Chicken vs Anole Lizard Translated Blat alignments

Chicken (Gallus gallus, WASHUC2) and Anole Lizard (Anolis carolinensis, AnoCar1.0) were aligned using the Translated Blat alignment algorithm (Kent W, Genome Res., 2002;12(4):656-64) in Ensembl release 53. Chicken was used as the reference species. After running Translated Blat , the raw Translated Blat alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

Minimum score (minScore) 30
Database type (t) dnax
Query type (q) dnax
Mask out repeats (mask) lower
Mask out repeats on query (qmask) lower

Results

Number of alignment blocks: 310034

Genome coverage(bp) Coding exon coverage (bp)
Chicken
36,576,845 out of 1,100,480,441 17,952,761 out of 24,644,731
Anole Lizard
33,879,676 out of 1,781,602,899 16,379,447 out of 24,193,389