Bio.Compass._Consumer

Package Bio :: Package Compass :: Class _Consumer

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Class _Consumer

Method Summary
	`__init__(self)`
	`hit_alignment(self, line)`
	`lengths(self, line)`
	`names(self, line)` Ali1: 60456.blo.gz.aln Ali2: allscop//14984.blo.gz.aln...
	`positive_alignment(self, line)`
	`profilewidth(self, line)`
	`query_alignment(self, line)`
	`scores(self, line)`
	`threshold(self, line)`

Class Variable Summary
`SRE_Pattern`	`_re_align` = `^.{15}(\S+)`
`SRE_Pattern`	`_re_lengths` = `length1=(\S+)\s+filtered_length1=(\S+)\s+l...`
`SRE_Pattern`	`_re_names` = `Ali1:\s+(\S+)\s+Ali2:\s+(\S+)\s+`
`SRE_Pattern`	`_re_positive_alignment` = `^.{15}(.+)`
`SRE_Pattern`	`_re_profilewidth` = `Nseqs1=(\S+)\s+Neff1=(\S+)\s+Nseqs2=(...`
`SRE_Pattern`	`_re_scores` = `Smith-Waterman score = (\S+)\s+Evalue = (\S...`
`SRE_Pattern`	`_re_start` = `(\d+)`
`SRE_Pattern`	`_re_threshold` = `Threshold of effective gap content in co...`

Method Details

Ali1: 60456.blo.gz.aln  Ali2: allscop//14984.blo.gz.aln
      ------query-----        -------hit-------------

Class Variable Details

Type:: SRE_Pattern
Value:: length1=(\S+)\s+filtered_length1=(\S+)\s+length2=(\S+)\s+filtered_leng\ th2=(\S+)

Generated by Epydoc 2.1 on Wed Jan 31 09:57:59 2007