a waste of time

2003-10-29 08:58  prudhomm

	* life/lifemesh/: basisElSh.h, markers.h:

	get rid of CVS Identifiers like $Id$ and $Log$ they change the
	source code _after_ a commit : the code will then be recompiled by
	make which is a waste of time

2003-10-29 08:53  prudhomm

	* life/lifemesh/: bareItems.h, markers_base.cc, markers_base.h,
	mesh_util_base.cc:

	get rid of CVS Identifiers like $Id$ and $Log$ they change the
	source code _after_ a commit : the code will then be recompiled by
	make which is a waste of time

2003-10-29 08:43  prudhomm

	* .cvsignore, LifeV.kdevelop, Makefile.cvs, configure.ac,
	life/.cvsignore, life/lifecore/Makefile.am,
	life/lifefem/.cvsignore, life/lifefem/Makefile.am:

	minor cleanups:

	* ignore some automatically generated files   typically Makefile
	and Makefile.in * fixes in Makefile.am to ensure proper include
	dependencies   THIS WILL NEED CLEANUP IN THE FUTURE: EVERY
	LIBRARIES DEPEND   ON THE OTHER ONES

2003-10-29 08:13  prudhomm

	* life/lifemesh/: Makefile.am, mesh_util.cc, mesh_util_base.cc,
	mesh_util_base.h:

	removed redundant code that caused multiple definitions in
	liblifemesh.la.  now everything compiles nicely

2003-10-28 13:07  prudhomm

	* .cvsignore, Doxyfile, LifeV.kdevelop, Makefile.am:

	minor update * update SUBDIRS to accomodate the new directory
	layout

2003-10-28 11:59  prudhomm

	* life/: lifefem/Makefile.am, lifemesh/Makefile.am:

	correct dependencies between the various libraries

2003-10-28 11:54  prudhomm

	* life/: Makefile.am, lifecore/.cvsignore, lifecore/GetPot.cc,
	lifecore/GetPot.h, lifecore/Makefile.am,
	lifecore/NavierStokesAleHandler.h,
	lifecore/NavierStokesAleSolverPC.h, lifecore/NavierStokesHandler.h,
	lifecore/NavierStokesSolverPC.h, lifecore/Operator01.h,
	lifecore/RNM.hpp, lifecore/RNM_op.hpp, lifecore/RNM_opc.hpp,
	lifecore/RNM_tpl.hpp, lifecore/SimpleVect.h,
	lifecore/algebraic_facto.h, lifecore/assemb.cc, lifecore/assemb.h,
	lifecore/bc_manage.h, lifecore/chrono.h, lifecore/dataAztec.cc,
	lifecore/dataAztec.h, lifecore/dataMesh.h,
	lifecore/dataNavierStokes.h, lifecore/dataSimplifiedStructure.h,
	lifecore/dataString.cc, lifecore/dataString.h,
	lifecore/dataTime.cc, lifecore/dataTime.h, lifecore/elemMat.cc,
	lifecore/elemMat.h, lifecore/elemVec.cc, lifecore/elemVec.h,
	lifecore/fortran_wrap.h, lifecore/gmsh_wrtrs.h,
	lifecore/inexactLU.h, lifecore/lifeV.h, lifecore/medit_wrtrs.cc,
	lifecore/medit_wrtrs.h, lifecore/mixed_pattern.h,
	lifecore/openDX_wrtrs.h, lifecore/pattern.cc, lifecore/pattern.h,
	lifecore/saddlePointCG.h, lifecore/simplifiedStructure.h,
	lifecore/subDomainNeighbors.cc, lifecore/subDomainNeighbors.h,
	lifecore/switch.cc, lifecore/switch.h, lifecore/tab.h,
	lifecore/util_string.cc, lifecore/util_string.h,
	lifecore/values.cc, lifecore/values.h, lifecore/variables.h,
	lifecore/vecUnknown.cc, lifecore/vecUnknown.h,
	lifecore/vtk_wrtrs.cc, lifecore/vtk_wrtrs.h, lifefem/Makefile.am,
	lifefem/currentBdFE.cc, lifefem/currentBdFE.h,
	lifefem/currentFE.cc, lifefem/currentFE.h,
	lifefem/currentHdivFE.cc, lifefem/currentHdivFE.h,
	lifefem/defQuadRuleFE.cc, lifefem/elemOper.cc, lifefem/elemOper.h,
	lifefem/elemOper_ext.h, lifefem/geoMap.cc, lifefem/geoMap.h,
	lifefem/localDofPattern.cc, lifefem/localDofPattern.h,
	lifefem/quadRule.cc, lifefem/quadRule.h, lifefem/refEle.cc,
	lifefem/refEle.h, lifefem/refFE.cc, lifefem/refFE.h,
	lifefem/refHdivFE.cc, lifefem/refHdivFE.h, lifefem/refHybridFE.cc,
	lifefem/refHybridFE.h, lifefem/sobolevNorms.h,
	lifefem/staticBdFE.cc, lifefem/staticBdFE.h, lifemesh/.cvsignore,
	lifemesh/Makefile.am, lifemesh/bareItems.cc, lifemesh/bareItems.h,
	lifemesh/basisElSh.cc, lifemesh/basisElSh.h, lifemesh/bcCond.cc,
	lifemesh/bcCond.h, lifemesh/bcVector.cc, lifemesh/bcVector.h,
	lifemesh/dof.cc, lifemesh/dof.h, lifemesh/dofInterface3Dto2D.cc,
	lifemesh/dofInterface3Dto2D.h, lifemesh/dofInterface3Dto3D.cc,
	lifemesh/dofInterface3Dto3D.h, lifemesh/dofInterfaceBase.cc,
	lifemesh/dofInterfaceBase.h, lifemesh/dofInterfaceHandler.cc,
	lifemesh/dofInterfaceHandler.h, lifemesh/geo0D.cc,
	lifemesh/geo0D.h, lifemesh/geoElement.h, lifemesh/geoND.h,
	lifemesh/identifier.cc, lifemesh/identifier.h, lifemesh/markers.h,
	lifemesh/markers_base.cc, lifemesh/markers_base.h,
	lifemesh/meshEntity.h, lifemesh/meshMotion.cc,
	lifemesh/meshMotion.h, lifemesh/mesh_util.cc, lifemesh/mesh_util.h,
	lifemesh/mesh_util_base.cc, lifemesh/mesh_util_base.h,
	lifemesh/readMesh2D.h, lifemesh/readMesh3D.cc,
	lifemesh/readMesh3D.h, lifemesh/regionMesh2D.h,
	lifemesh/regionMesh3D.cc, lifemesh/regionMesh3D.h:

