Bio.config.DBRegistry.BioCorbaDB

Package Bio :: Package config :: Module DBRegistry :: Class BioCorbaDB

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Class BioCorbaDB

RegisterableObject --+    
                     |    
              DBObject --+
                         |
                        BioCorbaDB

Represent a BioCorba BioSequenceCollection for SeqRecord objects.

Returns SeqRecord-like objects.

Method Summary
	`__init__(self, name, ior_ref, server_type, doc)` Intialize with IOR reference for a BioCorba Collection.
	`_convert_to(self, data, to_io)` S._convert_to(data, to_io) -> another data type
	`_get(self, key)` S._get(key) -> data
	`_get_corba_client(self, ior_ref, retriever)` Get a connection to the CORBA server based on the ior_ref
	`_get_retriever(self, server_type)` Return a BioCorba retriever object based on the specified server.
Inherited from DBObject
	`__getitem__(self, key)`
	`get(self, key, default)` S.get(key[, default]) -> data
	`get_as(self, key, to_io, default)` S.get_as(key[, to_io][, default]) -> object
	`set(self, key, data)`
	`_make_pickleable(self, data)` S._make_pickleable(key, data) -> pickleable_obj
	`_set(self, key, data)` S._set(key, data)
	`_unmake_pickleable(self, pickleable_obj)` S._unmake_pickleable(key, pickleable_obj) -> data

Method Details

init(self, name, ior_ref, server_type=None, doc='')
(Constructor)

Intialize with IOR reference for a BioCorba Collection.

ior_ref is a URL or file reference to an IOR string. The IOR should reference a BioSequenceCollection. This is the top level BioCorba object we should use for making objects available.

server_type is a hack parameter which might be necessary if there are server/client issues (ie. as with Perl ORBit) that we need to muck around with. If not set, we just use a standard retriever.

Overrides:: Bio.config.DBRegistry.DBObject.__init__

_convert_to(self, data, to_io)

S._convert_to(data, to_io) -> another data type

Overrides:: Bio.config.DBRegistry.DBObject._convert_to (inherited documentation)

_get(self, key)

S._get(key) -> data

Overrides:: Bio.config.DBRegistry.DBObject._get (inherited documentation)

_get_corba_client(self, ior_ref, retriever)

Get a connection to the CORBA server based on the ior_ref

_get_retriever(self, server_type)

Return a BioCorba retriever object based on the specified server.

This returns a ready-to-go client retriever which can be used to connect to a BioCorba server.

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