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Package Bio :: Package Wise
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Package Bio.Wise

Submodules

Function Summary
  align(cmdline, pair, kbyte, force_type, dry_run, quiet, debug)
Returns a filehandle
  all_pairs(singles)
Generate pairs list for all-against-all alignments
  main()

Function Details

align(cmdline, pair, kbyte=None, force_type=None, dry_run=False, quiet=False, debug=False)

Returns a filehandle

all_pairs(singles)

Generate pairs list for all-against-all alignments 
>>> all_pairs(range(4))
[(0, 1), (0, 2), (0, 3), (1, 2), (1, 3), (2, 3)]

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