Consumer that converts a SwissProt record to a Record object.
Members: data Record with SwissProt data.
| Method Summary |
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__init__(self)
|
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_chomp(self,
word,
to_chomp)
|
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_clean_record(self,
rec)
|
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_clean_references(self,
ref)
|
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_fix_varsplic_sequences(self,
description)
Remove unwanted spaces in sequences. |
| |
accession(self,
line)
|
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comment(self,
line)
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database_cross_reference(self,
line)
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date(self,
line)
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description(self,
line)
|
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end_record(self)
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feature_table(self,
line)
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gene_name(self,
line)
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identification(self,
line)
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keyword(self,
line)
|
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organelle(self,
line)
|
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organism_classification(self,
line)
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organism_species(self,
line)
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reference_author(self,
line)
|
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reference_comment(self,
line)
|
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reference_cross_reference(self,
line)
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reference_location(self,
line)
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reference_number(self,
line)
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reference_position(self,
line)
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reference_title(self,
line)
|
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sequence_data(self,
line)
|
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sequence_header(self,
line)
|
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start_record(self)
|
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taxonomy_id(self,
line)
|
| |
terminator(self,
line)
|
| Inherited from AbstractConsumer |
| |
__getattr__(self,
attr) |
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_unhandled(self,
data) |
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_unhandled_section(self) |