Bio.Prosite.Pattern

Package Bio :: Package Prosite :: Module Pattern

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Module Bio.Prosite.Pattern

Function Summary
	`compile(pattern)`
	`find_terms(pattern)`
	`pattern_mapping(prosite, mapping)`
	`prosite_to_grouped_re(pattern)` convert a valid Prosite pattern into an re with groups for each term
	`prosite_to_re(pattern)` convert a valid Prosite pattern into an re string
	`verify_pattern(pattern)` returns 1 if the Prosite pattern is syntactically correct, else 0

Function Details

convert a valid Prosite pattern into an re with groups for each term

convert a valid Prosite pattern into an re string

returns 1 if the Prosite pattern is syntactically correct, else 0

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