Bio.Sequencing.Ace.

Package Bio :: Package Sequencing :: Module Ace :: Class _Scanner

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Class _Scanner

Scans a ACE-formatted file

Methods: feed - Feed one ACE record.

Method Summary
	`_scan_bq_data(self, uhandle, consumer)` Scans multiple lines of quality data and concatenates them.
	`_scan_bracket_tags(self, uhandle)` Reads the data lines of a {} tag.
	`_scan_record(self, uhandle, consumer)`
	`_scan_sequence_data(self, uhandle)` Scans multiple lines of sequence data and concatenates them.
	`feed(self, handle, consumer)` feed(self, handle, consumer)

Method Details

_scan_bq_data(self, uhandle, consumer)

Scans multiple lines of quality data and concatenates them.

_scan_bracket_tags(self, uhandle)

Reads the data lines of a {} tag.

_scan_sequence_data(self, uhandle)

Scans multiple lines of sequence data and concatenates them.

feed(self, handle, consumer)

Feed in ACE data for scanning. handle is a file-like object containing ACE data. consumer is a Consumer object that will receive events as the ACE data is scanned.

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