| Method Summary |
| |
blast_cutoff(self,
line)
|
| |
database_length(self,
line)
|
| |
dropoff_1st_pass(self,
line)
|
| |
effective_database_length(self,
line)
|
| |
effective_hsp_length(self,
line)
|
| |
effective_query_length(self,
line)
|
| |
effective_search_space(self,
line)
|
| |
effective_search_space_used(self,
line)
|
| |
end_parameters(self)
|
| |
frameshift(self,
line)
|
| |
gap_penalties(self,
line)
|
| |
gap_trigger(self,
line)
|
| |
gap_x_dropoff(self,
line)
|
| |
gap_x_dropoff_final(self,
line)
|
| |
hsps_gapped(self,
line)
|
| |
hsps_no_gap(self,
line)
|
| |
hsps_prelim_gapped(self,
line)
|
| |
hsps_prelim_gapped_attempted(self,
line)
|
| |
matrix(self,
line)
|
| |
num_extends(self,
line)
|
| |
num_good_extends(self,
line)
|
| |
num_hits(self,
line)
|
| |
num_seqs_better_e(self,
line)
|
| |
num_sequences(self,
line)
|
| |
query_length(self,
line)
|
| |
start_parameters(self)
|
| |
threshold(self,
line)
|
| |
window_size(self,
line)
|