| Method Summary |
| |
__init__(self)
|
| |
noevent(self,
line)
|
| Inherited from _BlastConsumer |
| |
end_alignment(self) |
| |
end_database_report(self) |
| |
end_descriptions(self) |
| |
end_header(self) |
| |
end_hsp(self) |
| |
end_parameters(self) |
| |
round(self,
line) |
| |
start_header(self) |
| Inherited from AbstractConsumer |
| |
__getattr__(self,
attr) |
| |
_unhandled(self,
data) |
| |
_unhandled_section(self) |
| Inherited from _HeaderConsumer |
| |
database_info(self,
line) |
| |
query_info(self,
line) |
| |
reference(self,
line) |
| |
version(self,
line) |
| Inherited from _DescriptionConsumer |
| |
_parse(self,
description_line) |
| |
converged(self,
line) |
| |
description(self,
line) |
| |
description_header(self,
line) |
| |
model_sequences(self,
line) |
| |
no_hits(self,
line) |
| |
nonmodel_sequences(self,
line) |
| |
start_descriptions(self) |
| Inherited from _AlignmentConsumer |
| |
length(self,
line) |
| |
multalign(self,
line) |
| |
start_alignment(self) |
| |
title(self,
line) |
| Inherited from _HSPConsumer |
| |
align(self,
line) |
| |
frame(self,
line) |
| |
identities(self,
line) |
| |
query(self,
line) |
| |
sbjct(self,
line) |
| |
score(self,
line) |
| |
start_hsp(self) |
| |
strand(self,
line) |
| Inherited from _DatabaseReportConsumer |
| |
database(self,
line) |
| |
gapped(self,
line) |
| |
ka_params(self,
line) |
| |
ka_params_gap(self,
line) |
| |
num_letters_in_database(self,
line) |
| |
num_sequences_in_database(self,
line) |
| |
posted_date(self,
line) |
| |
start_database_report(self) |
| Inherited from _ParametersConsumer |
| |
blast_cutoff(self,
line) |
| |
database_length(self,
line) |
| |
dropoff_1st_pass(self,
line) |
| |
effective_database_length(self,
line) |
| |
effective_hsp_length(self,
line) |
| |
effective_query_length(self,
line) |
| |
effective_search_space(self,
line) |
| |
effective_search_space_used(self,
line) |
| |
frameshift(self,
line) |
| |
gap_penalties(self,
line) |
| |
gap_trigger(self,
line) |
| |
gap_x_dropoff(self,
line) |
| |
gap_x_dropoff_final(self,
line) |
| |
hsps_gapped(self,
line) |
| |
hsps_no_gap(self,
line) |
| |
hsps_prelim_gapped(self,
line) |
| |
hsps_prelim_gapped_attempted(self,
line) |
| |
matrix(self,
line) |
| |
num_extends(self,
line) |
| |
num_good_extends(self,
line) |
| |
num_hits(self,
line) |
| |
num_seqs_better_e(self,
line) |
| |
num_sequences(self,
line) |
| |
query_length(self,
line) |
| |
start_parameters(self) |
| |
threshold(self,
line) |
| |
window_size(self,
line) |