	moved sources to life : life/lifecore life/lifemesh life/lifefem

2003-10-28 10:39  prudhomm

	* doc/: manual/BCCond.eps, manual/BCCond.fig, manual/BCHandler.eps,
	manual/BCHandler.fig, manual/BasElSha.eps, manual/BasElSha.fig,
	manual/Directories_Organization, manual/Fem_nodes.eps,
	manual/Fem_nodes.fig, manual/Fem_nodes.ps,
	manual/NSCode_mesh_types.eps, manual/NSCode_mesh_types.kpr,
	manual/Specifications.tex, manual/boundary_conditions.ps,
	manual/doc_menu.ps, manual/docfe.tex, manual/jfg.tex,
	manual/letter_Jan_2000.txt, manual/lsc_page.html,
	manual/mixed_pattern.eps, manual/mixed_pattern.fig,
	manual/theFE.eps, manual/theFE.fig, notes/Alain_dec01.ps,
	notes/Meeting06-09-2002.ps, notes/Meeting200502.ps,
	notes/doxy_comment.tex:

	moved Documents/Manual Documents/Various and Notes to doc/manual
	doc/misc doc/notes

2003-10-23 16:30  prudhomm

	* configure.ac:

	configure checks for the presence of aztec now (it even looks at
	the mox/epfl repository)

2003-10-23 07:49  prudhomm

	* INSTALL.cvs:

	add extremely extensive documentation for compilation from CVS

2003-10-23 07:17  prudhomm

	* .cvsignore, AUTHORS, INSTALL, INSTALL.cvs, README:

	* ignore automatically generated file * INSTALL file added *
	INSTALL.cvs to be written * README is to be re-written also

2003-10-20 17:19  prudhomm

	* LifeV.kdevelop, configure.ac:

	added C++ support :)

2003-10-20 11:30  prudhomm

	* .cvsignore, ChangeLog, LifeV.kdevelop:

	update

2003-10-20 10:20  prudhomm

	* AUTHORS, COPYING, ChangeLog, INSTALL, LifeV.kdevelop,
	Makefile.cvs, NEWS:

	* use admin/cvs.sh * added files that automake want (dummy for now)
	* added kdevelop configuration

2003-10-20 10:10  prudhomm

	* configure.ac:

	some minor changes * my email address * version * echoing info to
	show some activity

2003-10-20 10:00  prudhomm

	* configure.ac:

	add admin as config dir

2003-10-20 09:41  prudhomm

	* Makefile.am, Makefile.cvs, configure.ac:

	reorg started in branch LIFEV_reorganization. imported autotools
	scripts (autoconf,automake,libtool)

2003-10-15 17:24  prudhomm

	* README:

	README

2003-10-15 16:59  prudhomm

	* README:

	my main contribution to Life ;) : edit the README file

2003-06-19 06:34  forma

	* Doxyfile:

	I do not producing anymore latrex file by default. This saves time
	and space. After all who is using LaTeX documentation produced by
	doxygen?

2002-10-29 17:31  cvs

	* README:

	Una prova

2002-10-03 16:31  cvs

	* Doxyfile:

	Initial revision

2002-10-03 16:31  cvs

	* Doxyfile:

	LifeV Version 1.0

