Bio.MEME.Parser.MASTRecord

Package Bio :: Package MEME :: Module Parser :: Class MASTRecord

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Class MASTRecord

The class for holding the results from a MAST run.

A MASTRecord holds data about matches between motifs and sequences.
The motifs held by the MASTRecord are objects of the class MEMEMotif.

Methods:
get_motif_matches_for_sequence(sequence_name): returns all of the
    motif matches within a given sequence. The matches are objects of
    the class MEME.Motif.Instance
get_motif_matches (motif_name): returns all of the matches for a motif
    in the sequences searched. The matches returned are of class 
    MEME.Motif.Instance
get_motif_by_name (motif_name): returns a MEMEMotif with the given
    name.

Method Summary
	`__init__(self)`
	`get_motif_by_name(self, name)`
	`get_motif_matches(self, motif)`
	`get_motif_matches_for_sequence(self, seq)`
	`_add_diagram_for_sequence(self, diagram, seq)`
	`_add_match(self, match)`
	`_add_motif(self, motif)`
	`_add_sequence(self, sequence)`
	`_alphabet(self, alphabet)`
	`_database(self, database)`
	`_version(self, version)`

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