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Package Bio :: Package AlignAce
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Package Bio.AlignAce

Parser and code for dealing with the standalone version of AlignAce, a motif search program.

It also includes a very simple interface to CompareACE tool.

http://atlas.med.harvard.edu/
Submodules
  • AlignAceStandalone: This module provides code to work with the standalone version of AlignACE, for motif search in DNA sequences.
  • Applications: Definitions for interacting with AlignAce.
  • CompareAceStandalone: This module provides code to work with the standalone version of CompareAce, for motif comparison
  • Motif: Implementation of sequence motifs.
  • Parser: Classes for pparsing AlignAce and CompareACE files
  • Scanner: Consumers for AlignACE and CompareACE parsers.

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