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| Package Bio :: Package Blast :: Module NCBIWWW :: Class _Scanner |
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Scan BLAST output from NCBI's web server at: http://www.ncbi.nlm.nih.gov/BLAST/
Tested with BLAST v2.0.10
Methods: feed Feed data into the scanner.| Method Summary | |
|---|---|
_scan_abbreviated_pairwise_alignment(self,
uhandle,
consumer)
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_scan_alignment_header(self,
uhandle,
consumer)
| |
_scan_alignments(self,
uhandle,
consumer)
| |
_scan_blastform(self,
uhandle,
consumer)
| |
_scan_database_info(self,
uhandle,
consumer)
| |
_scan_database_report(self,
uhandle,
consumer)
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_scan_descriptions(self,
uhandle,
consumer)
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_scan_header(self,
uhandle,
consumer)
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_scan_hsp(self,
uhandle,
consumer)
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_scan_hsp_alignment(self,
uhandle,
consumer)
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_scan_hsp_header(self,
uhandle,
consumer)
| |
_scan_masterslave_alignment(self,
uhandle,
consumer)
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_scan_one_pairwise_alignment(self,
uhandle,
consumer)
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_scan_pairwise_alignments(self,
uhandle,
consumer)
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_scan_parameters(self,
uhandle,
consumer)
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_scan_query_info(self,
uhandle,
consumer)
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_scan_rounds(self,
uhandle,
consumer)
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S.feed(handle, consumer) | |
| Method Details |
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feed(self, handle, consumer)S.feed(handle, consumer) Feed in a BLAST report for scanning. handle is a file-like object that contains the BLAST report. consumer is a Consumer object that will receive events as the report is scanned. |
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| Generated by Epydoc 2.1 on Wed Jan 31 09:58:00 2007 | http://epydoc.sf.net |