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Package Bio :: Package Nexus :: Module Trees
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Module Bio.Nexus.Trees

Classes
NodeData Stores tree-relevant data associated with nodes (e.g.
Tree Represents a tree using a chain of nodes with on predecessor (=ancestor) and multiple successors (=subclades).

Exceptions
TreeError  

Function Summary
  consensus(trees, threshold, outgroup)
Compute a majority rule consensus tree of all clades with relative frequency>=threshold from a list of trees.

Variable Summary
int PRECISION_BRANCHLENGTH = 6                                                                     
int PRECISION_SUPPORT = 6                                                                     

Function Details

consensus(trees, threshold=0.5, outgroup=None)

Compute a majority rule consensus tree of all clades with relative frequency>=threshold from a list of trees.

Variable Details

PRECISION_BRANCHLENGTH

Type:
int
Value:
6                                                                     

PRECISION_SUPPORT

Type:
int
Value:
6                                                                     

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