Bio.expressions.blast.wublast

Package Bio :: Package expressions :: Package blast :: Module wublast

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Module Bio.expressions.blast.wublast

Function Summary
	`main(outf)`

Variable Summary
`Group`	`blastn` = `<Martel.Expression.Group instance at 0x2aaaad77...`
`Seq`	`blastn_appheader` = `<Martel.Expression.Seq instance at 0x...`
`Seq`	`blastn_ending` = `<Martel.Expression.Seq instance at 0x2aa...`
`Seq`	`blastn_hsp_header` = `<Martel.Expression.Seq instance at 0...`
`Seq`	`blastn_identities` = `<Martel.Expression.Seq instance at 0...`
`Seq`	`blastn_score` = `<Martel.Expression.Seq instance at 0x2aaa...`
`Seq`	`blastn_strand` = `<Martel.Expression.Seq instance at 0x2aa...`
`Group`	`blastp` = `<Martel.Expression.Group instance at 0x2aaaad75...`
`Seq`	`blastp_appheader` = `<Martel.Expression.Seq instance at 0x...`
`Seq`	`blastp_ending` = `<Martel.Expression.Seq instance at 0x2aa...`
`Seq`	`blastp_hsp_header` = `<Martel.Expression.Seq instance at 0...`
`Seq`	`blastp_score` = `<Martel.Expression.Seq instance at 0x2aaa...`
`Group`	`blastx` = `<Martel.Expression.Group instance at 0x2aaaad78...`
`Seq`	`blastx_appheader` = `<Martel.Expression.Seq instance at 0x...`
`Seq`	`blastx_ending` = `<Martel.Expression.Seq instance at 0x2aa...`
`Seq`	`blastx_hsp_header` = `<Martel.Expression.Seq instance at 0...`
`Seq`	`blastx_identities` = `<Martel.Expression.Seq instance at 0...`
`Seq`	`blastx_score` = `<Martel.Expression.Seq instance at 0x2aaa...`
`Seq`	`blastx_strand` = `<Martel.Expression.Seq instance at 0x2aa...`
`Seq`	`blastx_table_entry` = `<Martel.Expression.Seq instance at ...`
`Seq`	`blastx_to_database` = `<Martel.Expression.Seq instance at ...`
`Seq`	`ending` = `<Martel.Expression.Seq instance at 0x2aaaad7463...`
`Seq`	`ending_start` = `<Martel.Expression.Seq instance at 0x2aaa...`
`Group`	`format` = `<Martel.Expression.Group instance at 0x2aaaad74...`
`Group`	`header` = `<Martel.Expression.Group instance at 0x2aaaad73...`
`Seq`	`hit_descr` = `<Martel.Expression.Seq instance at 0x2aaaad6...`
`Seq`	`hit_length` = `<Martel.Expression.Seq instance at 0x2aaaad...`
`Seq`	`identities` = `<Martel.Expression.Seq instance at 0x2aaaad...`
`MaxRepeat`	`parameters` = `<Martel.Expression.MaxRepeat instance at 0x...`
`Seq`	`query_database` = `<Martel.Expression.Seq instance at 0x2a...`
`Seq`	`spaces_line` = `<Martel.Expression.Seq instance at 0x2aaaa...`
`Seq`	`statistics` = `<Martel.Expression.Seq instance at 0x2aaaad...`
`Seq`	`table_entry` = `<Martel.Expression.Seq instance at 0x2aaaa...`
`Group`	`tblastn` = `<Martel.Expression.Group instance at 0x2aaaad7...`
`Seq`	`tblastn_appheader` = `<Martel.Expression.Seq instance at 0...`
`Seq`	`tblastn_hsp_header` = `<Martel.Expression.Seq instance at ...`
`Seq`	`tblastn_identities` = `<Martel.Expression.Seq instance at ...`
`Seq`	`tblastn_score` = `<Martel.Expression.Seq instance at 0x2aa...`
`Seq`	`tblastn_strand` = `<Martel.Expression.Seq instance at 0x2a...`
`Seq`	`tblastx_appheader` = `<Martel.Expression.Seq instance at 0...`
`Seq`	`timestamp` = `<Martel.Expression.Seq instance at 0x2aaaad7...`
`Seq`	`to_table` = `<Martel.Expression.Seq instance at 0x2aaaad72...`
`Seq`	`wublast_version` = `<Martel.Expression.Seq instance at 0x2...`

Variable Details

blastn

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad7773f8>

blastn_appheader

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad729248>

blastn_ending

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad746440>

blastn_hsp_header

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad736ab8>

blastn_identities

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad736a28>

blastn_score

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad733998>

blastn_strand

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad736098>

blastp

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad75d2d8>

blastp_appheader

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad7295f0>

blastp_ending

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad7463f8>

blastp_hsp_header

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad735098>

blastp_score

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad733998>

blastx

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad786368>

blastx_appheader

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad729998>

blastx_ending

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad746488>

blastx_hsp_header

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad7394d0>

blastx_identities

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad739320>

blastx_score

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad733998>

blastx_strand

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad736098>

blastx_table_entry

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad7374d0>

blastx_to_database

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad737dd0>

ending

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad7463b0>

ending_start

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad73af38>

format

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad74eb90>

header

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad732638>

hit_descr

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6dc488>

hit_length

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6d9c68>

identities

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad7355a8>

parameters

Type:: MaxRepeat
Value:: <Martel.Expression.MaxRepeat instance at 0x2aaaad73c0e0>

query_database

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad72a7a0>

spaces_line

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad744e18>

statistics

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad746368>

table_entry

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad72c320>

tblastn

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad79b908>

tblastn_appheader

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad729d40>

tblastn_hsp_header

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad73a950>

tblastn_identities

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad73a8c0>

tblastn_score

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad733998>

tblastn_strand

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad739f38>

tblastx_appheader

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad72a128>

timestamp

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad74a4d0>

to_table

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad72a7e8>

wublast_version

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad772cf8>

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