Bio.expressions.blast.ncbiblast

Package Bio :: Package expressions :: Package blast :: Module ncbiblast

[show private | hide private]

Module Bio.expressions.blast.ncbiblast

Function Summary
	`float_param(name)`
	`float_stat(name)`
	`int_param(name, signed, comma)`
	`int_stat(name, signed, comma)`
	`Number(name, attrs)`
	`_bit_info(s, name)`
	`_num_stat(name, signed, comma)`
	`_nv(s, expr)`

Variable Summary
`Seq`	`a_info` = `<Martel.Expression.Seq instance at 0x2aaaad6f85...`
`Group`	`alignment` = `<Martel.Expression.Group instance at 0x2aaaa...`
`Alt`	`blast_filter` = `<Martel.Expression.Alt instance at 0x2aaa...`
`Group`	`blastn` = `<Martel.Expression.Group instance at 0x2aaaad70...`
`Seq`	`blastn_appheader` = `<Martel.Expression.Seq instance at 0x...`
`Seq`	`blastn_ending` = `<Martel.Expression.Seq instance at 0x2aa...`
`Seq`	`blastn_hsp_header` = `<Martel.Expression.Seq instance at 0...`
`Seq`	`blastn_identical` = `<Martel.Expression.Seq instance at 0x...`
`Group`	`blastp` = `<Martel.Expression.Group instance at 0x2aaaad70...`
`Seq`	`blastp_appheader` = `<Martel.Expression.Seq instance at 0x...`
`Seq`	`blastp_ending` = `<Martel.Expression.Seq instance at 0x2aa...`
`Seq`	`blastp_hsp_header` = `<Martel.Expression.Seq instance at 0...`
`Seq`	`blastp_identical` = `<Martel.Expression.Seq instance at 0x...`
`Group`	`blastx` = `<Martel.Expression.Group instance at 0x2aaaad71...`
`Seq`	`blastx_appheader` = `<Martel.Expression.Seq instance at 0x...`
`Seq`	`blastx_ending` = `<Martel.Expression.Seq instance at 0x2aa...`
`Seq`	`blastx_hsp_header` = `<Martel.Expression.Seq instance at 0...`
`Seq`	`db_stats` = `<Martel.Expression.Seq instance at 0x2aaaad6e...`
`Group`	`expect` = `<Martel.Expression.Group instance at 0x2aaaad6d...`
`Group`	`format` = `<Martel.Expression.Group instance at 0x2aaaad6f...`
`Seq`	`frame` = `<Martel.Expression.Seq instance at 0x2aaaad6e35a...`
`Seq`	`frameshift_info` = `<Martel.Expression.Seq instance at 0x2...`
`Seq`	`gap_penalties_stats` = `<Martel.Expression.Seq instance at...`
`Seq`	`gapped_lambda_stats` = `<Martel.Expression.Seq instance at...`
`Seq`	`generic_info1` = `<Martel.Expression.Seq instance at 0x2aa...`
`Seq`	`generic_info2` = `<Martel.Expression.Seq instance at 0x2aa...`
`Group`	`header` = `<Martel.Expression.Group instance at 0x2aaaad6d...`
`Group`	`hit` = `<Martel.Expression.Group instance at 0x2aaaad6e871...`
`Seq`	`hit_descr` = `<Martel.Expression.Seq instance at 0x2aaaad6...`
`Seq`	`hit_length` = `<Martel.Expression.Seq instance at 0x2aaaad...`
`Seq`	`homology_line` = `<Martel.Expression.Seq instance at 0x2aa...`
`Group`	`hsp` = `<Martel.Expression.Group instance at 0x2aaaad6e868...`
`Seq`	`hsp_info` = `<Martel.Expression.Seq instance at 0x2aaaad6f...`
`Group`	`hsp_length` = `<Martel.Expression.Group instance at 0x2aaa...`
`Seq`	`lambda_stats` = `<Martel.Expression.Seq instance at 0x2aaa...`
`Seq`	`matrix_stats` = `<Martel.Expression.Seq instance at 0x2aaa...`
`Group`	`ncbi_version` = `<Martel.Expression.Group instance at 0x2a...`
`Group`	`num_bits` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Group`	`num_identical` = `<Martel.Expression.Group instance at 0x2...`
`Group`	`num_positives` = `<Martel.Expression.Group instance at 0x2...`
`Seq`	`query_database` = `<Martel.Expression.Seq instance at 0x2a...`
`Group`	`query_descr` = `<Martel.Expression.Group instance at 0x2aa...`
`Seq`	`query_letters` = `<Martel.Expression.Seq instance at 0x2aa...`
`Seq`	`query_line` = `<Martel.Expression.Seq instance at 0x2aaaad...`
`Seq`	`s1_info` = `<Martel.Expression.Seq instance at 0x2aaaad6fc...`
`Seq`	`s2_info` = `<Martel.Expression.Seq instance at 0x2aaaad6fd...`
`Seq`	`score` = `<Martel.Expression.Seq instance at 0x2aaaad6e0bd...`
`Seq`	`spaces_line` = `<Martel.Expression.Seq instance at 0x2aaaa...`
`Seq`	`strand` = `<Martel.Expression.Seq instance at 0x2aaaad6e61...`
`Seq`	`subject_line` = `<Martel.Expression.Seq instance at 0x2aaa...`
`Seq`	`t_info` = `<Martel.Expression.Seq instance at 0x2aaaad6f7c...`
`Group`	`table` = `<Martel.Expression.Group instance at 0x2aaaad6da...`
`Group`	`table_entry` = `<Martel.Expression.Group instance at 0x2aa...`
`Group`	`tblastn` = `<Martel.Expression.Group instance at 0x2aaaad7...`
`Seq`	`tblastn_appheader` = `<Martel.Expression.Seq instance at 0...`
`Seq`	`tblastn_ending` = `<Martel.Expression.Seq instance at 0x2a...`
`Seq`	`tblastn_hsp_header` = `<Martel.Expression.Seq instance at ...`
`Seq`	`tblastn_score` = `<Martel.Expression.Seq instance at 0x2aa...`
`Group`	`tblastx` = `<Martel.Expression.Group instance at 0x2aaaad7...`
`Seq`	`tblastx_appheader` = `<Martel.Expression.Seq instance at 0...`
`Seq`	`tblastx_ending` = `<Martel.Expression.Seq instance at 0x2a...`
`Seq`	`tblastx_frame` = `<Martel.Expression.Seq instance at 0x2aa...`
`Seq`	`tblastx_hsp_header` = `<Martel.Expression.Seq instance at ...`
`Group`	`to_table` = `<Martel.Expression.Group instance at 0x2aaaad...`
`Seq`	`ungapped_lambda_stats` = `<Martel.Expression.Seq instance ...`
`Seq`	`x1_info` = `<Martel.Expression.Seq instance at 0x2aaaad6f8...`
`Seq`	`x2_info` = `<Martel.Expression.Seq instance at 0x2aaaad6f9...`
`Seq`	`x3_info` = `<Martel.Expression.Seq instance at 0x2aaaad6fb...`
`Seq`	`_comma_digits` = `<Martel.Expression.Seq instance at 0x2aa...`

