Martel.test.testformats.swissprot38

Package Martel :: Package test :: Package testformats :: Module swissprot38

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Module Martel.test.testformats.swissprot38

Parser for the SWISS-PROT 38 format.

You probably want to use the variables 'record' (for a single record) and 'format' (for a set of records).

Function Summary
	`Simple(tag, tag_data)`

Variable Summary
`Group`	`AC` = `<Martel.Expression.Group instance at 0x2aaaad8e96c8...`
`Group`	`AC_block` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`bogus_DR_group` = `<Martel.Expression.Group instance at 0x...`
`Group`	`CC` = `<Martel.Expression.Group instance at 0x2aaaad8b3f38...`
`Group`	`CC_begin` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`CC_copyright` = `<Martel.Expression.Group instance at 0x2a...`
`Group`	`CC_copyright_begin` = `<Martel.Expression.Group instance a...`
`Group`	`CC_copyright_end` = `<Martel.Expression.Group instance at ...`
`Group`	`comment` = `<Martel.Expression.Group instance at 0x2aaaad8...`
`Group`	`DE` = `<Martel.Expression.Group instance at 0x2aaaad8b7758...`
`Group`	`DE_block` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`DR` = `<Martel.Expression.Group instance at 0x2aaaad8b8b90...`
`Group`	`DR_block` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Seq`	`DR_embl` = `<Martel.Expression.Seq instance at 0x2aaaad8ed...`
`Seq`	`DR_general` = `<Martel.Expression.Seq instance at 0x2aaaad...`
`Seq`	`DR_prosite` = `<Martel.Expression.Seq instance at 0x2aaaad...`
`Group`	`DT_ann_update` = `<Martel.Expression.Group instance at 0x2...`
`Group`	`DT_created` = `<Martel.Expression.Group instance at 0x2aaa...`
`Group`	`DT_seq_update` = `<Martel.Expression.Group instance at 0x2...`
`Group`	`end` = `<Martel.Expression.Group instance at 0x2aaaad8be5f...`
`Group`	`feature_block` = `<Martel.Expression.Group instance at 0x2...`
`ParseRecords`	`format` = `<Martel.Expression.ParseRecords instance at 0x2...`
`Group`	`format_expression` = `<Martel.Expression.Group instance at...`
`Group`	`FT` = `<Martel.Expression.Group instance at 0x2aaaad8bbfc8...`
`Group`	`FT_continuation` = `<Martel.Expression.Group instance at 0...`
`Group`	`FT_range` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`GN` = `<Martel.Expression.Group instance at 0x2aaaad8b0c68...`
`Group`	`GN_block` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`ID` = `<Martel.Expression.Group instance at 0x2aaaad8e95f0...`
`Group`	`KW` = `<Martel.Expression.Group instance at 0x2aaaad8ed560...`
`Group`	`KW_block` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`OC` = `<Martel.Expression.Group instance at 0x2aaaad8b16c8...`
`Group`	`OC_block` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`OG` = `<Martel.Expression.Group instance at 0x2aaaad8b1368...`
`Group`	`OG_block` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`OS` = `<Martel.Expression.Group instance at 0x2aaaad8b10e0...`
`Group`	`OS_block` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`RA` = `<Martel.Expression.Group instance at 0x2aaaad8b2440...`
`Group`	`RA_block` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`RC` = `<Martel.Expression.Group instance at 0x2aaaad8b2128...`
`Group`	`RC_block` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`record` = `<Martel.Expression.Group instance at 0x2aaaad8b...`
`Group`	`reference` = `<Martel.Expression.Group instance at 0x2aaaa...`
`Group`	`RL` = `<Martel.Expression.Group instance at 0x2aaaad8b3170...`
`Group`	`RL_block` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`RN` = `<Martel.Expression.Group instance at 0x2aaaad8b1a70...`
`Group`	`RP` = `<Martel.Expression.Group instance at 0x2aaaad8b19e0...`
`Group`	`RT` = `<Martel.Expression.Group instance at 0x2aaaad8b2dd0...`
`Group`	`RT_block` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`RX` = `<Martel.Expression.Group instance at 0x2aaaad8b24d0...`
`Group`	`sequence` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`single_comment` = `<Martel.Expression.Group instance at 0x...`
`Group`	`SQ` = `<Martel.Expression.Group instance at 0x2aaaad8bc200...`
`Group`	`SQ_data` = `<Martel.Expression.Group instance at 0x2aaaad8...`

Variable Details

AC

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8e96c8>

AC_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8e9680>

bogus_DR_group

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b4cf8>

CC

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b3f38>

CC_begin

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b3a70>

CC_copyright

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b48c0>

CC_copyright_begin

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b41b8>

CC_copyright_end

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b49e0>

comment

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b4dd0>

DE

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b7758>

DE_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b0b90>

DR

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b8b90>

DR_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8ed488>

DR_embl

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad8ed3f8>

DR_general

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad8ba2d8>

DR_prosite

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad8bad40>

DT_ann_update

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8ad878>

DT_created

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8e9830>

DT_seq_update

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8ad908>

end

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8be5f0>

feature_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8bc0e0>

format

Type:: ParseRecords
Value:: <Martel.Expression.ParseRecords instance at 0x2aaaad8beb48>

format_expression

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8beab8>

FT

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8bbfc8>

FT_continuation

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8ed9e0>

FT_range

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8ed908>

GN

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b0c68>

GN_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b0ef0>

ID

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8e95f0>

KW

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8ed560>

KW_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8ed7e8>

OC

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b16c8>

OC_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b1950>

OG

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b1368>

OG_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b15f0>

OS

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b10e0>

OS_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b1290>

RA

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b2440>

RA_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b2cf8>

RC

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b2128>

RC_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b23b0>

record

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8be998>

reference

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b35a8>

RL

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b3170>

RL_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b33f8>

RN

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b1a70>

RP

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b19e0>

RT

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b2dd0>

RT_block

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b3098>

RX

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b24d0>

sequence

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8be488>

single_comment

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8b4098>

SQ

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8bc200>

SQ_data

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad8bc2d8>

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