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Package Bio :: Package Application :: Class AbstractCommandline
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Class AbstractCommandline

Known Subclasses:
AlignAceCommandline, BlastallCommandline, CompareAceCommandline, EConsenseCommandline, EInvertedCommandline, ENeighborCommandline, EProtDistCommandline, EProtParsCommandline, ESeqBootCommandline, Est2GenomeCommandline, ETandemCommandline, FastacmdCommandline, FuzznucCommandline, PalindromeCommandline, Primer3Commandline, PrimerSearchCommandline, TranalignCommandline, WaterCommandline

Generic interface for running applications from biopython.

This class shouldn't be called directly; it should be subclassed to provide an implementation for a specific application.
Method Summary
  __init__(self)
  __str__(self)
Make the commandline with the currently set options.
  set_parameter(self, name, value)
Set a commandline option for a program.

Method Details

__str__(self)
(Informal representation operator)

Make the commandline with the currently set options.

set_parameter(self, name, value=None)

Set a commandline option for a program.

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