Variable Details

a_info

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6f85f0>

alignment

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6e8440>

blast_filter

Type:: Alt
Value:: <Martel.Expression.Alt instance at 0x2aaaad6db128>

blastn

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad7035f0>

blastn_appheader

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6db710>

blastn_ending

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6fd290>

blastn_hsp_header

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e82d8>

blastn_identical

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e1b00>

blastp

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad70ac68>

blastp_appheader

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6db998>

blastp_ending

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6fd200>

blastp_hsp_header

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e8320>

blastp_identical

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e0ef0>

blastx

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad719320>

blastx_appheader

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6dbc20>

blastx_ending

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6fd2d8>

blastx_hsp_header

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e8098>

db_stats

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e8ea8>

expect

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6dc5a8>

format

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6fdd40>

frame

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e35a8>

frameshift_info

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6f7908>

gap_penalties_stats

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6f2758>

gapped_lambda_stats

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6f1ef0>

generic_info1

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6f50e0>

generic_info2

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6f5d88>

header

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6d9998>

hit

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6e8710>

hit_descr

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6dc488>

hit_length

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6d9c68>

homology_line

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e6b00>

hsp

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6e8680>

hsp_info

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6f74d0>

hsp_length

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6dc6c8>

lambda_stats

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6f1128>

matrix_stats

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6f22d8>

ncbi_version

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6db170>

num_bits

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6dc518>

num_identical

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6dc638>

num_positives

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6dc8c0>

query_database

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6d7830>

query_descr

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6d87e8>

query_letters

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6d8518>

query_line

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e6908>

s1_info

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6fc3f8>

s2_info

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6fd1b8>

score

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e0bd8>

spaces_line

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad744e18>

strand

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e6128>

subject_line

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e8290>

t_info

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6f7c20>

table

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6da2d8>

table_entry

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6da200>

tblastn

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad78f998>

tblastn_appheader

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6dbea8>

tblastn_ending

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6fd2d8>

tblastn_hsp_header

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e8368>

tblastn_score

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e1998>

tblastx

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad727050>

tblastx_appheader

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6d8170>

tblastx_ending

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6fd248>

tblastx_frame

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e3908>

tblastx_hsp_header

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6e83f8>

to_table

Type:: Group
Value:: <Martel.Expression.Group instance at 0x2aaaad6d7b48>

ungapped_lambda_stats

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6ebe18>

x1_info

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6f8ab8>

x2_info

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6f9878>

x3_info

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6fb638>

_comma_digits

Type:: Seq
Value:: <Martel.Expression.Seq instance at 0x2aaaad6d7170>

Generated by Epydoc 2.1 on Mon Aug 14 08:26:42 2006

http://epydoc.sf.net