Mouse (Mus musculus, NCBIM37) and Medaka(Oryzias latipes, MEDAKA1) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 54. Mouse was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.
Full list of pairwise alignmentsNumber of alignment blocks: 207963
Genome coverage(bp) | Coding exon coverage (bp) | |
---|---|---|
Mouse | ![]() |
![]() |
49,333,741 out of 2,716,965,481 | 22,425,831 out of 35,152,623 | |
Medaka | ![]() |
![]() |
34,322,843 out of 868,983,502 | 17,089,678 out of 30,193,605 |