Represent a BioSQL-style database to retrieve SeqRecord objects.
This returns a SeqRecord-like object from _get() instead of a handle
(since BioSQL is not going to give you a handle).
| Method Summary |
| |
__init__(self,
name,
doc,
db_host,
db_port,
db_user,
db_passwd,
sql_db,
namespace_db,
db_type)
Intialize with information for connecting to the BioSQL db. |
| |
_convert_to(self,
data,
to_io)
S._convert_to(data, to_io) -> another data type |
| |
_get(self,
key)
S._get(key) -> data |
| |
_get_db_module(self,
db_type)
Retrieve the appropriate module to use for connecting to a
database |
| |
_make_pickleable(self,
item)
|
| |
_unmake_pickleable(self,
item)
|
| Inherited from DBObject |
| |
__getitem__(self,
key) |
| |
get(self,
key,
default)
S.get(key[, default]) -> data |
| |
get_as(self,
key,
to_io,
default)
S.get_as(key[, to_io][, default]) -> object |
| |
set(self,
key,
data) |
| |
_set(self,
key,
data)
S._set(key, data) |