Bio.config.DBRegistry.BioSQLDB

Package Bio :: Package config :: Module DBRegistry :: Class BioSQLDB

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Class BioSQLDB

RegisterableObject --+    
                     |    
              DBObject --+
                         |
                        BioSQLDB

Represent a BioSQL-style database to retrieve SeqRecord objects.

This returns a SeqRecord-like object from _get() instead of a handle (since BioSQL is not going to give you a handle).

Method Summary
	`__init__(self, name, doc, db_host, db_port, db_user, db_passwd, sql_db, namespace_db, db_type)` Intialize with information for connecting to the BioSQL db.
Inherited from DBObject
	`__getitem__(self, key)`
	`get(self, key, default)` S.get(key[, default]) -> data
	`get_as(self, key, to_io, default)` S.get_as(key[, to_io][, default]) -> object
	`set(self, key, data)`

Method Details

Intialize with information for connecting to the BioSQL db.

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